View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20569_high_19 (Length: 324)

Name: NF20569_high_19
Description: NF20569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20569_high_19
NF20569_high_19
[»] chr1 (6 HSPs)
chr1 (13-307)||(15375482-15375778)
chr1 (203-300)||(31056322-31056417)
chr1 (203-300)||(25383336-25383431)
chr1 (203-300)||(38145663-38145758)
chr1 (143-179)||(50588910-50588946)
chr1 (142-179)||(47295357-47295394)
[»] chr4 (3 HSPs)
chr4 (203-300)||(26958926-26959021)
chr4 (203-295)||(48165458-48165548)
chr4 (203-300)||(5187097-5187192)
[»] chr7 (4 HSPs)
chr7 (203-300)||(3812957-3813052)
chr7 (203-300)||(35149788-35149884)
chr7 (203-295)||(350105-350195)
chr7 (142-186)||(47456700-47456744)
[»] chr6 (8 HSPs)
chr6 (203-300)||(21772382-21772477)
chr6 (13-105)||(28299582-28299674)
chr6 (13-105)||(28512399-28512491)
chr6 (203-300)||(6101772-6101867)
chr6 (203-300)||(17579943-17580037)
chr6 (253-295)||(21192725-21192767)
chr6 (203-300)||(32031263-32031358)
chr6 (256-300)||(8652651-8652695)
[»] scaffold0208 (2 HSPs)
scaffold0208 (203-300)||(29402-29498)
scaffold0208 (203-300)||(10668-10763)
[»] chr8 (2 HSPs)
chr8 (203-295)||(32895296-32895386)
chr8 (203-300)||(5543963-5544058)
[»] chr2 (3 HSPs)
chr2 (203-295)||(35086465-35086555)
chr2 (203-296)||(23341863-23341954)
chr2 (203-300)||(13460304-13460399)
[»] chr5 (5 HSPs)
chr5 (203-300)||(32096003-32096098)
chr5 (203-297)||(26508441-26508532)
chr5 (203-300)||(12687969-12688064)
chr5 (203-300)||(28527174-28527269)
chr5 (203-300)||(41295538-41295633)
[»] chr3 (6 HSPs)
chr3 (203-300)||(10762447-10762542)
chr3 (203-300)||(42193021-42193116)
chr3 (203-300)||(49155955-49156050)
chr3 (203-300)||(11841534-11841629)
chr3 (256-300)||(10240055-10240099)
chr3 (256-300)||(38450910-38450954)


Alignment Details
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 13 - 307
Target Start/End: Original strand, 15375482 - 15375778
Alignment:
Q  13 aatatcaataacattttacaatgggaaatgaaatgaggtacctgactttattactgcaccttccgtcacaatttccttcttatttatattcacggcgcct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||| ||    
T  15375482 aatatcaataacattttacaatgggaaatgaaatgaggtacctgactttattagtgcaccttccgtcacaatttccttctcttttatattcacggcgtct 15375581  T
Q  113 ttcgtttcgtttgtatttctgtttcaccggtt------cgtcttgagcagagttctagtttttaataaaatttattgattnnnnnnnn-cataactaata 205  Q
    |||||||     |||||| ||||||| |||||      |||||||| ||| ||||| |||||||||||||||| ||||||         |||||||||||    
T  15375582 ttcgttt-----gtatttatgtttcatcggtttctgttcgtcttgaacagggttctggtttttaataaaatttgttgattaaaaagcaacataactaata 15375676  T
Q  206 tatcattgttgagtaaataaaatataattgacacgttaaacttgaaaaatataaatttactcccactgagcttactaaatccacaactctccatattact 305  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  15375677 tatcattgttgagtaaataaaatataattaacacgttaaacttgaaaaatataaatttactcccactgaacttactaaatccacaactctccataatact 15375776  T

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Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 203 - 300
Target Start/End: Complemental strand, 31056417 - 31056322
Alignment:
Q  203 atatatcattgttgagtaaataaaatataattgacacgttaaacttgaaaaatataaatttactcccactgagcttactaaatccacaactctccata 300  Q
    ||||||||| ||||| |||||||||||||||| |||| ||||||||||||  ||||||||| ||||||||||||||||||||||||||| ||||||||    
T  31056417 atatatcatcgttgactaaataaaatataatttacacattaaacttgaaa--tataaattttctcccactgagcttactaaatccacaattctccata 31056322  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 300
Target Start/End: Original strand, 25383336 - 25383431
Alignment:
Q  203 atatatcattgttgagtaaataaaatataattgacacgttaaacttgaaaaatataaatttactcccactgagcttactaaatccacaactctccata 300  Q
    ||||||||| ||||| | ||||||||| ||||||||  ||||||| ||||  |||||| ||||||||||||| ||| |||| ||||||| ||||||||    
T  25383336 atatatcatcgttgactgaataaaataaaattgacatattaaactagaaa--tataaaattactcccactgaacttgctaagtccacaattctccata 25383431  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 300
Target Start/End: Original strand, 38145663 - 38145758
Alignment:
Q  203 atatatcattgttgagtaaataaaatataattgacacgttaaacttgaaaaatataaatttactcccactgagcttactaaatccacaactctccata 300  Q
    ||||||||| ||||| | ||||||||| ||||||||  ||||||| ||||  |||||| ||||| ||| ||| ||| |||||||||||| ||||||||    
T  38145663 atatatcatcgttgattgaataaaataaaattgacatattaaactagaaa--tataaaattacttccaatgaacttgctaaatccacaattctccata 38145758  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 50588946 - 50588910
Alignment:
Q  143 ttcgtcttgagcagagttctagtttttaataaaattt 179  Q
    |||||||||||||||| ||||||||||||||||||||    
T  50588946 ttcgtcttgagcagagatctagtttttaataaaattt 50588910  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 179
Target Start/End: Complemental strand, 47295394 - 47295357
Alignment:
Q  142 gttcgtcttgagcagagttctagtttttaataaaattt 179  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  47295394 gttcgtcttgagcagagatatagtttttaataaaattt 47295357  T

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Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 203 - 300
Target Start/End: Original strand, 26958926 - 26959021
Alignment:
Q  203 atatatcattgttgagtaaataaaatataattgacacgttaaacttgaaaaatataaatttactcccactgagcttactaaatccacaactctccata 300  Q
    ||||||||| ||||| ||||||||||||||||||||| ||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||    
T  26958926 atatatcatcgttgactaaataaaatataattgacacattaaacttgaaa--tataaattttctcccactgagcttactaaatccacaactctccata 26959021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 203 - 295
Target Start/End: Complemental strand, 48165548 - 48165458
Alignment:
Q  203 atatatcattgttgagtaaataaaatataattgacacgttaaacttgaaaaatataaatttactcccactgagcttactaaatccacaactct 295  Q
    ||||||||| ||||| ||||||||||| ||||||||  ||||||| | ||  |||||| ||||||||||| ||||||||||||||||||||||    
T  48165548 atatatcatcgttgactaaataaaataaaattgacatattaaactaggaa--tataaaattactcccactaagcttactaaatccacaactct 48165458  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 300
Target Start/End: Complemental strand, 5187192 - 5187097
Alignment:
Q  203 atatatcattgttgagtaaataaaatataattgacacgttaaacttgaaaaatataaatttactcccactgagcttactaaatccacaactctccata 300  Q
    ||||||||| ||||| ||||||||||| ||  | ||| ||||||| ||||  ||||| ||||| ||||||||||||||||||||||||| ||| ||||    
T  5187192 atatatcatagttgactaaataaaataaaaccggcacattaaactagaaa--tataagtttacccccactgagcttactaaatccacaattcttcata 5187097  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 203 - 300
Target Start/End: Original strand, 3812957 - 3813052
Alignment:
Q  203 atatatcattgttgagtaaataaaatataattgacacgttaaacttgaaaaatataaatttactcccactgagcttactaaatccacaactctccata 300  Q
    ||||||||| ||||| |||||||||||||||| |||| ||||||||||||  ||||||||| ||||||||||||||||||||||||||| ||||||||    
T  3812957 atatatcatcgttgactaaataaaatataatttacacattaaacttgaaa--tataaattttctcccactgagcttactaaatccacaattctccata 3813052  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 203 - 300
Target Start/End: Original strand, 35149788 - 35149884
Alignment:
Q  203 atatatcattgttgagtaaataaaatataattgacacgttaaacttgaaaaatataaatttactcccactgagcttactaaatccacaactctccata 300  Q
    ||||||||| ||||| |||||||||||||||||||||  |||| |   ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  35149788 atatatcatcgttgactaaataaaatataattgacac-ataaaatatcaaaatataaatttactcccactgagcttactaaatccacaattctccata 35149884  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 203 - 295
Target Start/End: Complemental strand, 350195 - 350105
Alignment:
Q  203 atatatcattgttgagtaaataaaatataattgacacgttaaacttgaaaaatataaatttactcccactgagcttactaaatccacaactct 295  Q
    ||||||||| ||||| ||||||||||| ||||||||  ||||||| | ||  |||||| ||||||||||| ||||||||||||||||||||||    
T  350195 atatatcatcgttgactaaataaaataaaattgacatattaaactaggaa--tataaaattactcccactaagcttactaaatccacaactct 350105  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 47456744 - 47456700
Alignment:
Q  142 gttcgtcttgagcagagttctagtttttaataaaatttattgatt 186  Q
    ||||||||||||||||| ||| |||||||||||||||| ||||||    
T  47456744 gttcgtcttgagcagagatctggtttttaataaaatttgttgatt 47456700  T

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Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 203 - 300
Target Start/End: Original strand, 21772382 - 21772477
Alignment:
Q  203 atatatcattgttgagtaaataaaatataattgacacgttaaacttgaaaaatataaatttactcccactgagcttactaaatccacaactctccata 300  Q
    ||||||||| ||||| ||||||||||||||||||||| |||||||||  |||||||||||| ||||| | |||||||||||| |||||||||||||||    
T  21772382 atatatcatcgttgactaaataaaatataattgacacattaaacttg--aaatataaattttctccctcggagcttactaaaaccacaactctccata 21772477  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 28299582 - 28299674
Alignment:
Q  13 aatatcaataacattttacaatgggaaatgaaatgaggtacctgactttattactgcaccttccgtcacaatttccttcttatttatattcac 105  Q
    ||||||||| ||||| | ||||||||||||||||||||||||||||||  ||| |||||||||| |||||||||| |||| || |||||||||    
T  28299582 aatatcaatgacattctccaatgggaaatgaaatgaggtacctgacttcgttagtgcaccttccttcacaatttcattctcatctatattcac 28299674  T

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Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 28512491 - 28512399
Alignment:
Q  13 aatatcaataacattttacaatgggaaatgaaatgaggtacctgactttattactgcaccttccgtcacaatttccttcttatttatattcac 105  Q
    ||||||||| ||||| | ||||||||||||||||||||||||||||||  ||| |||||||||| |||||||||| |||| || |||||||||    
T  28512491 aatatcaatgacattctccaatgggaaatgaaatgaggtacctgacttcgttagtgcaccttccttcacaatttcattctcatctatattcac 28512399  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 300
Target Start/End: Complemental strand, 6101867 - 6101772
Alignment:
Q  203 atatatcattgttgagtaaataaaatataattgacacgttaaacttgaaaaatataaatttactcccactgagcttactaaatccacaactctccata 300  Q
    ||||||||| |||||||| |||||||| ||||||||  ||||||| | |   |||||| ||||||||||||| ||| |||||||||||| ||||||||    
T  6101867 atatatcatcgttgagtatataaaataaaattgacatattaaactaggag--tataaacttactcccactgaacttgctaaatccacaattctccata 6101772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 300
Target Start/End: Complemental strand, 17580037 - 17579943
Alignment:
Q  203 atatatcattgttgagtaaataaaatataattgacacgttaaacttgaaaaatataaatttactcccactgagcttactaaatccacaactctccata 300  Q
    ||||||||| ||||| |||||||| || ||||||||  |||||||  | ||||||||| |||||||||||||  || |||||||||||| ||||||||    
T  17580037 atatatcatcgttgactaaataaagta-aattgacatattaaact--ataaatataaacttactcccactgaatttgctaaatccacaattctccata 17579943  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 295
Target Start/End: Original strand, 21192725 - 21192767
Alignment:
Q  253 aatataaatttactcccactgagcttactaaatccacaactct 295  Q
    |||||||| ||||||||||| ||||||||||||||||||||||    
T  21192725 aatataaaattactcccactaagcttactaaatccacaactct 21192767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 300
Target Start/End: Original strand, 32031263 - 32031358
Alignment:
Q  203 atatatcattgttgagtaaataaaatataattgacacgttaaacttgaaaaatataaatttactcccactgagcttactaaatccacaactctccata 300  Q
    |||||||||  |||| ||||||||||| ||||||||  |||||||  |  |||||||| || ||||||||||  || |||||||||||| ||||||||    
T  32031263 atatatcatgattgactaaataaaataaaattgacatattaaact--atgaatataaactttctcccactgaatttgctaaatccacaattctccata 32031358  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 300
Target Start/End: Original strand, 8652651 - 8652695
Alignment:
Q  256 ataaatttactcccactgagcttactaaatccacaactctccata 300  Q
    ||||| ||||||||||||| |||  ||||||||||||||||||||    
T  8652651 ataaacttactcccactgaacttgttaaatccacaactctccata 8652695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 203 - 300
Target Start/End: Complemental strand, 29498 - 29402
Alignment:
Q  203 atatatcattgttgagtaaataaaatataattgacacgttaaacttgaaaaatataaatttactcccactgagcttactaaatccacaactctccata 300  Q
    ||||||| | ||||| ||||||||||| ||||||||| |||||  | |||| ||||||||||||||||||||||||||||||| || || ||||||||    
T  29498 atatatcgtagttgactaaataaaataaaattgacacattaaaactcaaaa-tataaatttactcccactgagcttactaaattcataattctccata 29402  T

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Target: scaffold0208; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 300
Target Start/End: Complemental strand, 10763 - 10668
Alignment:
Q  203 atatatcattgttgagtaaataaaatataattgacacgttaaacttgaaaaatataaatttactcccactgagcttactaaatccacaactctccata 300  Q
    ||||||||| ||||| | ||||||||| ||||||||  ||||||| ||||  |||||| ||||||||||||| ||| |||||||||||| ||||||||    
T  10763 atatatcatcgttgactgaataaaataaaattgacatattaaactagaaa--tataaaattactcccactgaacttgctaaatccacaattctccata 10668  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 203 - 295
Target Start/End: Complemental strand, 32895386 - 32895296
Alignment:
Q  203 atatatcattgttgagtaaataaaatataattgacacgttaaacttgaaaaatataaatttactcccactgagcttactaaatccacaactct 295  Q
    ||||||||| ||||| ||||||||||| ||||||||  ||||||| | ||  |||||| ||||||||||| ||||||||||||||||||||||    
T  32895386 atatatcatcgttgactaaataaaataaaattgacatattaaactagcaa--tataaaattactcccactaagcttactaaatccacaactct 32895296  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 300
Target Start/End: Original strand, 5543963 - 5544058
Alignment:
Q  203 atatatcattgttgagtaaataaaatataattgacacgttaaacttgaaaaatataaatttactcccactgagcttactaaatccacaactctccata 300  Q
    ||||||||| ||||| | ||||||||| |||||||   ||||||| ||||  |||||| |||||||||| || ||| |||||||||||| ||||||||    
T  5543963 atatatcatcgttgattgaataaaataaaattgacgtattaaactagaaa--tataaaattactcccaccgaacttgctaaatccacaattctccata 5544058  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 203 - 295
Target Start/End: Original strand, 35086465 - 35086555
Alignment:
Q  203 atatatcattgttgagtaaataaaatataattgacacgttaaacttgaaaaatataaatttactcccactgagcttactaaatccacaactct 295  Q
    ||||||||| ||||| ||||||||||| ||||||||  ||||||| | ||  |||||| ||||||||||| ||||||||||||||||||||||    
T  35086465 atatatcatcgttgactaaataaaataaaattgacatattaaactagcaa--tataaaattactcccactaagcttactaaatccacaactct 35086555  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 296
Target Start/End: Complemental strand, 23341954 - 23341863
Alignment:
Q  203 atatatcattgttgagtaaataaaatataattgacacgttaaacttgaaaaatataaatttactcccactgagcttactaaatccacaactctc 296  Q
    ||||||||||||||| ||||||||||| ||| ||||| | |||||   |||| ||||||||||||||||||| |||||||||| || |||||||    
T  23341954 atatatcattgttgactaaataaaataaaatcgacacataaaactc--aaaacataaatttactcccactgaacttactaaattcaaaactctc 23341863  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 300
Target Start/End: Complemental strand, 13460399 - 13460304
Alignment:
Q  203 atatatcattgttgagtaaataaaatataattgacacgttaaacttgaaaaatataaatttactcccactgagcttactaaatccacaactctccata 300  Q
    ||||||||| ||||| | ||||||||| ||||||||  ||||||| ||||  |||||| ||||||||||||| ||| |||| ||||||| ||||||||    
T  13460399 atatatcatcgttgactgaataaaataaaattgacatattaaactagaaa--tataaaattactcccactgaacttgctaagtccacaattctccata 13460304  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 300
Target Start/End: Original strand, 32096003 - 32096098
Alignment:
Q  203 atatatcattgttgagtaaataaaatataattgacacgttaaacttgaaaaatataaatttactcccactgagcttactaaatccacaactctccata 300  Q
    ||||||||| ||||| | ||||||||| ||||||||  ||||||| ||||  |||||| ||||||||||||| ||| |||||||||||| ||||||||    
T  32096003 atatatcatcgttgactgaataaaataaaattgacatattaaactagaaa--tataaaattactcccactgaacttgctaaatccacaattctccata 32096098  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 297
Target Start/End: Complemental strand, 26508532 - 26508441
Alignment:
Q  203 atatatcattgttgagtaaataaaatataattgacacgttaaacttgaaaaatataaatttactcccactgagcttactaaatccacaactctcc 297  Q
    |||| |||||||||| ||||||||||| |||||| ||  |||| | || |  |||||||||||||||||||||||||| ||||||||||||||||    
T  26508532 atatttcattgttgactaaataaaataaaattgatacactaaaatagata--tataaatttactcccactgagcttac-aaatccacaactctcc 26508441  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 300
Target Start/End: Original strand, 12687969 - 12688064
Alignment:
Q  203 atatatcattgttgagtaaataaaatataattgacacgttaaacttgaaaaatataaatttactcccactgagcttactaaatccacaactctccata 300  Q
    ||||||||| ||||| | ||||||||| ||||||||  ||||||| ||||  |||||| ||||||||||||| |||  ||||||||||| ||||||||    
T  12687969 atatatcatcgttgactgaataaaataaaattgacatattaaactagaaa--tataaaattactcccactgaacttgttaaatccacaattctccata 12688064  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 300
Target Start/End: Original strand, 28527174 - 28527269
Alignment:
Q  203 atatatcattgttgagtaaataaaatataattgacacgttaaacttgaaaaatataaatttactcccactgagcttactaaatccacaactctccata 300  Q
    ||||||||| ||||| | ||||||||| |||| |||  ||||||| ||||  |||||| ||||||||||||| ||| |||||||||||| ||||||||    
T  28527174 atatatcatcgttgactgaataaaataaaattaacatattaaactagaaa--tataaaattactcccactgaacttgctaaatccacaattctccata 28527269  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 300
Target Start/End: Complemental strand, 41295633 - 41295538
Alignment:
Q  203 atatatcattgttgagtaaataaaatataattgacacgttaaacttgaaaaatataaatttactcccactgagcttactaaatccacaactctccata 300  Q
    ||||||||| ||||| | ||||||||| |||||||   ||||||| ||||  |||||| ||||||||||||| | | |||||||||||| ||||||||    
T  41295633 atatatcatcgttgattgaataaaataaaattgacgtattaaactagaaa--tataaaattactcccactgaacctgctaaatccacaattctccata 41295538  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 300
Target Start/End: Original strand, 10762447 - 10762542
Alignment:
Q  203 atatatcattgttgagtaaataaaatataattgacacgttaaacttgaaaaatataaatttactcccactgagcttactaaatccacaactctccata 300  Q
    ||||||||| ||||| | ||||||||| ||||||||  ||||||| ||||  |||||| ||||||||||||| ||| |||||||||||| ||||||||    
T  10762447 atatatcatcgttgactgaataaaataaaattgacatattaaactagaaa--tataaaattactcccactgaacttgctaaatccacaattctccata 10762542  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 300
Target Start/End: Original strand, 42193021 - 42193116
Alignment:
Q  203 atatatcattgttgagtaaataaaatataattgacacgttaaacttgaaaaatataaatttactcccactgagcttactaaatccacaactctccata 300  Q
    ||||||||| ||||| | ||||||||| ||||||||  ||||||| ||||  |||||| ||||||||||||| ||| |||| ||||||| ||||||||    
T  42193021 atatatcatcgttgactgaataaaataaaattgacatattaaactagaaa--tataaaattactcccactgaacttgctaagtccacaattctccata 42193116  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 300
Target Start/End: Complemental strand, 49156050 - 49155955
Alignment:
Q  203 atatatcattgttgagtaaataaaatataattgacacgttaaacttgaaaaatataaatttactcccactgagcttactaaatccacaactctccata 300  Q
    ||||||||| ||||| | ||||||||| |||| |||  ||||||| ||||  |||||| ||||||||||||| ||| |||||||||||| ||||||||    
T  49156050 atatatcatcgttgactgaataaaataaaattaacatattaaactagaaa--tataaaattactcccactgaacttgctaaatccacaattctccata 49155955  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 300
Target Start/End: Original strand, 11841534 - 11841629
Alignment:
Q  203 atatatcattgttgagtaaataaaatataattgacacgttaaacttgaaaaatataaatttactcccactgagcttactaaatccacaactctccata 300  Q
    ||||||||| ||||| ||||||||||| ||||||||  || ||||  |  |||||||| |||||| |||||| ||| |||||||||||| ||||||||    
T  11841534 atatatcatcgttgactaaataaaataaaattgacatattgaact--aggaatataaacttactcacactgaacttgctaaatccacaattctccata 11841629  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 300
Target Start/End: Original strand, 10240055 - 10240099
Alignment:
Q  256 ataaatttactcccactgagcttactaaatccacaactctccata 300  Q
    ||||| ||||||||||||| |||  ||||||||||||||||||||    
T  10240055 ataaacttactcccactgaacttgttaaatccacaactctccata 10240099  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 300
Target Start/End: Original strand, 38450910 - 38450954
Alignment:
Q  256 ataaatttactcccactgagcttactaaatccacaactctccata 300  Q
    ||||| ||||||||||||| |||  ||||||||||||||||||||    
T  38450910 ataaacttactcccactgaacttgttaaatccacaactctccata 38450954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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