View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20569_high_11 (Length: 391)
Name: NF20569_high_11
Description: NF20569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20569_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 382
Target Start/End: Original strand, 31898372 - 31898750
Alignment:
| Q |
18 |
taagtgtgctaactgcttaatgttaggaagatattgtgtaggatgttgcatccaaatcct---------------ataaataagattcaatattgtactt |
102 |
Q |
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| T |
31898372 |
taagtgtgctaattgcttaatgtttggaagat-ttgtgtaggatgttgcatccaaatcctgacactaggatttctatagataagattcaatattgtactt |
31898470 |
T |
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| Q |
103 |
ggtctaagtatgaagcaaatggtagaccgaaaaaacatgaagaggaaaacaagaccatctctcatgtgactataaacgatgtagcaccgattctttaaat |
202 |
Q |
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| T |
31898471 |
ggtttaagtatgaagcaaatggtagaccgaaaaaacatgaagaggaaaacaagaccatctctcatgtgactataaacgatgtagcatcgattctttagat |
31898570 |
T |
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| Q |
203 |
tgaaggtgtgtctgatgtccgaaatgtatttgacgcgacaccagcacatatgataaatcattctgttcaaagagttgaaactgaaaagcaagagtctgtt |
302 |
Q |
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| T |
31898571 |
tgaaggtgtgtctgatgttcgaaatgtgtttgacgcaacaccaacacatatgacaaatcattttgttcaaaaagttgaaactgaaaagcaagagtctgtt |
31898670 |
T |
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| Q |
303 |
acaccattgagtataaatacctttgatagaattattgtagaattaatattccatacaaatttcaataaagcatatagtat |
382 |
Q |
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| T |
31898671 |
acaccattgagtataaatacctttgatagaattattgtagaattaatattccatacaaatttcaataaagcatatagtat |
31898750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 164
Target Start/End: Original strand, 31892951 - 31893033
Alignment:
| Q |
82 |
ataagattcaatattgtacttggtctaagtatgaagcaaatggtagaccgaaaaaacatgaagaggaaaacaagaccatctct |
164 |
Q |
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| T |
31892951 |
ataagattaaacattgttcttggtttaagcatggatcaaatggtagaccgaaaaaacgtgaagaggaaaagaagactatctct |
31893033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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