View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20569_high_14 (Length: 382)

Name: NF20569_high_14
Description: NF20569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20569_high_14
NF20569_high_14
[»] chr5 (13 HSPs)
chr5 (201-378)||(28366964-28367141)
chr5 (201-378)||(28375704-28375881)
chr5 (200-377)||(1536539-1536716)
chr5 (201-378)||(30963157-30963332)
chr5 (252-378)||(30927366-30927490)
chr5 (264-372)||(34647923-34648031)
chr5 (290-378)||(14663981-14664064)
chr5 (201-256)||(30957702-30957757)
chr5 (201-246)||(14664070-14664115)
chr5 (294-371)||(23775275-23775352)
chr5 (294-371)||(23862229-23862306)
chr5 (296-361)||(54437-54502)
chr5 (294-378)||(26459273-26459357)
[»] chr3 (21 HSPs)
chr3 (197-378)||(3112109-3112290)
chr3 (201-378)||(23344375-23344552)
chr3 (201-378)||(3110492-3110669)
chr3 (201-378)||(13990831-13991008)
chr3 (201-378)||(23338828-23339005)
chr3 (201-378)||(2174201-2174378)
chr3 (201-378)||(13985259-13985436)
chr3 (201-378)||(40800621-40800798)
chr3 (199-378)||(9730296-9730475)
chr3 (201-378)||(40802545-40802722)
chr3 (201-378)||(48216319-48216496)
chr3 (201-367)||(2168645-2168811)
chr3 (201-375)||(13980642-13980816)
chr3 (201-315)||(9724670-9724783)
chr3 (201-375)||(13991974-13992148)
chr3 (257-370)||(34578808-34578921)
chr3 (312-378)||(9721546-9721612)
chr3 (208-299)||(20454624-20454715)
chr3 (296-378)||(17033242-17033323)
chr3 (200-269)||(21473103-21473172)
chr3 (294-330)||(19307751-19307787)
[»] chr2 (18 HSPs)
chr2 (201-378)||(22430347-22430524)
chr2 (201-378)||(22435941-22436118)
chr2 (198-378)||(630727-630907)
chr2 (201-378)||(636281-636458)
chr2 (201-378)||(43776990-43777167)
chr2 (200-378)||(22424976-22425154)
chr2 (201-378)||(7909946-7910123)
chr2 (201-378)||(7917401-7917578)
chr2 (201-378)||(43771464-43771639)
chr2 (201-378)||(14893225-14893406)
chr2 (201-378)||(14898782-14898959)
chr2 (200-378)||(26694151-26694329)
chr2 (200-378)||(1519140-1519322)
chr2 (201-378)||(1525641-1525824)
chr2 (274-378)||(26702321-26702425)
chr2 (201-299)||(19052428-19052526)
chr2 (294-336)||(19052368-19052411)
chr2 (294-354)||(14188410-14188470)
[»] chr7 (18 HSPs)
chr7 (201-378)||(16648422-16648599)
chr7 (201-378)||(17622783-17622960)
chr7 (201-378)||(32148476-32148653)
chr7 (201-378)||(42167604-42167781)
chr7 (201-378)||(42208892-42209075)
chr7 (200-378)||(44655597-44655775)
chr7 (201-378)||(557855-558032)
chr7 (199-378)||(576038-576217)
chr7 (278-378)||(25499152-25499252)
chr7 (278-378)||(25493915-25494015)
chr7 (201-374)||(38011676-38011845)
chr7 (201-335)||(26456872-26457007)
chr7 (197-289)||(25493812-25493904)
chr7 (201-289)||(25499053-25499141)
chr7 (204-321)||(30027341-30027462)
chr7 (290-361)||(11726483-11726553)
chr7 (201-240)||(42162376-42162415)
chr7 (291-335)||(11726398-11726442)
[»] chr1 (15 HSPs)
chr1 (201-378)||(26711460-26711637)
chr1 (201-378)||(27178953-27179130)
chr1 (201-378)||(15716623-15716800)
chr1 (201-378)||(27194954-27195131)
chr1 (201-378)||(15711042-15711219)
chr1 (201-378)||(33498402-33498579)
chr1 (201-330)||(33492968-33493097)
chr1 (286-372)||(17721823-17721909)
chr1 (258-362)||(3343872-3343980)
chr1 (217-357)||(16498728-16498889)
chr1 (326-378)||(33491507-33491559)
chr1 (294-378)||(29644986-29645070)
chr1 (286-336)||(9088672-9088722)
chr1 (201-289)||(17721717-17721805)
chr1 (294-362)||(22575864-22575932)
[»] scaffold0004 (2 HSPs)
scaffold0004 (201-378)||(350975-351152)
scaffold0004 (201-378)||(345654-345831)
[»] chr8 (8 HSPs)
chr8 (201-378)||(12756145-12756322)
chr8 (201-378)||(24052017-24052194)
chr8 (200-378)||(41043477-41043655)
chr8 (201-378)||(41048858-41049028)
chr8 (294-378)||(2232107-2232190)
chr8 (297-375)||(7546047-7546125)
chr8 (300-330)||(24042894-24042924)
chr8 (294-378)||(13242837-13242922)
[»] chr4 (10 HSPs)
chr4 (201-378)||(20192575-20192752)
chr4 (17-201)||(22577411-22577602)
chr4 (197-378)||(6156546-6156727)
chr4 (201-378)||(20197939-20198116)
chr4 (201-378)||(6162247-6162424)
chr4 (201-373)||(53982094-53982265)
chr4 (297-357)||(12733922-12733982)
chr4 (294-377)||(53529819-53529902)
chr4 (289-373)||(7156154-7156238)
chr4 (294-362)||(26868220-26868288)
[»] chr6 (10 HSPs)
chr6 (201-377)||(14855936-14856112)
chr6 (197-378)||(14847074-14847255)
chr6 (201-378)||(26680570-26680746)
chr6 (201-288)||(6933039-6933126)
chr6 (294-378)||(31023400-31023484)
chr6 (200-254)||(6924848-6924902)
chr6 (290-357)||(13461951-13462020)
chr6 (290-362)||(10345722-10345793)
chr6 (276-357)||(13466762-13466845)
chr6 (201-246)||(10345858-10345903)
[»] scaffold0211 (1 HSPs)
scaffold0211 (200-377)||(26902-27079)
[»] scaffold0169 (2 HSPs)
scaffold0169 (228-378)||(10984-11134)
scaffold0169 (201-359)||(8695-8853)
[»] scaffold0121 (2 HSPs)
scaffold0121 (278-378)||(11409-11509)
scaffold0121 (198-280)||(11529-11611)
[»] scaffold0124 (2 HSPs)
scaffold0124 (278-377)||(39540-39639)
scaffold0124 (201-289)||(39441-39529)
[»] scaffold1317 (1 HSPs)
scaffold1317 (332-378)||(2022-2068)


Alignment Details
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 201 - 378
Target Start/End: Complemental strand, 28367141 - 28366964
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28367141 tgttatgaatattacaagtggatgtcaatatagcaattgagttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 28367042  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28367041 atttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcctctttcttctctctc 28366964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 201 - 378
Target Start/End: Complemental strand, 28375881 - 28375704
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28375881 tgttatgaatattacaagtggatgtccatatagcaattgagttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 28375782  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  28375781 atttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcttctttcttctctctc 28375704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 200 - 377
Target Start/End: Complemental strand, 1536716 - 1536539
Alignment:
Q  200 ttgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattg 299  Q
    ||||||| |||||||  ||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1536716 ttgttataaatattataagtggatgtccatatagcaattgggttattggatcatactgttagcttattgggccatattgtgcttgctccccaagtcattg 1536617  T
Q  300 tatttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctct 377  Q
    |||||||||||||||||||||||||||||||||||||| | ||  |||||||||||||||||||||||||||||||||    
T  1536616 tatttctctataaatagagctcatatgtaacctaattagagataccaagagaataatataatcctctttcttctctct 1536539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 201 - 378
Target Start/End: Complemental strand, 30963332 - 30963157
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||  |||||||||||||||| |||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30963332 tgttatgaatattataagtggatgtccatataacaattgggttattggatcatattgttagcttattggaccatattgtgcttgctccccaagtcattgt 30963233  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    ||||||||||||||||||||||||  |||| |||||||| |||||||||||||||||||||| |||||||||||||||    
T  30963232 atttctctataaatagagctcata--taacttaattatacatcacaagagaataatataatcatctttcttctctctc 30963157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 252 - 378
Target Start/End: Complemental strand, 30927490 - 30927366
Alignment:
Q  252 atattgttagcttattgggccatattgtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatatatcacaagaga 351  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||| ||||||| |||    
T  30927490 atattgttagcttattggaccatattgtgcttgctccccaagtcattgtatttctctataaatagagctcata--taacttaattatacatcacaaaaga 30927393  T
Q  352 ataatataatcctctttcttctctctc 378  Q
    ||||||||||| |||||||||||||||    
T  30927392 ataatataatcatctttcttctctctc 30927366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 264 - 372
Target Start/End: Complemental strand, 34648031 - 34647923
Alignment:
Q  264 tattgggccatattgtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcc 363  Q
    |||| ||| |||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||| || ||||||||||||||||| ||||     
T  34648031 tattaggctatattgtgcttgctccccaaatcattgtatttctgtataaattgagctcatatgtaacctaattgtacatcacaagagaataatagaatca 34647932  T
Q  364 tctttcttc 372  Q
    ||| |||||    
T  34647931 tctctcttc 34647923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 290 - 378
Target Start/End: Complemental strand, 14664064 - 14663981
Alignment:
Q  290 caagtcattgtatttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    |||||||||||||||||||||||||||||||||     |||||||||| | ||  |||||||||||||||||| |||||||||||||||    
T  14664064 caagtcattgtatttctctataaatagagctca-----aacctaattagagataccaagagaataatataatcttctttcttctctctc 14663981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 201 - 256
Target Start/End: Complemental strand, 30957757 - 30957702
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatatt 256  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||    
T  30957757 tgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatatt 30957702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 14664115 - 14664070
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttatt 246  Q
    ||||||||||||||  ||||||||||||||||||||||| ||||||    
T  14664115 tgttatgaatattataagtggatgtccatatagcaattgggttatt 14664070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 371
Target Start/End: Original strand, 23775275 - 23775352
Alignment:
Q  294 tcattgtatttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttctt 371  Q
    |||||||| |||||||||||||||| ||| ||||||  ||||| || |||| ||||||||| || |||| ||||||||    
T  23775275 tcattgtacttctctataaatagagatcacatgtaagataattgtacatcagaagagaatattaaaatcatctttctt 23775352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 371
Target Start/End: Original strand, 23862229 - 23862306
Alignment:
Q  294 tcattgtatttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttctt 371  Q
    |||||||| |||||||||||||||| ||| ||||||  ||||| || |||| ||||||||| || |||| ||||||||    
T  23862229 tcattgtacttctctataaatagagatcacatgtaagataattgtacatcagaagagaatattaaaatcatctttctt 23862306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 54502 - 54437
Alignment:
Q  296 attgtatttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataat 361  Q
    ||||||||||| ||||||||||| ||| |||||||  |||| || | |||||| ||||||||||||    
T  54502 attgtatttctatataaatagagttcacatgtaacacaattgtacaacacaagtgaataatataat 54437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 378
Target Start/End: Complemental strand, 26459357 - 26459273
Alignment:
Q  294 tcattgtatttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    ||||||||  |||| |||||||||| ||| ||||||  ||||| || |  |||||| ||||||||||| |||| |||||||||||    
T  26459357 tcattgtacgtctccataaatagagatcacatgtaatataattgtacactacaagaaaataatataattctctctcttctctctc 26459273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 197 - 378
Target Start/End: Complemental strand, 3112290 - 3112109
Alignment:
Q  197 atattgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtca 296  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3112290 atattgttatgaatattacaagtggatgtccatatagcaattgggttataagatcatattgttagcttattgggccatattgtgcttgctccccaagtca 3112191  T
Q  297 ttgtatttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  3112190 ttgtatttctctataaatagagctcatatgtaacttaattatacatcacaagagaataatataatcctctttcttctctctc 3112109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 201 - 378
Target Start/End: Original strand, 23344375 - 23344552
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23344375 tgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 23344474  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23344475 atttctctataaatagagctcatatgtaacctaattatagatcacaagagaataatataatcctctttcttctctctc 23344552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 201 - 378
Target Start/End: Complemental strand, 3110669 - 3110492
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3110669 tgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 3110570  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  3110569 atttctctataaatagagctcatatgtaacttaattatacatcacaagagaataatataatcctctttcttctctctc 3110492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 201 - 378
Target Start/End: Original strand, 13990831 - 13991008
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13990831 tgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgtttgctccccaagtcattgt 13990930  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13990931 atttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcctctttcttctctctc 13991008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 201 - 378
Target Start/End: Original strand, 23338828 - 23339005
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||| |||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23338828 tgttatgaatattacaagtggatgtccatatagcaattggattattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 23338927  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23338928 atttctctataaatagagctcatatgtaacctaattatagatcacaagagaataatataatcctctttcttctctctc 23339005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 201 - 378
Target Start/End: Complemental strand, 2174378 - 2174201
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||| |||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2174378 tgttatgaatattacaagtgtatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgtttgctccccaagtcattgt 2174279  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2174278 atttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcctctttcttctctctc 2174201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 201 - 378
Target Start/End: Original strand, 13985259 - 13985436
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13985259 tgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgtttgctccccaagtcattgt 13985358  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13985359 atttctctataaatagagatcatatgtaacctaattatacatcacaagagaataatataatcctctttcttctctctc 13985436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 201 - 378
Target Start/End: Complemental strand, 40800798 - 40800621
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40800798 tgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 40800699  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||    
T  40800698 atttctctataaatagagctcatatgtaacctaattatacataacaagagaataatataatcatctttcttctctctc 40800621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 199 - 378
Target Start/End: Complemental strand, 9730475 - 9730296
Alignment:
Q  199 attgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcatt 298  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9730475 attgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaaatcatt 9730376  T
Q  299 gtatttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    ||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||    
T  9730375 gtatttctctataaatagagctcatatgtaatctaattatacatgacaagagaataatataatcctctttcttctctctc 9730296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 201 - 378
Target Start/End: Complemental strand, 40802722 - 40802545
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  40802722 tgttatgaatattacaagtggatgtccatatagcaattgagttattggatcatattgttagcttattgggcgatattgtgcttgcttcccaagtcattgt 40802623  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||    
T  40802622 atttctctataaatagagctcatatgtaacttaattatacatcacaagagaataatataatcatctttcttctctctc 40802545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 201 - 378
Target Start/End: Complemental strand, 48216496 - 48216319
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||| || |||||||||||||||||||    
T  48216496 tgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgtcagcttattgggccatattttggttgctccccaagtcattgt 48216397  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  48216396 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcatctttcttctctctc 48216319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 201 - 367
Target Start/End: Complemental strand, 2168811 - 2168645
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2168811 tgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgtttgctccccaagtcattgt 2168712  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctt 367  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  2168711 atttctctataaatagagctcatatgtagcctaattatacatcacaagagaataatataatcctctt 2168645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 201 - 375
Target Start/End: Complemental strand, 13980816 - 13980642
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||  |||||||||| |||||| ||||| |||||| | ||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  13980816 tgttatgaatattataagtggatgtctatataggaattgggttattgggtcatactattagcttattgggccatattgtgcttgctccccaagtcattgt 13980717  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctct 375  Q
    ||||||||||||||||||||||||||||| |||||| || ||  |||||||||||||||||| ||||||||||||    
T  13980716 atttctctataaatagagctcatatgtaatctaattgtacataccaagagaataatataatcatctttcttctct 13980642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 201 - 315
Target Start/End: Complemental strand, 9724783 - 9724670
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  9724783 tgttatgaatattactagtggatgtccatatagcaattgggttattggatcatattgttagctt-tttggccatattgtgcttgctccccaagtcattgt 9724685  T
Q  301 atttctctataaata 315  Q
    |||||||||||||||    
T  9724684 atttctctataaata 9724670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 201 - 375
Target Start/End: Complemental strand, 13992148 - 13991974
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||  |||||||||| |||||||||||| |||||| | ||||| | ||||||||||||| ||||||||||||||||  |||||||||||    
T  13992148 tgttatgaatattataagtggatgtctatatagcaattgggttattgggtcatactattagcttattgggtcatattgtgcttgctcttcaagtcattgt 13992049  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctct 375  Q
     ||| | ||||||||||||||||||| |||||||||||| ||  |||||||||||||||||  ||||||||||||    
T  13992048 gtttatgtataaatagagctcatatgcaacctaattatacatatcaagagaataatataattatctttcttctct 13991974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 257 - 370
Target Start/End: Complemental strand, 34578921 - 34578808
Alignment:
Q  257 gttagcttattgggccatattgtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatatatcacaagagaataat 356  Q
    |||||||||||||  |||||||| |||  ||||||||||||||||||||||||||||||||||| ||||||||||||||||   ||   |||||||||||    
T  34578921 gttagcttattggatcatattgtacttattccccaagtcattgtatttctctataaatagagcttatatgtaacctaattagtgatactaagagaataat 34578822  T
Q  357 ataatcctctttct 370  Q
    |||||| |||||||    
T  34578821 ataatcatctttct 34578808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 312 - 378
Target Start/End: Complemental strand, 9721612 - 9721546
Alignment:
Q  312 aatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    |||| ||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9721612 aataaagctcatatgtactctaattatacatcacaagagaataatataatcctctttcttctctctc 9721546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 299
Target Start/End: Original strand, 20454624 - 20454715
Alignment:
Q  208 aatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattg 299  Q
    |||||||  ||||||||||||||||||||||| |||||| ||||||| | |||  |||||| |  |||||||||||| || |||||| ||||    
T  20454624 aatattataagtggatgtccatatagcaattgggttattggatcatactattaatttattgtgttatattgtgcttgatctccaagttattg 20454715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 378
Target Start/End: Original strand, 17033242 - 17033323
Alignment:
Q  296 attgtatttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    |||||| ||||||||||||||||  || ||||||| || || || || | |||||||||||||||||||| ||||||||||||    
T  17033242 attgtacttctctataaatagagaccacatgtaacata-ttgtacattataagagaataatataatcctcgttcttctctctc 17033323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 269
Target Start/End: Original strand, 21473103 - 21473172
Alignment:
Q  200 ttgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgg 269  Q
    ||||||| ||||||| ||||||||||||| ||||||| || |||||| |  |||| | ||||||||||||    
T  21473103 ttgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactattagcttattgg 21473172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Complemental strand, 19307787 - 19307751
Alignment:
Q  294 tcattgtatttctctataaatagagctcatatgtaac 330  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  19307787 tcattgtatttctctataaatagagatcacatgtaac 19307751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 201 - 378
Target Start/End: Original strand, 22430347 - 22430524
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22430347 tgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 22430446  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  22430447 atttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcctctttcttctctctc 22430524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 201 - 378
Target Start/End: Original strand, 22435941 - 22436118
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22435941 tgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 22436040  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  22436041 atttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcctctttcttctctctc 22436118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 198 - 378
Target Start/End: Original strand, 630727 - 630907
Alignment:
Q  198 tattgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcat 297  Q
    |||||||||||||||||| |||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  630727 tattgttatgaatattacaagtggatgtccatataacaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcat 630826  T
Q  298 tgtatttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  630827 tgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcctctttcttctctctc 630907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 201 - 378
Target Start/End: Original strand, 636281 - 636458
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||| |||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  636281 tgttatgaatattacaagtggatgtccatataacaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 636380  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  636381 atttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcctctttcttctctctc 636458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 201 - 378
Target Start/End: Original strand, 43776990 - 43777167
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43776990 tgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 43777089  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  43777090 atttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcatctttcttctctctc 43777167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 200 - 378
Target Start/End: Original strand, 22424976 - 22425154
Alignment:
Q  200 ttgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattg 299  Q
    |||||||||||||||| |||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22424976 ttgttatgaatattacaagtggatgtccatatagcaaatgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattg 22425075  T
Q  300 tatttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  22425076 tatttctctataaatagagctcatatgtaacccaattatacatcacaagagaataatataatcctctttcttctctctc 22425154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 201 - 378
Target Start/End: Complemental strand, 7910123 - 7909946
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||| |||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7910123 tgttatgaatattacaagtggatgtccatataacaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 7910024  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  7910023 atttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcatctttcttctctctc 7909946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 201 - 378
Target Start/End: Complemental strand, 7917578 - 7917401
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||| |||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7917578 tgttatgaatattacaagtggatgtccatataacaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 7917479  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  7917478 atttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcttctttcttctctctc 7917401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 201 - 378
Target Start/End: Original strand, 43771464 - 43771639
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43771464 tgttatgaatattacaagtggatgtccatatagcaattgggttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 43771563  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    ||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  43771564 atttctctataaatagagctcata--taacctaattatacatcacaagagaataatataatcatctttcttctctctc 43771639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 201 - 378
Target Start/End: Original strand, 14893225 - 14893406
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatatt----gtgcttgctccccaagtca 296  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    |||||||||||||||||||    
T  14893225 tgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatatttattgtgcttgctccccaagtca 14893324  T
Q  297 ttgtatttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14893325 ttgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcctctttcttctctctc 14893406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 201 - 378
Target Start/End: Original strand, 14898782 - 14898959
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    |||||||||||||||  |||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||| || |||||||    
T  14898782 tgttatgaatattacaggtggatgtccatatagcaattgggttattggatcatattgttagcttattggaccatattgtgcttgctccctaaatcattgt 14898881  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14898882 atttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcctctttcttctctctc 14898959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 200 - 378
Target Start/End: Original strand, 26694151 - 26694329
Alignment:
Q  200 ttgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattg 299  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||| ||||||| |||||| ||||||  || ||||||||||||||||||||||||||    
T  26694151 ttgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatactgttagtttattgaaccttattgtgcttgctccccaagtcattg 26694250  T
Q  300 tatttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||| ||||    
T  26694251 tatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataacataatcttctttcttctatctc 26694329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 200 - 378
Target Start/End: Original strand, 1519140 - 1519322
Alignment:
Q  200 ttgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcat-- 297  Q
    |||||||||||||||  ||||||| |||||||||||||||  ||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||      
T  1519140 ttgttatgaatattataagtggatatccatatagcaattggattattggattatattgttagcttattgggtcatattgtgcttgctccccaagtcattc 1519239  T
Q  298 --tgtatttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
      |||||||||||||||||||||||||||||||||||||||| | ||  ||||||||||||||||||||||||||||||||||    
T  1519240 attgtatttctctataaatagagctcatatgtaacctaattagagataccaagagaataatataatcctctttcttctctctc 1519322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 201 - 378
Target Start/End: Original strand, 1525641 - 1525824
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||  ||||||||||||||||| ||||| |||||| ||||||| |||||||||||| || |||||||||||||||||||||||||||||    
T  1525641 tgttatgaatattataagtggatgtccatatagaaattgggttattggatcatactgttagcttattaggtcatattgtgcttgctccccaagtcattgt 1525740  T
Q  301 atttctc------tataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    |||||||      |||||||||||||||||||||||||||||| | ||  ||| | ||||||||||||||||||||||||||||    
T  1525741 atttctctataaatataaatagagctcatatgtaacctaattagagataccaaaaaaataatataatcctctttcttctctctc 1525824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 274 - 378
Target Start/End: Original strand, 26702321 - 26702425
Alignment:
Q  274 tattgtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttct 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||    
T  26702321 tattgtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataacataatcttctttcttct 26702420  T
Q  374 ctctc 378  Q
     ||||    
T  26702421 atctc 26702425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 201 - 299
Target Start/End: Complemental strand, 19052526 - 19052428
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattg 299  Q
    ||||||| ||||||  |||| || ||||||||||||||||||||||   ||||| | |||||||||||| | |||||||||||||||||||||||||||    
T  19052526 tgttatggatattataagtgaatatccatatagcaattgagttattgagtcatactattagcttattggacgatattgtgcttgctccccaagtcattg 19052428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 294 - 336
Target Start/End: Complemental strand, 19052411 - 19052368
Alignment:
Q  294 tcattgtatttctctataaatagagctcata-tgtaacctaatt 336  Q
    ||||||||||||||||||||||||||||||| | ||||||||||    
T  19052411 tcattgtatttctctataaatagagctcatactataacctaatt 19052368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 354
Target Start/End: Original strand, 14188410 - 14188470
Alignment:
Q  294 tcattgtatttctctataaatagagctcatatgtaacctaattatatatcacaagagaata 354  Q
    |||||||| ||||||||||||||||  || ||||||| ||||| || | ||||||||||||    
T  14188410 tcattgtacttctctataaatagagaccacatgtaacataattgtacaccacaagagaata 14188470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 158; Significance: 5e-84; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 201 - 378
Target Start/End: Original strand, 16648422 - 16648599
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16648422 tgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 16648521  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  16648522 atttctctataaatagagctcatatgtaacctaattatacatcacaagagaaaaatataatcctctttcttctctctc 16648599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 201 - 378
Target Start/End: Original strand, 17622783 - 17622960
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17622783 tgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 17622882  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  17622883 atttctctataaatagagctcatatgtaacctaattatacatcacaagagaaaaatataatcctctttcttctctctc 17622960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 201 - 378
Target Start/End: Original strand, 32148476 - 32148653
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||| |||||||||||||||| |||||| |||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  32148476 tgttatgaatattacaagtggatgtccatataacaattgggttattggatcatattgttagtttattgggccatattgtgcttgctcccaaagtcattgt 32148575  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  32148576 atttctctataaatagagcttatatgtaacctaattatacatcacaagaaaataatataatcctctttcttctctctc 32148653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 201 - 378
Target Start/End: Complemental strand, 42167781 - 42167604
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||| |||||||||| |||||||||||||||||||||||||||    
T  42167781 tgttatgaatattaccagtggatgtccatatagcaattgagttatttgatcatactgttagtttattgggccttattgtgcttgctccccaagtcattgt 42167682  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||| ||||    
T  42167681 atttctctataaatagagctcatatgtaacctaattatacatcacaagaaaataacataatcctctttcttctatctc 42167604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 201 - 378
Target Start/End: Original strand, 42208892 - 42209075
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  42208892 tgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattggaccatattgtgcttgctccccaagtcattgt 42208991  T
Q  301 atttctctataaatagagctcatatgtaacc------taattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    |||||||||||||||||||||||||||||||      |||||||| |||||||||||||||||||||| |||||||||| ||||    
T  42208992 atttctctataaatagagctcatatgtaacctaattataattatacatcacaagagaataatataatcatctttcttctatctc 42209075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 200 - 378
Target Start/End: Original strand, 44655597 - 44655775
Alignment:
Q  200 ttgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattg 299  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||| ||||||| ||||||||||||||| | | ||||||||||| |||||||| |||    
T  44655597 ttgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatactgttagcttattgggtcttgttgtgcttgctacccaagtctttg 44655696  T
Q  300 tatttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    |||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||    
T  44655697 tatttctctataaattaagctcatatgtaacctaattatacatcacaagagaataatataatcctctttattctatctc 44655775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 201 - 378
Target Start/End: Complemental strand, 558032 - 557855
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||  |||||||||| ||||| |||||  |||||| | ||||| | ||||||||||||||||||||||||||||| |||||||||||||    
T  558032 tgttatgaatattataagtggatgtctatataacaattcggttattgggtcatactattagcttattgggccatattgtgcttgcttcccaagtcattgt 557933  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    |||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  557932 atttctctataaatagagttcatatgtaacctaattgtacatcacaagagaataatataatcctctttcttctctctc 557855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 199 - 378
Target Start/End: Complemental strand, 576217 - 576038
Alignment:
Q  199 attgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcatt 298  Q
    ||||||||||||||||  |||||||||| ||||| |||||  |||||| | ||||| | ||||||||||||||||||||||| ||||| |||||||||||    
T  576217 attgttatgaatattataagtggatgtctatataacaattcggttattgggtcatactattagcttattgggccatattgtgattgcttcccaagtcatt 576118  T
Q  299 gtatttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    |||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  576117 gtatttctctataaatagagttcatatgtaacctaattgtacatcacaagagaataatataatcctctttcttctctctc 576038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 278 - 378
Target Start/End: Original strand, 25499152 - 25499252
Alignment:
Q  278 gtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctct 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||| |||    
T  25499152 gtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaatgatacatcacaagagaataatatattcctctttcttctatct 25499251  T
Q  378 c 378  Q
    |    
T  25499252 c 25499252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 278 - 378
Target Start/End: Original strand, 25493915 - 25494015
Alignment:
Q  278 gtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctct 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||| ||||||||||||| |||    
T  25493915 gtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacataatgatacatcacaagagaataatatattcctctttcttctatct 25494014  T
Q  378 c 378  Q
    |    
T  25494015 c 25494015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 201 - 374
Target Start/End: Complemental strand, 38011845 - 38011676
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||  |||||||||||||||| |||||| |||||||| ||||| | |||| |||||||||  |||| | || | |||||||||||||||    
T  38011845 tgttatgaatattagaagtggatgtccatataacaattgggttattaggtcatactcttagtttattgggctttattatactggatccccaagtcattgt 38011746  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctc 374  Q
    ||| ||||||  ||||||||||||||||||||||||  ||||    ||||||||||||||||||||||||||||    
T  38011745 attactctatctatagagctcatatgtaacctaattgaatat----agagaataatataatcctctttcttctc 38011676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 201 - 335
Target Start/End: Complemental strand, 26457007 - 26456872
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatag-caattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattg 299  Q
    ||||||||||||||  ||||||||||||||||| ||||||  ||||| | | ||| | ||||||||||| || |||||| |||||||| |||| ||||||    
T  26457007 tgttatgaatattataagtggatgtccatataggcaattggattattgggttatactattagcttattgtgctatattgcgcttgctctccaaatcattg 26456908  T
Q  300 tatttctctataaatagagctcatatgtaacctaat 335  Q
    ||||||||||||||||||||||||||||||| ||||    
T  26456907 tatttctctataaatagagctcatatgtaacttaat 26456872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 197 - 289
Target Start/End: Original strand, 25493812 - 25493904
Alignment:
Q  197 atattgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccc 289  Q
    ||||||||||||||||||  ||||||||||||||||||||||  |||| | | ||||| | |||||||||||| |||||||||||||||||||    
T  25493812 atattgttatgaatattataagtggatgtccatatagcaattaggttaatgggtcatactattagcttattggaccatattgtgcttgctccc 25493904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 201 - 289
Target Start/End: Original strand, 25499053 - 25499141
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccc 289  Q
    ||||||||||||||  ||||||||||||||||||||||  |||||| | ||||| | |||||||||||| |||||||||||||||||||    
T  25499053 tgttatgaatattataagtggatgtccatatagcaattaggttattgggtcatactattagcttattggaccatattgtgcttgctccc 25499141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 204 - 321
Target Start/End: Complemental strand, 30027462 - 30027341
Alignment:
Q  204 tatgaatattactagtggatgtccatatagcaattgagttatta----gatcatattgttagcttattgggccatattgtgcttgctccccaagtcattg 299  Q
    |||||||||||  |||||||||| ||||| |||||||||||||     | |||| || ||| |  ||||| |||||||||| |||||||  |||||| ||    
T  30027462 tatgaatattataagtggatgtctatataacaattgagttattgattgggtcatgttattaacaaattggaccatattgtgtttgctcctaaagtcactg 30027363  T
Q  300 tatttctctataaatagagctc 321  Q
    ||||| ||||||||||||||||    
T  30027362 tatttttctataaatagagctc 30027341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 290 - 361
Target Start/End: Complemental strand, 11726553 - 11726483
Alignment:
Q  290 caagtcattgtatttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataat 361  Q
    ||||| ||||||||||||||||||||||||||| ||||||||| |||  | | || ||||||||||||||||    
T  11726553 caagttattgtatttctctataaatagagctcacatgtaaccttatt-gacaacataagagaataatataat 11726483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 240
Target Start/End: Complemental strand, 42162415 - 42162376
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattga 240  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  42162415 tgttatgaatattacaagtggatgtccatatagcaattga 42162376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 11726442 - 11726398
Alignment:
Q  291 aagtcattgtatttctctataaatagagctcatatgtaacctaat 335  Q
    |||||||||| ||||| ||||||||||| ||| ||||||||||||    
T  11726442 aagtcattgtgtttctttataaatagaggtcacatgtaacctaat 11726398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 158; Significance: 5e-84; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 201 - 378
Target Start/End: Complemental strand, 26711637 - 26711460
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26711637 tgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 26711538  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  26711537 atttctctataaatagagctcatatgtaacctaattagacatcacaagagaataatataatcctctttcttctctctc 26711460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 201 - 378
Target Start/End: Complemental strand, 27179130 - 27178953
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||| |||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27179130 tgttatgaatattacaagtggatgtccatataacaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 27179031  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27179030 atttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcctctttcttctctctc 27178953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 201 - 378
Target Start/End: Original strand, 15716623 - 15716800
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15716623 tgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 15716722  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||    
T  15716723 atttctctataaatagagctcatatgtaacgtaattatacatcacaagagaataatataatcttctttcttctctctc 15716800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 201 - 378
Target Start/End: Complemental strand, 27195131 - 27194954
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||| |||||||||| ||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27195131 tgttatgaatattacaagtggatgtctatataacaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 27195032  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27195031 atttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcctctttcttctctctc 27194954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 201 - 378
Target Start/End: Original strand, 15711042 - 15711219
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  15711042 tgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagtttattggaccatattgtgcttgctccccaagtcattgt 15711141  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    |||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||    
T  15711142 atttctttataaatagagctcatatgtaacgtaattatacatcacaagagaataatataatcttctttcttctctctc 15711219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 201 - 378
Target Start/End: Complemental strand, 33498579 - 33498402
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| || ||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  33498579 tgttatgaatattacaagtggatgtccatatagcaattgggttgttggatcatatttttagcttattgggctatattgtgcttgctccccaagtcattgt 33498480  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    |||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  33498479 atttctctataaatggagcttatatgtaacctaattatacatcacaagagaataatataatcctctttcttctctctc 33498402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 201 - 330
Target Start/End: Complemental strand, 33493097 - 33492968
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  33493097 tgttatgaatattacaagtggatgtccatatagcaattgagttgttggatcatattgttagcttattgggctatattgtgcttgctccctaagtcattgt 33492998  T
Q  301 atttctctataaatagagctcatatgtaac 330  Q
    |||||||||||||||||||| |||||||||    
T  33492997 atttctctataaatagagcttatatgtaac 33492968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 286 - 372
Target Start/End: Original strand, 17721823 - 17721909
Alignment:
Q  286 tccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttc 372  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||| ||| |||||    
T  17721823 tccccaagtcattatatttctctataaatagagctcgtatgtaacctaattgtacatcacaagagaataatataatcatctctcttc 17721909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 258 - 362
Target Start/End: Complemental strand, 3343980 - 3343872
Alignment:
Q  258 ttagcttattgggccatattgtgcttgctccc----caagtcattgtatttctctataaatagagctcatatgtaacctaattatatatcacaagagaat 353  Q
    ||||||||||||| ||||||||||||||| ||    ||||||||||||||||| |||||||||| || ||||||||||||||||||||| |||||| |||    
T  3343980 ttagcttattgggtcatattgtgcttgcttccttcccaagtcattgtatttctatataaatagaacttatatgtaacctaattatatataacaagaaaat 3343881  T
Q  354 aatataatc 362  Q
    |||| ||||    
T  3343880 aatagaatc 3343872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 217 - 357
Target Start/End: Complemental strand, 16498889 - 16498728
Alignment:
Q  217 agtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctcc---------------------ccaagtc 295  Q
    ||||||||||||||||||||||| |||||||| | ||| | |||||||||||||||||||||||||||||||                     |||||||    
T  16498889 agtggatgtccatatagcaattgggttattaggttatactattagcttattgggccatattgtgcttgctcccaagtcattggtgcttgttttccaagtc 16498790  T
Q  296 attgtatttctctataaatagagctcatatgtaacctaattatatatcacaagagaataata 357  Q
    ||||||| |||||||||||||||||||||||||||||||||  ||| |||||||||||||||    
T  16498789 attgtatctctctataaatagagctcatatgtaacctaattgcataccacaagagaataata 16498728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 326 - 378
Target Start/End: Complemental strand, 33491559 - 33491507
Alignment:
Q  326 gtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  33491559 gtaacctaattatacatcacaagagaataatataatcctctttcttctctctc 33491507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 294 - 378
Target Start/End: Original strand, 29644986 - 29645070
Alignment:
Q  294 tcattgtatttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    |||||||| ||||||||||||| |  ||| ||||||| |||||||| ||||||| |  ||||||||||||| |||||||||||||    
T  29644986 tcattgtacttctctataaataaaaatcacatgtaacataattatacatcacaaaacgataatataatcctttttcttctctctc 29645070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 336
Target Start/End: Original strand, 9088672 - 9088722
Alignment:
Q  286 tccccaagtcattgtatttctctataaatagagctcatatgtaacctaatt 336  Q
    ||||||| ||||| ||||||||||||||||||||| |||||||| ||||||    
T  9088672 tccccaaatcattatatttctctataaatagagcttatatgtaatctaatt 9088722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 289
Target Start/End: Original strand, 17721717 - 17721805
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccc 289  Q
    ||||||||||||||  ||||||||||||| ||  ||||  |||||| | ||||| |  ||||||||||||| |||||||| ||||||||    
T  17721717 tgttatgaatattataagtggatgtccatgtaagaatttggttattgggtcatactactagcttattgggctatattgtgtttgctccc 17721805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 362
Target Start/End: Complemental strand, 22575932 - 22575864
Alignment:
Q  294 tcattgtatttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatc 362  Q
    |||||||| ||||||||||||||||  || ||||||| |||||  | |  |||||||||||||||||||    
T  22575932 tcattgtacttctctataaatagagaccacatgtaacataattgaacactacaagagaataatataatc 22575864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 201 - 378
Target Start/End: Complemental strand, 351152 - 350975
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  351152 tgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattggtccatattgtgcttgctccccaagtcattgt 351053  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  351052 atttctctataaatagagctcatatgtaacctaattatacatcataagagaataatataatcctctttcttctctctc 350975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 201 - 378
Target Start/End: Complemental strand, 345831 - 345654
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  345831 tgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgcttactccccaagtcattgt 345732  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    |||||||||||||||||||||| |||||||||||||||| |||| |||| ||||||||||||||| ||||||||||||    
T  345731 atttctctataaatagagctcacatgtaacctaattatacatcataagaaaataatataatcctcattcttctctctc 345654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 154; Significance: 1e-81; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 201 - 378
Target Start/End: Complemental strand, 12756322 - 12756145
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||| |||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12756322 tgttatgaatattacaagtggatgtccatataacaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 12756223  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  12756222 atttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcatctttcttctctctc 12756145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 201 - 378
Target Start/End: Complemental strand, 24052194 - 24052017
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||| | |||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  24052194 tgttatgaatattacaaatggatgtccatataacaattgagttattggatcatattgttagtttattgggccatattgtgcttgctccccaagtcattgt 24052095  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  24052094 atttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcttctttcttctctctc 24052017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 200 - 378
Target Start/End: Original strand, 41043477 - 41043655
Alignment:
Q  200 ttgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattg 299  Q
    |||||||||||||||| |||||||||| |||||||||||| |||||| ||||||||||||||||||||||||  |||||||||| |||||||||||||||    
T  41043477 ttgttatgaatattacaagtggatgtctatatagcaattgggttattggatcatattgttagcttattgggctttattgtgcttactccccaagtcattg 41043576  T
Q  300 tatttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||| ||||    
T  41043577 tatttctctataaatagagctcatatgtaacctaattatacatcacaagagaatagcataatcctctttcttctatctc 41043655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 201 - 378
Target Start/End: Original strand, 41048858 - 41049028
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| |||       ||||||||||||| | |||| || |||||||||||||||||||    
T  41048858 tgttatgaatattacaagtggatgtccatatagcaattgagttatttgat-------ttagcttattgggtcttattatgtttgctccccaagtcattgt 41048950  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    |||| | |||||||||||||||||||||||||||||||| ||||||||| ||||| |||||| |||||||||| ||||    
T  41048951 atttatttataaatagagctcatatgtaacctaattatacatcacaagataataacataatcttctttcttctatctc 41049028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 294 - 378
Target Start/End: Original strand, 2232107 - 2232190
Alignment:
Q  294 tcattgtatttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    ||||| || ||||||||||||| || ||||||||||| || || || | ||||||| ||||||||||||||||||||||||||||    
T  2232107 tcattatacttctctataaatatagatcatatgtaacata-ttgtacaccacaagataataatataatcctctttcttctctctc 2232190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 375
Target Start/End: Original strand, 7546047 - 7546125
Alignment:
Q  297 ttgtatttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctct 375  Q
    ||||| |||||||||||||||  ||| ||||||| | ||| |||| |||||||||| ||||||||| | | ||||||||    
T  7546047 ttgtacttctctataaatagatatcacatgtaacattattgtataacacaagagaacaatataatcatttctcttctct 7546125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 330
Target Start/End: Complemental strand, 24042924 - 24042894
Alignment:
Q  300 tatttctctataaatagagctcatatgtaac 330  Q
    |||||||||||||||||||||||||||||||    
T  24042924 tatttctctataaatagagctcatatgtaac 24042894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 378
Target Start/End: Complemental strand, 13242922 - 13242837
Alignment:
Q  294 tcattgtatttctctataaatagagctcatatgt-aacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    |||||||| |||||||||||||||| ||| |||| ||  ||||| || |||| |||| |||||||| ||| ||| |||||||||||    
T  13242922 tcattgtacttctctataaatagagatcacatgtaaatataattttacatcataagaaaataatatcatcttctctcttctctctc 13242837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 201 - 378
Target Start/End: Complemental strand, 20192752 - 20192575
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  20192752 tgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgcttgctcccaaagtcattgt 20192653  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  20192652 atttctctataaatagagcttatatgtaacctaattatacatcacaagagaataatataatcctctttcttctctctc 20192575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 22577411 - 22577602
Alignment:
Q  17 atataataactcattaaccacgtaatgaactgaatcaatcacccatttaaattgcattaactaaactaattttctattggatgatcgtttgtttctt--- 113  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||       
T  22577411 atataataactcattaaccacataatgaactgaatcaatcacccatttaaattgcattaactaaactaatttgctattggataatcgtttgtttcttctt 22577510  T
Q  114 ----atgtcttgtcatcactcctaatctattttctttccttcttgaagacttcatcatatgtatatataatttcctctattaaatctatatt 201  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22577511 aaatatgtcttgtcatcactcctaatctattttctttccttcttgaagacttcatcatatgtatatataatttcctctattaaatctatatt 22577602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 197 - 378
Target Start/End: Original strand, 6156546 - 6156727
Alignment:
Q  197 atattgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtca 296  Q
    ||||||||||||||||||| |||| |||| ||||||| ||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6156546 atattgttatgaatattacaagtgaatgttcatatagaaattgggttattggatcatattgttagtttattgggccatattgtgcttgctccccaagtca 6156645  T
Q  297 ttgtatttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6156646 ttgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcctctttcttctctctc 6156727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 201 - 378
Target Start/End: Complemental strand, 20198116 - 20197939
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||| | ||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  20198116 tgttatgaatattacaaatggatgtccatatagcaattgggttattggatcatattgttagtttattgggccatattgtgcttgctcccaaagtcattgt 20198017  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  20198016 atttctctataaatagagcttatatgtaacctaattatacatcacaagagaataatataatcctctttcttctctctc 20197939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 201 - 378
Target Start/End: Original strand, 6162247 - 6162424
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||| ||||||| ||||||||| ||||| |||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  6162247 tgttatgaatattacaagtggatatccatatagaaattgggttattggatcatattgttagtttattgggtcatattgtgcttgctccccaagtcattgt 6162346  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  6162347 atttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcatctttcttctctctc 6162424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 201 - 373
Target Start/End: Original strand, 53982094 - 53982265
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||| |||||||||||||||| ||||||||||    
T  53982094 tgttatgaatattacaagtggatgtccatatagcaattgggttatttgatcatactgttagcttattgggccttattgtgcttgctccc-aagtcattgt 53982192  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttct 373  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||    
T  53982193 atttctctataaatagagctcatatgtaacctaattatacatcacaagagaataacataatcctcttttttct 53982265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 297 - 357
Target Start/End: Complemental strand, 12733982 - 12733922
Alignment:
Q  297 ttgtatttctctataaatagagctcatatgtaacctaattatatatcacaagagaataata 357  Q
    |||||||||||||||||||||||||| |||||||||||||   ||||||||||||||||||    
T  12733982 ttgtatttctctataaatagagctcacatgtaacctaattggttatcacaagagaataata 12733922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 294 - 377
Target Start/End: Original strand, 53529819 - 53529902
Alignment:
Q  294 tcattgtatttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctct 377  Q
    |||||| | ||||||||||||||||  || || |||| |||   |||||||||| ||||||||||||| |||| ||||||||||    
T  53529819 tcattgcacttctctataaatagagaccacatataacataacggtatatcacaatagaataatataattctctctcttctctct 53529902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 373
Target Start/End: Original strand, 7156154 - 7156238
Alignment:
Q  289 ccaagtcattgtatttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttct 373  Q
    |||||| ||||||||| || ||||||| |||||  | ||||||||||| | ||||| |||||||| ||  |||||||| ||||||    
T  7156154 ccaagttattgtatttttcaataaataaagctcggacgtaacctaattgtgtatcataagagaatgatcgaatcctctctcttct 7156238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 362
Target Start/End: Complemental strand, 26868288 - 26868220
Alignment:
Q  294 tcattgtatttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatc 362  Q
    |||||||||||||||| |||||||| ||| || |||| |||| | |||||  |||||||||||| ||||    
T  26868288 tcattgtatttctctacaaatagagatcacatataacataatcacatatcttaagagaataatagaatc 26868220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 153; Significance: 5e-81; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 201 - 377
Target Start/End: Original strand, 14855936 - 14856112
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  14855936 tgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcatattgggccatattgtgcttgctccccacgtcattgt 14856035  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctct 377  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  14856036 atttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcctctttcttctctct 14856112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 197 - 378
Target Start/End: Original strand, 14847074 - 14847255
Alignment:
Q  197 atattgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtca 296  Q
    ||||||||||||||||||| ||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  14847074 atattgttatgaatattacaagtggatatccatatagcaattgggttatttgatcatattgttagcttattgggccatattgtgattgctccccacgtca 14847173  T
Q  297 ttgtatttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  14847174 ttgtatttctctataaatagaactcatatgtaacctaattatacatcacaagagaataatataatcttctttcttctctctc 14847255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 201 - 378
Target Start/End: Original strand, 26680570 - 26680746
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||| ||||||||||||| ||||||||||||| || ||||||| |||||| |||||||||| |||||||||||||||| ||||||||||    
T  26680570 tgttatgaatattacaagtggatgtccatgtagcaattgagttttttgatcatactgttagtttattgggccttattgtgcttgctccc-aagtcattgt 26680668  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||    
T  26680669 atttctctataaatagagctcatatgtaacctaattatacatcacaagagaataacataatcctctttcttctatctc 26680746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 201 - 288
Target Start/End: Original strand, 6933039 - 6933126
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctcc 288  Q
    ||||||||||||||  ||||||||||||||||||||||| |||||| | ||||| |||||||||||||| | |||||||| |||||||    
T  6933039 tgttatgaatattataagtggatgtccatatagcaattgggttattgggtcatactgttagcttattggactatattgtgtttgctcc 6933126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 294 - 378
Target Start/End: Original strand, 31023400 - 31023484
Alignment:
Q  294 tcattgtatttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    |||||||| |||| ||||||||||| ||| ||||||| ||||| ||||||||| || |||||||||||| ||| |||||| ||||    
T  31023400 tcattgtagttctatataaatagagatcacatgtaacataattgtatatcacatgaaaataatataatcatctctcttctttctc 31023484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 254
Target Start/End: Original strand, 6924848 - 6924902
Alignment:
Q  200 ttgttatgaatattactagtggatgtccatatagcaattgagttattagatcata 254  Q
    |||||||||||||||  |||||||||| |||||||||||| |||||| |||||||    
T  6924848 ttgttatgaatattataagtggatgtcgatatagcaattgggttattggatcata 6924902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 357
Target Start/End: Complemental strand, 13462020 - 13461951
Alignment:
Q  290 caagtcattgtatttctctataaat-agagctcatatgtaacctaattatat-atcacaagagaataata 357  Q
    ||||| |||||||||||||||||||  ||||||||||| ||| ||||| ||| |||||||||||||||||    
T  13462020 caagttattgtatttctctataaatgggagctcatatgaaacataattgtatgatcacaagagaataata 13461951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 362
Target Start/End: Complemental strand, 10345793 - 10345722
Alignment:
Q  290 caagtcattgtatttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatc 362  Q
    ||||||||| ||||||| ||||||||||| ||| ||||||| |||||  | | ||||||||||||||||||||    
T  10345793 caagtcattctatttctatataaatagagttcacatgtaacttaatt-gacaacacaagagaataatataatc 10345722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 276 - 357
Target Start/End: Complemental strand, 13466845 - 13466762
Alignment:
Q  276 ttgtgcttgctccccaagtcattgtatttctctataaat-agagctcatatgtaacctaattatat-atcacaagagaataata 357  Q
    ||||||||| |  |||||||||| ||||| ||||||||| ||| ||||||| |||| ||||| ||| |||||||||||||||||    
T  13466845 ttgtgcttgttttccaagtcattatatttttctataaatgagatctcatatataacttaattgtatgatcacaagagaataata 13466762  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 10345903 - 10345858
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttatt 246  Q
    ||||||||||||||| ||||||||| |||||| ||||| |||||||    
T  10345903 tgttatgaatattacaagtggatgttcatataacaattaagttatt 10345858  T

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Target: scaffold0211 (Bit Score: 138; Significance: 5e-72; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 200 - 377
Target Start/End: Original strand, 26902 - 27079
Alignment:
Q  200 ttgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattg 299  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26902 ttgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggtcatattgtgcttgctccccaagtcattg 27001  T
Q  300 tatttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctct 377  Q
    ||||||||||||||||||||||||||||||| |||| | | || | ||||||||||||||||||||||||||||||||    
T  27002 tatttctctataaatagagctcatatgtaacataataaaacataaaaagagaataatataatcctctttcttctctct 27079  T

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Target: scaffold0169 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 228 - 378
Target Start/End: Original strand, 10984 - 11134
Alignment:
Q  228 atatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtatttctctataaatagagctcatatgt 327  Q
    |||||||||||| |||||| | ||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  10984 atatagcaattgggttattgggtcatactattagcttattgggtcatattgtgcttgctccccaagtcattgtatttctctataaatagagctcatatat 11083  T
Q  328 aacctaattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    |||||||||  ||||  |||||||||||||||||| |||||||||||||||    
T  11084 aacctaattggatataccaagagaataatataatcatctttcttctctctc 11134  T

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Target: scaffold0169; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 201 - 359
Target Start/End: Original strand, 8695 - 8853
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 300  Q
    ||||||||||||||  |||||||||| |||||||||||| |||||| | ||||| | ||||||||||||| |||||||||||||||||||||||||||||    
T  8695 tgttatgaatattataagtggatgtctatatagcaattgggttattgggtcatactattagcttattgggtcatattgtgcttgctccccaagtcattgt 8794  T
Q  301 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatata 359  Q
    |||||||||||||||||| | |||||||| ||||||  |||   |||||||||||||||    
T  8795 atttctctataaatagagattatatgtaatctaattggatacaccaagagaataatata 8853  T

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Target: scaffold0121 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 278 - 378
Target Start/End: Complemental strand, 11509 - 11409
Alignment:
Q  278 gtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctct 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||   ||||||||||||||||||||||||||||||||    
T  11509 gtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaatggtacatactaagagaataatataatcctctttcttctctct 11410  T
Q  378 c 378  Q
    |    
T  11409 c 11409  T

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Target: scaffold0121; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 280
Target Start/End: Complemental strand, 11611 - 11529
Alignment:
Q  198 tattgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtg 280  Q
    |||||||||||||||||  |||||||||||| |||||||||  |||||| | ||||| | |||||||||||| ||||||||||    
T  11611 tattgttatgaatattataagtggatgtccacatagcaattaggttattgggtcatactattagcttattggaccatattgtg 11529  T

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Target: scaffold0124 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 278 - 377
Target Start/End: Original strand, 39540 - 39639
Alignment:
Q  278 gtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcctctttcttctctct 377  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  || ||   ||||||||||||||||||||||||||||||||    
T  39540 gtgcttgctcctcaagtcattgtatttctctataaatagagctcatatgtaacctaatggtacatactaagagaataatataatcctctttcttctctct 39639  T

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Target: scaffold0124; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 201 - 289
Target Start/End: Original strand, 39441 - 39529
Alignment:
Q  201 tgttatgaatattactagtggatgtccatatagcaattgagttattagatcatattgttagcttattgggccatattgtgcttgctccc 289  Q
    ||||||||||||||  |||||||||||||||| |||||  |||||| | || || | |||||||||||| |||||||||||||||||||    
T  39441 tgttatgaatattataagtggatgtccatataacaattaggttattgggtcgtactattagcttattggaccatattgtgcttgctccc 39529  T

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Target: scaffold1317 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1317
Description:

Target: scaffold1317; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 332 - 378
Target Start/End: Complemental strand, 2068 - 2022
Alignment:
Q  332 taattatatatcacaagagaataatataatcctctttcttctctctc 378  Q
    |||| ||| ||||||||||||||||||| ||||||||||||| ||||    
T  2068 taatgatacatcacaagagaataatatattcctctttcttctatctc 2022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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