View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20569_high_29 (Length: 253)
Name: NF20569_high_29
Description: NF20569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20569_high_29 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 14 - 253
Target Start/End: Complemental strand, 16891945 - 16891702
Alignment:
| Q |
14 |
agaggatgacacttagtgtttcgtatgtcttgtactaacctgcatgcttaaaaacacagttaatagacaagttattcctttatcaatagtcatattatca |
113 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
16891945 |
agaggatgacacttagtgtttcatatgtcctgtactaacctgcatgctcaaaaacacagttaattgacaaattattcctttatcaatagtcatattatca |
16891846 |
T |
|
| Q |
114 |
tcaaaatataatatagagatattgtgctttgaacctacgtcgtcctaagagtttgtacgaatcgtatgagtcttttcaaaatcccttcgtactatactat |
213 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||| |
|
|
| T |
16891845 |
tcaaaatataacatagagattttgtgctttgaacctacgtcgtcctaagagtttgtacgaatcgcatgagtcttttcaaaatccttccgtactatactat |
16891746 |
T |
|
| Q |
214 |
catttactatccataatg----tcttgctacaagagttatagac |
253 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
16891745 |
catttactatccataatgtctttcttactacaagagttatagac |
16891702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 151
Target Start/End: Original strand, 10088333 - 10088445
Alignment:
| Q |
39 |
tgtcttgtactaacctgcatgcttaaaaacacagttaatagacaagttattcctttatcaatagtcatattatcatcaaaatataatatagagatattgt |
138 |
Q |
| |
|
|||||||||||||| |||||||| | | ||| | ||| ||||||| || ||||||||| ||||||| | |||| |||||| ||||||||||||||||||| |
|
|
| T |
10088333 |
tgtcttgtactaacatgcatgctcatagacaaaattagtagacaaattgttcctttattaatagtcttgttattatcaaattataatatagagatattgt |
10088432 |
T |
|
| Q |
139 |
gctttgaacctac |
151 |
Q |
| |
|
|| |||| |||| |
|
|
| T |
10088433 |
tctatgaaactac |
10088445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 150
Target Start/End: Original strand, 22536724 - 22536786
Alignment:
| Q |
88 |
ttcctttatcaatagtcatattatcatcaaaatataatatagagatattgtgctttgaaccta |
150 |
Q |
| |
|
||||||||| | ||||| | |||| ||||||| |||||| ||||||||||| ||||||||||| |
|
|
| T |
22536724 |
ttcctttattattagtcttgttattatcaaaacataataaagagatattgttctttgaaccta |
22536786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 151
Target Start/End: Complemental strand, 5481703 - 5481591
Alignment:
| Q |
39 |
tgtcttgtactaacctgcatgcttaaaaacacagttaatagacaagttattcctttatcaatagtcatattatcatcaaaatataatatagagatattgt |
138 |
Q |
| |
|
|||||| ||| | |||||||||| | | ||||| |||||||||| ||||| |||||| | ||||| | |||||||||||| |||||||| |||||||| |
|
|
| T |
5481703 |
tgtcttataccatcctgcatgctcatagacacatttaatagacacattatttctttattattagtcttgttatcatcaaaacataatataaggatattgt |
5481604 |
T |
|
| Q |
139 |
gctttgaacctac |
151 |
Q |
| |
|
||||||||||| |
|
|
| T |
5481603 |
tttttgaacctac |
5481591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 143
Target Start/End: Complemental strand, 17562568 - 17562513
Alignment:
| Q |
88 |
ttcctttatcaatagtcatattatcatcaaaatataatatagagatattgtgcttt |
143 |
Q |
| |
|
||||||||| ||||||| | |||||||||||| |||||||| ||||||||| |||| |
|
|
| T |
17562568 |
ttcctttattaatagtcttgttatcatcaaaacataatatatagatattgttcttt |
17562513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 118
Target Start/End: Complemental strand, 21841704 - 21841627
Alignment:
| Q |
41 |
tcttgtactaacctgcatgcttaaaaacacagttaatagacaagttattcctttatcaatagtcatattatcatcaaa |
118 |
Q |
| |
|
||||||||||||||||||| | | || || ||||| |||| || |||||| ||||| ||||||||| |||||||||| |
|
|
| T |
21841704 |
tcttgtactaacctgcatgatcataagcatagttagtagaaaaattattcatttattaatagtcatgatatcatcaaa |
21841627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University