View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20569_high_18 (Length: 331)
Name: NF20569_high_18
Description: NF20569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20569_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 13 - 315
Target Start/End: Complemental strand, 40415128 - 40414827
Alignment:
| Q |
13 |
cagatcactagcacaactccaatggcacgcgaagtggttgtcgaggtctgcgacatagtaacagagcgcggtgctcgcctagtcggagctggaattgtat |
112 |
Q |
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| T |
40415128 |
cagatcactagcacaactccaatggcacgcgaagtggttgtcgaggtctgcaacatagtaacagagcgcggtgctcgcctagtcgg-gctggaattgtat |
40415030 |
T |
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| Q |
113 |
caataatagaaaaagcgtagttacggttgaaggtggactttatgaacattataggattttcagaaattaccttcatagtagtgtatgggaaatgcttggc |
212 |
Q |
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|||||||||||||||| | |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40415029 |
caataatagaaaaagcatggttacggttgaaattgaactttatgaacattataggattttcagaaattaccttcatagtagtgtatgggaaatgctcggc |
40414930 |
T |
|
| Q |
213 |
aatgatctttcggataatgtcattattgaacattctcatggtggctctggatctggtgctctatttcttgttgctgctgctgcttctcacattcccacac |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
40414929 |
aatgatctttcggataatgtcattattgaacattctcatggtggctctggatctggtgctctatttcttgctgttgctgctgcttctcacattcccacac |
40414830 |
T |
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| Q |
313 |
aac |
315 |
Q |
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||| |
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| T |
40414829 |
aac |
40414827 |
T |
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