View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20569_high_34 (Length: 248)

Name: NF20569_high_34
Description: NF20569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20569_high_34
NF20569_high_34
[»] chr8 (39 HSPs)
chr8 (2-235)||(44865557-44865790)
chr8 (35-197)||(4558681-4558842)
chr8 (85-193)||(34563137-34563244)
chr8 (35-148)||(29973013-29973125)
chr8 (99-198)||(43907888-43907987)
chr8 (99-197)||(14482085-14482183)
chr8 (34-156)||(28769364-28769485)
chr8 (99-203)||(29699131-29699235)
chr8 (34-136)||(31705028-31705130)
chr8 (108-197)||(27320199-27320288)
chr8 (77-193)||(3645884-3645999)
chr8 (121-197)||(8536159-8536235)
chr8 (57-197)||(35869720-35869859)
chr8 (104-149)||(10114421-10114466)
chr8 (124-197)||(12972739-12972812)
chr8 (34-79)||(30277270-30277315)
chr8 (104-149)||(43718024-43718069)
chr8 (34-86)||(8062322-8062374)
chr8 (40-148)||(34770824-34770931)
chr8 (105-197)||(41336740-41336832)
chr8 (121-197)||(43208244-43208320)
chr8 (57-136)||(1470904-1470982)
chr8 (35-150)||(11188181-11188295)
chr8 (107-198)||(12496560-12496651)
chr8 (34-137)||(31862436-31862538)
chr8 (79-118)||(41871957-41871996)
chr8 (74-197)||(42508628-42508750)
chr8 (99-197)||(2364562-2364660)
chr8 (106-196)||(5226486-5226576)
chr8 (34-92)||(8062511-8062569)
chr8 (104-198)||(10727079-10727173)
chr8 (34-92)||(11795079-11795137)
chr8 (57-135)||(33209268-33209345)
chr8 (35-93)||(39268530-39268588)
chr8 (34-87)||(6509328-6509381)
chr8 (121-158)||(8629031-8629068)
chr8 (34-131)||(27728046-27728142)
chr8 (75-156)||(34788493-34788573)
chr8 (145-193)||(6950223-6950271)
[»] scaffold0590 (1 HSPs)
scaffold0590 (75-195)||(1140-1259)
[»] scaffold0275 (1 HSPs)
scaffold0275 (75-195)||(2716-2835)
[»] chr3 (29 HSPs)
chr3 (34-194)||(38462167-38462326)
chr3 (74-197)||(43116493-43116615)
chr3 (105-193)||(21862271-21862359)
chr3 (6-139)||(24887279-24887412)
chr3 (30-136)||(36646403-36646508)
chr3 (34-158)||(40122778-40122900)
chr3 (30-197)||(54775011-54775176)
chr3 (38-197)||(23785136-23785296)
chr3 (77-150)||(49586984-49587055)
chr3 (79-159)||(27792793-27792872)
chr3 (37-148)||(20192634-20192744)
chr3 (57-170)||(20502116-20502236)
chr3 (81-147)||(53736185-53736250)
chr3 (25-65)||(39311695-39311735)
chr3 (77-136)||(1395615-1395673)
chr3 (104-171)||(16790182-16790249)
chr3 (125-196)||(44240047-44240118)
chr3 (36-90)||(11253491-11253544)
chr3 (34-92)||(14548746-14548804)
chr3 (51-129)||(33307494-33307571)
chr3 (163-197)||(37308218-37308252)
chr3 (99-197)||(47584357-47584455)
chr3 (163-197)||(50399508-50399542)
chr3 (106-193)||(22723949-22724038)
chr3 (99-156)||(41028940-41028997)
chr3 (99-155)||(905059-905115)
chr3 (56-136)||(24235730-24235809)
chr3 (48-92)||(42753593-42753637)
chr3 (104-136)||(44061117-44061149)
[»] chr1 (25 HSPs)
chr1 (61-197)||(7200894-7201029)
chr1 (34-136)||(48830101-48830202)
chr1 (34-93)||(15361699-15361758)
chr1 (34-113)||(44422666-44422744)
chr1 (34-198)||(17269133-17269295)
chr1 (57-197)||(17420086-17420225)
chr1 (121-197)||(35350504-35350580)
chr1 (75-195)||(44936656-44936775)
chr1 (122-197)||(14128583-14128658)
chr1 (48-91)||(41638508-41638551)
chr1 (106-156)||(6659627-6659677)
chr1 (107-157)||(23370395-23370445)
chr1 (104-134)||(47480931-47480961)
chr1 (139-197)||(49365917-49365975)
chr1 (58-136)||(49517014-49517091)
chr1 (164-197)||(16322725-16322758)
chr1 (99-156)||(23373379-23373436)
chr1 (22-91)||(33976674-33976743)
chr1 (34-79)||(51929800-51929845)
chr1 (121-194)||(52013783-52013856)
chr1 (34-90)||(3224412-3224468)
chr1 (57-129)||(9656601-9656672)
chr1 (153-197)||(21516256-21516300)
chr1 (34-118)||(27738205-27738288)
chr1 (75-155)||(45107548-45107626)
[»] chr7 (28 HSPs)
chr7 (58-189)||(47003978-47004108)
chr7 (35-197)||(27481320-27481481)
chr7 (57-157)||(27548186-27548285)
chr7 (104-183)||(8445183-8445262)
chr7 (59-148)||(31002693-31002781)
chr7 (99-197)||(30133934-30134030)
chr7 (107-197)||(22388001-22388091)
chr7 (79-197)||(33894507-33894622)
chr7 (34-92)||(38010701-38010759)
chr7 (57-131)||(40689034-40689107)
chr7 (34-130)||(2999141-2999237)
chr7 (78-197)||(7100687-7100804)
chr7 (99-197)||(753293-753391)
chr7 (56-158)||(991992-992093)
chr7 (107-157)||(7244625-7244675)
chr7 (34-148)||(28165023-28165136)
chr7 (43-89)||(28340878-28340924)
chr7 (99-197)||(31341077-31341175)
chr7 (99-145)||(45813269-45813315)
chr7 (8-149)||(12234886-12235026)
chr7 (35-92)||(22759173-22759230)
chr7 (35-148)||(27378854-27378965)
chr7 (40-197)||(28340427-28340583)
chr7 (168-197)||(29769052-29769081)
chr7 (34-91)||(39505944-39506001)
chr7 (56-136)||(3802186-3802265)
chr7 (40-136)||(5006540-5006635)
chr7 (161-197)||(43021066-43021102)
[»] chr5 (35 HSPs)
chr5 (99-197)||(20982224-20982322)
chr5 (104-197)||(26516181-26516274)
chr5 (35-136)||(16889679-16889779)
chr5 (74-194)||(35135727-35135846)
chr5 (60-196)||(37063125-37063260)
chr5 (48-138)||(14295448-14295537)
chr5 (60-197)||(39257438-39257573)
chr5 (34-197)||(28586791-28586953)
chr5 (34-150)||(29588810-29588924)
chr5 (61-149)||(9202800-9202887)
chr5 (104-156)||(10391277-10391329)
chr5 (105-197)||(16945076-16945170)
chr5 (30-136)||(26516344-26516449)
chr5 (163-198)||(30585329-30585364)
chr5 (61-156)||(36539670-36539764)
chr5 (34-89)||(36542307-36542362)
chr5 (43-93)||(3951601-3951651)
chr5 (163-197)||(4855596-4855630)
chr5 (85-147)||(7096203-7096264)
chr5 (121-171)||(13244592-13244642)
chr5 (34-92)||(26390815-26390873)
chr5 (123-197)||(27104527-27104601)
chr5 (143-197)||(28981889-28981943)
chr5 (99-197)||(29115302-29115400)
chr5 (22-92)||(36638734-36638804)
chr5 (34-92)||(37588385-37588443)
chr5 (140-193)||(23999043-23999096)
chr5 (99-136)||(40097153-40097190)
chr5 (104-136)||(4014518-4014550)
chr5 (45-89)||(10391331-10391375)
chr5 (104-136)||(12595545-12595577)
chr5 (104-156)||(13224353-13224405)
chr5 (35-90)||(15003540-15003595)
chr5 (34-190)||(34690764-34690918)
chr5 (40-136)||(38047886-38047981)
[»] chr2 (37 HSPs)
chr2 (34-196)||(10198505-10198664)
chr2 (57-156)||(17952749-17952847)
chr2 (99-197)||(33197328-33197426)
chr2 (40-197)||(10143055-10143211)
chr2 (62-197)||(3102576-3102710)
chr2 (8-197)||(1939329-1939517)
chr2 (99-193)||(31461325-31461419)
chr2 (104-197)||(11393460-11393553)
chr2 (104-197)||(11410121-11410214)
chr2 (38-149)||(25609727-25609837)
chr2 (37-136)||(35099627-35099726)
chr2 (35-93)||(13736319-13736377)
chr2 (34-92)||(22681210-22681268)
chr2 (34-183)||(42817401-42817549)
chr2 (40-192)||(28803537-28803688)
chr2 (57-144)||(15377701-15377787)
chr2 (57-92)||(16353848-16353883)
chr2 (35-158)||(18962064-18962186)
chr2 (74-133)||(31740024-31740082)
chr2 (166-197)||(32757625-32757656)
chr2 (163-197)||(5752753-5752787)
chr2 (34-115)||(7103507-7103588)
chr2 (30-156)||(9478223-9478348)
chr2 (36-146)||(12215741-12215850)
chr2 (34-136)||(32694156-32694257)
chr2 (30-88)||(43141862-43141920)
chr2 (104-149)||(4026748-4026793)
chr2 (36-93)||(7862739-7862796)
chr2 (44-85)||(33502703-33502744)
chr2 (104-149)||(42420388-42420433)
chr2 (34-118)||(6993749-6993832)
chr2 (104-172)||(11393749-11393817)
chr2 (104-172)||(11410410-11410478)
chr2 (57-93)||(18179288-18179324)
chr2 (104-136)||(26143735-26143767)
chr2 (25-93)||(29419847-29419915)
chr2 (42-118)||(37292380-37292455)
[»] chr6 (25 HSPs)
chr6 (104-196)||(32917107-32917202)
chr6 (30-197)||(5328857-5329022)
chr6 (34-136)||(281873-281974)
chr6 (121-195)||(4003711-4003785)
chr6 (74-191)||(10452425-10452541)
chr6 (8-197)||(3155059-3155248)
chr6 (29-93)||(24838763-24838827)
chr6 (34-137)||(2117346-2117448)
chr6 (72-195)||(9833160-9833282)
chr6 (61-136)||(29274281-29274355)
chr6 (34-93)||(30522465-30522524)
chr6 (57-134)||(1402942-1403018)
chr6 (72-197)||(33068624-33068748)
chr6 (58-134)||(2027455-2027530)
chr6 (163-198)||(4247237-4247272)
chr6 (61-156)||(22742290-22742384)
chr6 (34-92)||(1275136-1275194)
chr6 (74-172)||(2514610-2514707)
chr6 (167-197)||(4046209-4046239)
chr6 (104-149)||(264302-264347)
chr6 (37-197)||(14492185-14492344)
chr6 (34-91)||(25426158-25426215)
chr6 (40-84)||(3525143-3525187)
chr6 (43-119)||(3785734-3785809)
chr6 (124-172)||(32386213-32386261)
[»] chr4 (37 HSPs)
chr4 (26-197)||(8422856-8423024)
chr4 (35-156)||(54325063-54325183)
chr4 (31-117)||(30581699-30581784)
chr4 (34-184)||(49219035-49219184)
chr4 (57-197)||(24443921-24444060)
chr4 (34-130)||(24929443-24929538)
chr4 (82-189)||(36734784-36734890)
chr4 (105-195)||(40709475-40709565)
chr4 (34-86)||(7694035-7694087)
chr4 (34-90)||(32066436-32066491)
chr4 (107-158)||(4191661-4191712)
chr4 (49-156)||(44319874-44319979)
chr4 (56-130)||(4071832-4071905)
chr4 (34-136)||(19040140-19040241)
chr4 (77-155)||(21193923-21194001)
chr4 (75-148)||(21593078-21593149)
chr4 (34-92)||(30207596-30207654)
chr4 (34-92)||(36048520-36048578)
chr4 (57-199)||(43372017-43372158)
chr4 (77-190)||(55437354-55437464)
chr4 (104-197)||(485964-486057)
chr4 (61-150)||(8130104-8130192)
chr4 (125-197)||(14987071-14987141)
chr4 (139-196)||(18512548-18512605)
chr4 (108-149)||(21731751-21731792)
chr4 (99-196)||(22684605-22684702)
chr4 (59-156)||(24160545-24160641)
chr4 (75-136)||(29373953-29374013)
chr4 (75-192)||(30024588-30024704)
chr4 (41-118)||(49085951-49086027)
chr4 (104-136)||(3155547-3155579)
chr4 (165-197)||(4663857-4663889)
chr4 (104-148)||(4798653-4798697)
chr4 (34-66)||(19394788-19394820)
chr4 (34-145)||(30338616-30338727)
chr4 (106-150)||(47970248-47970292)
chr4 (97-157)||(51555954-51556014)
[»] scaffold0024 (1 HSPs)
scaffold0024 (57-197)||(27459-27598)
[»] scaffold0060 (1 HSPs)
scaffold0060 (104-183)||(63379-63458)
[»] scaffold0153 (2 HSPs)
scaffold0153 (72-197)||(6561-6684)
scaffold0153 (72-197)||(13581-13704)
[»] scaffold0100 (1 HSPs)
scaffold0100 (105-193)||(42504-42592)
[»] scaffold0110 (2 HSPs)
scaffold0110 (32-150)||(4246-4364)
scaffold0110 (111-198)||(34013-34100)
[»] scaffold0072 (1 HSPs)
scaffold0072 (121-188)||(4864-4931)
[»] scaffold0091 (1 HSPs)
scaffold0091 (106-196)||(5903-5993)


Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 39)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 2 - 235
Target Start/End: Original strand, 44865557 - 44865790
Alignment:
Q  2 aatgatttatgacatgtatcagcttttatcatcttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctga 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44865557 aatgatttatgacatgtatcagcttttatcatcttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctga 44865656  T
Q  102 cattattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaaattga 201  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44865657 cattatttaatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaaattga 44865756  T
Q  202 acctaaatagtaaattgaattcacacatgaatag 235  Q
    ||||||||||||||||||||||||||||||||||    
T  44865757 acctaaatagtaaattgaattcacacatgaatag 44865790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 35 - 197
Target Start/End: Complemental strand, 4558842 - 4558681
Alignment:
Q  35 ttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagctta 134  Q
    |||||||||||| |||||||| |||||||||  || ||||||||||| |||||||||||  || | || ||||||||||||||   ||||||||||||||    
T  4558842 ttatttccataagctctctaggatagcttatggaaacagcttatagcatatatgaaaataatt-taactttattttatcttttattatagaaatagctta 4558744  T
Q  135 taagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaaa 197  Q
    ||  ||| |||||| |  |||||| || |||||||||||   |||||||||||||||||||||    
T  4558743 tacataaacacttacataataaacgtttatgctataagcgcgtaattaagttgtttatccaaa 4558681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 34563244 - 34563137
Alignment:
Q  85 tatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaag 184  Q
    ||||||||| ||| |||| |||||||||| ||||  ||||||||| ||||||  |||||||||||| ||||||  || ||||||||||| ||||||||||    
T  34563244 tatgaaaattgtt-tgactttattttatcctttgtcatagaaataacttatatataagcacttatatgataaatgtttatgctataagcgtttaattaag 34563146  T
Q  185 ttgtttatc 193  Q
    |||||||||    
T  34563145 ttgtttatc 34563137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 148
Target Start/End: Complemental strand, 29973125 - 29973013
Alignment:
Q  35 ttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagctta 134  Q
    |||||||||||||||||| || ||||||||| ||| || |||||||||||| ||||||| ||| |||| |||||||| ||| ||  | ||||||||||||    
T  29973125 ttatttccataaactctcaaggatagcttatgaaaacaacttatagcttatgtgaaaatagtt-tgactttattttaccttgtgttaaagaaatagctta 29973027  T
Q  135 taagtaagcactta 148  Q
    ||  ||||||||||    
T  29973026 tatataagcactta 29973013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 99 - 198
Target Start/End: Original strand, 43907888 - 43907987
Alignment:
Q  99 tgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaaat 198  Q
    |||| |||||||||||||| || |||||||| ||| || |||| |||||||| ||||||| || ||| ||||||  |||||||||| |||||||||||||    
T  43907888 tgactttattttatcttttacgctagaaataacttgtatgtaaccacttatatgataaacatttatgatataagggtttaattaagatgtttatccaaat 43907987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 197
Target Start/End: Complemental strand, 14482183 - 14482085
Alignment:
Q  99 tgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaaa 197  Q
    |||| |||||||||||||||  |||||||||| |||||  |||||||||||| ||||| |  |||||||||||| | |||||||| |||||||| ||||    
T  14482183 tgactttattttatcttttgttatagaaatagtttatacataagcacttatatgataagcactaatgctataagaacttaattaaattgtttattcaaa 14482085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 156
Target Start/End: Original strand, 28769364 - 28769485
Alignment:
Q  34 cttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagctt 133  Q
    ||||||||||||||||||| |  ||||||||| ||| |||||||||||||||| |||||| ||| |||| | |||||||  ||||  |||| ||||||||    
T  28769364 cttatttccataaactctccaaaatagcttatgaaaacagcttatagcttataagaaaatagtt-tgacttaattttatagtttgttataggaatagctt 28769462  T
Q  134 ataagtaagcacttataagataa 156  Q
    |||  |||||| ||||| |||||    
T  28769463 atacataagcatttatatgataa 28769485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 203
Target Start/End: Complemental strand, 29699235 - 29699131
Alignment:
Q  99 tgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaaat 198  Q
    |||| |||||||||||||||  ||||||||| ||| ||  |||||| ||||| ||||||  || |||||||||||| |||| ||||| ||||||||||||    
T  29699235 tgactttattttatcttttgttatagaaataacttgtacataagcatttatatgataaatatttatgctataagcacttaactaagtcgtttatccaaat 29699136  T
Q  199 tgaac 203  Q
     ||||    
T  29699135 agaac 29699131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 136
Target Start/End: Complemental strand, 31705130 - 31705028
Alignment:
Q  34 cttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagctt 133  Q
    ||||||||||||||||||| || | ||||||| ||| |||||||||||||||||||||     | |||||| ||||||||||||   | |||||||||||    
T  31705130 cttatttccataaactctcaaggacagcttatgaaaacagcttatagcttatatgaaacgtaatttgacatgattttatcttttagtacagaaatagctt 31705031  T
Q  134 ata 136  Q
    |||    
T  31705030 ata 31705028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 197
Target Start/End: Complemental strand, 27320288 - 27320199
Alignment:
Q  108 tttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaaa 197  Q
    |||||||||||| |||| ||||||||||| ||||||||||||  |||||   || |||||||||||  |||||||| |||||| ||||||    
T  27320288 tttatcttttgctataggaatagcttatacgtaagcacttatgtgataagtgtttatgctataagcgcttaattaaattgtttttccaaa 27320199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 193
Target Start/End: Original strand, 3645884 - 3645999
Alignment:
Q  77 atagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagcatt 176  Q
    ||||||||||||||||| ||| |||  || |||||| ||||   ||||||||||||||||   ||||||||||| |||||||  | ||||||||| ||||    
T  3645884 atagcttatatgaaaatagtt-tgattttgttttatattttcttatagaaatagcttatacacaagcacttatatgataaacacttatgctataaacatt 3645982  T
Q  177 taattaagttgtttatc 193  Q
    |||| ||||||| ||||    
T  3645983 taatcaagttgtctatc 3645999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 197
Target Start/End: Original strand, 8536159 - 8536235
Alignment:
Q  121 atagaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaaa 197  Q
    ||||||||||||||||  |||||||||||| || || | || ||| |||||||| | ||||||||||||||||||||    
T  8536159 atagaaatagcttatacataagcacttatatgacaagcattcatggtataagcactcaattaagttgtttatccaaa 8536235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 197
Target Start/End: Complemental strand, 35869859 - 35869720
Alignment:
Q  57 atagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataa 156  Q
    ||||||||| ||| || |||||||||||||||||||| ||| |||  ||||||||| |||||   ||||||| |||||||  |||| ||||||| |||||    
T  35869859 atagcttatgaaaacaacttatagcttatatgaaaattgtt-tgaatttattttatattttgttgtagaaatcgcttatacataagaacttatatgataa 35869761  T
Q  157 actttaatgctataagcatttaattaagttgtttatccaaa 197  Q
        | |||||||||||  ||||| ||||||| ||||||||    
T  35869760 gtgcttatgctataagcgcttaataaagttgtgtatccaaa 35869720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 149
Target Start/End: Complemental strand, 10114466 - 10114421
Alignment:
Q  104 ttattttatcttttgcgatagaaatagcttataagtaagcacttat 149  Q
    |||||||||||||||| ||||||||||||||||  |||||||||||    
T  10114466 ttattttatcttttgctatagaaatagcttatacataagcacttat 10114421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 197
Target Start/End: Complemental strand, 12972812 - 12972739
Alignment:
Q  124 gaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaaa 197  Q
    |||||||||||||  |||||||||||| ||||||   | |||||||||||  ||||||||||||||| ||||||    
T  12972812 gaaatagcttatacataagcacttatatgataaatgcttatgctataagcgcttaattaagttgtttgtccaaa 12972739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 30277270 - 30277315
Alignment:
Q  34 cttatttccataaactctctagtatagcttataaaaccagcttata 79  Q
    |||||||||||||||||||||| ||||||||| ||| |||||||||    
T  30277270 cttatttccataaactctctaggatagcttatgaaaacagcttata 30277315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 43718024 - 43718069
Alignment:
Q  104 ttattttatcttttgcgatagaaatagcttataagtaagcacttat 149  Q
    |||||||||||||||||||||||||||||||||  ||||| |||||    
T  43718024 ttattttatcttttgcgatagaaatagcttatagataagcgcttat 43718069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 8062374 - 8062322
Alignment:
Q  34 cttatttccataaactctctagtatagcttataaaaccagcttatagcttata 86  Q
    ||||||||||||| |||||||  ||||||||| ||| ||||||||||||||||    
T  8062374 cttatttccataatctctctaagatagcttatgaaaacagcttatagcttata 8062322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 148
Target Start/End: Complemental strand, 34770931 - 34770824
Alignment:
Q  40 tccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagt 139  Q
    ||||| |||||||||| ||||||||| ||| || ||||||||||| ||||||| |  | |||| |||||||||||||||  || ||||||| || ||  |    
T  34770931 tccatgaactctctaggatagcttatgaaaacaacttatagcttaaatgaaaa-caatttgactttattttatcttttgtaatggaaatagtttttacat 34770833  T
Q  140 aagcactta 148  Q
    |||||||||    
T  34770832 aagcactta 34770824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 197
Target Start/End: Original strand, 41336740 - 41336832
Alignment:
Q  105 tattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaaa 197  Q
    ||||||||||||||  ||| ||||   |||||  |||||| ||||  |||||||  | |||||||||||| ||||||||||||||||||||||    
T  41336740 tattttatcttttgtcataaaaatgatttatacataagcatttatttgataaacgcttatgctataagcaattaattaagttgtttatccaaa 41336832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 197
Target Start/End: Original strand, 43208244 - 43208320
Alignment:
Q  121 atagaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaaa 197  Q
    ||||||||||||||||  |||  ||||||| ||| ||| || || ||||||||| ||||||||||||||||| ||||    
T  43208244 atagaaatagcttatacataaatacttatatgatgaacgtttatactataagcacttaattaagttgtttatacaaa 43208320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 136
Target Start/End: Original strand, 1470904 - 1470982
Alignment:
Q  57 atagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttata 136  Q
    |||| |||| ||| ||||||||||||||||||||| |  || |||| ||||||||||||||   ||||||||||||||||    
T  1470904 ataggttatgaaaacagcttatagcttatatgaaagtaatt-tgactttattttatcttttattatagaaatagcttata 1470982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 150
Target Start/End: Original strand, 11188181 - 11188295
Alignment:
Q  35 ttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagctta 134  Q
    ||||| ||||||||||||||| ||||||||| |||  || ||||| || |||| ||||| ||| ||   |||||||||||||||  ||||||| | ||||    
T  11188181 ttattaccataaactctctaggatagcttatcaaaatagtttataactaatataaaaatagtt-tggttttattttatcttttgttatagaaacaactta 11188279  T
Q  135 taagtaagcacttata 150  Q
    ||  ||||||||||||    
T  11188280 tacataagcacttata 11188295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 198
Target Start/End: Complemental strand, 12496651 - 12496560
Alignment:
Q  107 ttttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaaat 198  Q
    ||||||||  ||| ||||||||| ||||||  || | ||||||| ||||| | |||||||||||| || ||||||||| || ||||||||||    
T  12496651 ttttatctcgtgctatagaaataacttatacatacgtacttatatgataagcgttaatgctataaacacttaattaagctggttatccaaat 12496560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 137
Target Start/End: Complemental strand, 31862538 - 31862436
Alignment:
Q  34 cttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagctt 133  Q
    ||||||| ||||| |||||||| ||| ||||| ||| || ||||||||||||| || ||| ||| |||| |||| ||||||||||  || |||||| |||    
T  31862538 cttattttcataagctctctaggataacttatgaaaacatcttatagcttatacgagaatagtt-tgactttatattatcttttgttattgaaataactt 31862440  T
Q  134 ataa 137  Q
    ||||    
T  31862439 ataa 31862436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 118
Target Start/End: Complemental strand, 41871996 - 41871957
Alignment:
Q  79 agcttatatgaaaatcgttctgacattattttatcttttg 118  Q
    ||||| |||||||||||||||||| |||||||||||||||    
T  41871996 agcttttatgaaaatcgttctgactttattttatcttttg 41871957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 197
Target Start/End: Original strand, 42508628 - 42508750
Alignment:
Q  74 cttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagc 173  Q
    |||||||||||||||||||||  || ||| ||||||||| ||||   |||||||||||  |||  ||| | |||||| ||||||  || ||| || ||||    
T  42508628 cttatagcttatatgaaaatcaatc-gactttattttatattttattatagaaatagccaatacataaacccttatatgataaatgtttatgttagaagc 42508726  T
Q  174 atttaattaagttgtttatccaaa 197  Q
    | |||||||||||||||| |||||    
T  42508727 acttaattaagttgtttacccaaa 42508750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 197
Target Start/End: Original strand, 2364562 - 2364660
Alignment:
Q  99 tgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaaa 197  Q
    |||| |||||||||||||||| ||| ||||||| ||||  |||  | ||||| |||||||  | |||||||||||  |||| || ||||||||||||||    
T  2364562 tgactttattttatcttttgctataaaaatagcgtatacataaatagttatatgataaacacttatgctataagcgcttaactatgttgtttatccaaa 2364660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 196
Target Start/End: Complemental strand, 5226576 - 5226486
Alignment:
Q  106 attttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaa 196  Q
    |||||||||||||  || ||||| | |||||  ||| |||||||| ||||||  || ||||||||| || || ||||||||||||||||||    
T  5226576 attttatcttttgttattgaaattgtttatacataaacacttatatgataaatgtttatgctataaacagttgattaagttgtttatccaa 5226486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 92
Target Start/End: Complemental strand, 8062569 - 8062511
Alignment:
Q  34 cttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaa 92  Q
    ||||||| |||||||||||||  ||||||||| | | || |||||||||||||||||||    
T  8062569 cttattttcataaactctctaagatagcttatgagaacatcttatagcttatatgaaaa 8062511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 198
Target Start/End: Complemental strand, 10727173 - 10727079
Alignment:
Q  104 ttattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaaat 198  Q
    |||||| ||||||||| |||||||||||||||   |||||||||||| ||| |||  | |||||||||    |||||||||||| || |||||||    
T  10727173 ttatttcatcttttgctatagaaatagcttatgcataagcacttatatgatgaacacttatgctataaatgcttaattaagttggttgtccaaat 10727079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 92
Target Start/End: Complemental strand, 11795137 - 11795079
Alignment:
Q  34 cttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaa 92  Q
    ||||||||||||| ||||| |  ||||||||| ||| ||||||||| ||||||||||||    
T  11795137 cttatttccataagctctccataatagcttatgaaatcagcttataacttatatgaaaa 11795079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 33209268 - 33209345
Alignment:
Q  57 atagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttat 135  Q
    |||||||||||||  ||||||||| |||||||||||  |||| ||| |||||||||||||    |||||||||||||||    
T  33209268 atagcttataaaaatagcttatagtttatatgaaaacagttc-gactttattttatctttcattatagaaatagcttat 33209345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 93
Target Start/End: Original strand, 39268530 - 39268588
Alignment:
Q  35 ttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaat 93  Q
    |||||||||||| |||||||| | ||||||| ||| |||||| || |||||||||||||    
T  39268530 ttatttccataagctctctagaaaagcttatgaaaacagcttttaacttatatgaaaat 39268588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 6509328 - 6509381
Alignment:
Q  34 cttatttccataaactctctagtatagcttataaaaccagcttatagcttatat 87  Q
    |||||||| |||| ||||| || ||||||||| ||| |||||||||||||||||    
T  6509328 cttatttcaataagctctccaggatagcttatgaaaacagcttatagcttatat 6509381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 158
Target Start/End: Complemental strand, 8629068 - 8629031
Alignment:
Q  121 atagaaatagcttataagtaagcacttataagataaac 158  Q
    ||||||||||||||||| |||||||||||| |||||||    
T  8629068 atagaaatagcttataaataagcacttatatgataaac 8629031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 131
Target Start/End: Original strand, 27728046 - 27728142
Alignment:
Q  34 cttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagc 131  Q
    ||||||||||| | | |||||| ||||||||| ||| || || |||  |||||||||||| ||| |||| ||||||||||||||   |||||||||||    
T  27728046 cttatttccatcatccctctaggatagcttatgaaaacaactaatactttatatgaaaatagtt-tgactttattttatctttttttatagaaatagc 27728142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 156
Target Start/End: Original strand, 34788493 - 34788573
Alignment:
Q  75 ttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataa 156  Q
    |||||||||||||| |||  ||| |||| ||||||||||||| |  ||| |||||||||||| ||||||| ||||| |||||    
T  34788493 ttatagcttatatggaaacagtt-tgactttattttatctttggtcataaaaatagcttatacgtaagcatttatatgataa 34788573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 6950271 - 6950223
Alignment:
Q  145 cttataagataaactttaatgctataagcatttaattaagttgtttatc 193  Q
    |||||| ||||| | || |||||||||||| ||||||||||||||||||    
T  6950271 cttatatgataagcgtttatgctataagcacttaattaagttgtttatc 6950223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 75 - 195
Target Start/End: Original strand, 1140 - 1259
Alignment:
Q  75 ttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagca 174  Q
    |||| |||||||||| ||| ||| |||| |||||||||||||||  ||||||||||||||||  |||||||||||| |||| || || |||||||||| |    
T  1140 ttatggcttatatgagaatagtt-tgactttattttatcttttgttatagaaatagcttatacataagcacttatatgatagacgtttatgctataagta 1238  T
Q  175 tttaattaagttgtttatcca 195  Q
     ||||||||||||||||||||    
T  1239 cttaattaagttgtttatcca 1259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 75 - 195
Target Start/End: Complemental strand, 2835 - 2716
Alignment:
Q  75 ttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagca 174  Q
    |||| |||||||||| ||| ||| |||| |||||||||||||||  ||||||||||||||||  |||||||||||| |||| || || |||||||||| |    
T  2835 ttatggcttatatgagaatagtt-tgactttattttatcttttgttatagaaatagcttatacataagcacttatatgatagacgtttatgctataagta 2737  T
Q  175 tttaattaagttgtttatcca 195  Q
     ||||||||||||||||||||    
T  2736 cttaattaagttgtttatcca 2716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 34 - 194
Target Start/End: Complemental strand, 38462326 - 38462167
Alignment:
Q  34 cttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagctt 133  Q
    ||||||||||||| || ||| | ||||||||| ||| ||| ||||||| ||||||||||  ||| |||| |||||||||||||||  |||||||||||||    
T  38462326 cttatttccataagctatcttggatagcttatgaaaacagtttatagcatatatgaaaacagtt-tgactttattttatcttttggtatagaaatagctt 38462228  T
Q  134 ataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatcc 194  Q
    |||| ||| |||||||| |||||   || ||||| || ||  |||||||| ||||||||||    
T  38462227 ataaataaacacttatatgataagtgtttatgctttaggcgcttaattaacttgtttatcc 38462167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 74 - 197
Target Start/End: Original strand, 43116493 - 43116615
Alignment:
Q  74 cttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagc 173  Q
    |||||||||||||||||||| ||| |||  | |||||||||||||  |||||||||||||| |  ||| ||||| || ||||||| || ||||||||| |    
T  43116493 cttatagcttatatgaaaattgtt-tgatttgattttatcttttgttatagaaatagcttacacataaacacttgtatgataaacatttatgctataaac 43116591  T
Q  174 atttaattaagttgtttatccaaa 197  Q
    | | ||||||||||||||||||||    
T  43116592 actaaattaagttgtttatccaaa 43116615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 105 - 193
Target Start/End: Original strand, 21862271 - 21862359
Alignment:
Q  105 tattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatc 193  Q
    ||||||||||||||  ||||||| |||||||| | ||||||||||||||||||| || ||||||||||   |||||| |||||||||||    
T  21862271 tattttatcttttgtaatagaaacagcttatacgcaagcacttataagataaacgtttatgctataagtgcttaattgagttgtttatc 21862359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 139
Target Start/End: Original strand, 24887279 - 24887412
Alignment:
Q  6 atttatgacatgt-atcagcttttatcatcttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacat 104  Q
    ||||||||||||| || | || || ||| |||||| |||||| ||||| || ||||||||| ||| |||||| ||||||||||||| |  ||| |||| |    
T  24887279 atttatgacatgtcattaactgttttcagcttattcccataagctctccaggatagcttatgaaaacagcttttagcttatatgaatacagtt-tgactt 24887377  T
Q  105 tattttatcttttgcgatagaaatagcttataagt 139  Q
    |||||||||| |||  |||||||||||||||||||    
T  24887378 tattttatctattgttatagaaatagcttataagt 24887412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 136
Target Start/End: Original strand, 36646403 - 36646508
Alignment:
Q  30 tcatcttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaata 129  Q
    |||||||||||| ||||||||||||| ||||||||| ||| ||  ||||| ||||||||||||   || | || |||||||||||||||  |||||||||    
T  36646403 tcatcttatttctataaactctctaggatagcttatgaaaacaagttataacttatatgaaaacaattat-actttattttatcttttgtcatagaaata 36646501  T
Q  130 gcttata 136  Q
    |||||||    
T  36646502 gcttata 36646508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 158
Target Start/End: Original strand, 40122778 - 40122900
Alignment:
Q  34 cttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagctt 133  Q
    ||||||||||| |||| | ||| ||||||||||||| || |||||||||| ||||||||  ||| |||| |||||||||||||||  || ||||||||||    
T  40122778 cttatttccattaactttttaggatagcttataaaaacaacttatagctt-tatgaaaacagtt-tgactttattttatcttttgttattgaaatagctt 40122875  T
Q  134 ataagtaagcacttataagataaac 158  Q
    |||  |||| ||| ||| |||||||    
T  40122876 atacataagtactgatacgataaac 40122900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 197
Target Start/End: Complemental strand, 54775176 - 54775011
Alignment:
Q  30 tcatcttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaata 129  Q
    ||||||||||| ||||||||||| |  ||| ||||  ||| |||||||||  |||||| ||||| ||| |||| |||||||||||||||  |||||||||    
T  54775176 tcatcttattttcataaactctccatgataacttacgaaaacagcttataa-ttatataaaaatggtt-tgactttattttatcttttgttatagaaata 54775079  T
Q  130 gcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaaa 197  Q
     |||| | |||||||||| || ||||| | || |||||||| |   ||||||||| ||||||| ||||    
T  54775078 acttaaacgtaagcacttttatgataatcatttatgctatatgtggttaattaagctgtttattcaaa 54775011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 197
Target Start/End: Complemental strand, 23785296 - 23785136
Alignment:
Q  38 tttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataa 137  Q
    ||||||||| ||||| |  | ||||| | ||| ||| |||||||||||||||| |  ||| |||| |||||||||||| |||  |||||||| |||||      
T  23785296 tttccataagctctccatgagagcttgtgaaaacagtttatagcttatatgaatacagtt-tgactttattttatcttctgctgtagaaataacttatgc 23785198  T
Q  138 gtaagcac--ttataagataaactttaatgctataagcatttaattaagttgtttatccaaa 197  Q
     ||||||   ||||| ||||||| || |||||||||||| ||||||||||||||||| ||||    
T  23785197 ataagcatatttatatgataaacatttatgctataagcacttaattaagttgtttatgcaaa 23785136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 49586984 - 49587055
Alignment:
Q  77 atagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcacttata 150  Q
    ||||||||||||||||  ||| |||| |||||||||||||||  ||||||||||||||| ||||||||||||||    
T  49586984 atagcttatatgaaaacagtt-tgactttattttatcttttgttatagaaatagcttat-agtaagcacttata 49587055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 159
Target Start/End: Complemental strand, 27792872 - 27792793
Alignment:
Q  79 agcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataaact 159  Q
    ||||||||||||||| ||| |||| |||||||||||||||   | |||||||||||||  |||||||||||| ||||||||    
T  27792872 agcttatatgaaaatagtt-tgaccttattttatcttttgtttttgaaatagcttatacataagcacttatatgataaact 27792793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 148
Target Start/End: Original strand, 20192634 - 20192744
Alignment:
Q  37 atttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttata 136  Q
    |||||||||| |||||  | |||  ||| |||| |||||||||| |||||||||||  ||| |||| |||||||||||||||  ||| ||||||||||||    
T  20192634 atttccataagctctcccgaataagttacaaaaacagcttatagattatatgaaaactgtt-tgactttattttatcttttgttatataaatagcttata 20192732  T
Q  137 agtaagcactta 148  Q
      ||||||||||    
T  20192733 cataagcactta 20192744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 170
Target Start/End: Original strand, 20502116 - 20502236
Alignment:
Q  57 atagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatctttt-------gcgatagaaatagcttataagtaagcacttat 149  Q
    ||||||||| ||| ||||||||||| ||||||||||  ||| |||| |||||| |||||||       |  ||||||||||||||||  |||||||||||    
T  20502116 atagcttatgaaaacagcttatagcgtatatgaaaacagttttgactttatttgatctttttgtcatagaaatagaaatagcttatatataagcacttat 20502215  T
Q  150 aagataaactttaatgctata 170  Q
    | ||||| | |||||||||||    
T  20502216 atgataagcattaatgctata 20502236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 81 - 147
Target Start/End: Original strand, 53736185 - 53736250
Alignment:
Q  81 cttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcactt 147  Q
    ||||||||||||| ||| ||||||||||||||||||||  ||||||||| || ||| ||||||||||    
T  53736185 cttatatgaaaatagtt-tgacattattttatcttttgttatagaaataactcatacgtaagcactt 53736250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 39311695 - 39311735
Alignment:
Q  25 ttttatcatcttatttccataaactctctagtatagcttat 65  Q
    |||| ||||||||||||||||||||||| ||||||||||||    
T  39311695 ttttttcatcttatttccataaactctccagtatagcttat 39311735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 136
Target Start/End: Complemental strand, 1395673 - 1395615
Alignment:
Q  77 atagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttata 136  Q
    |||||||||||||||||  || |||| |||||||||||||||  ||||||||||||||||    
T  1395673 atagcttatatgaaaataatt-tgactttattttatcttttgttatagaaatagcttata 1395615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 16790182 - 16790249
Alignment:
Q  104 ttattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataa 171  Q
    |||||||||||||||  ||||||||| ||||||  |||||||||||| |||||||  | |||||||||    
T  16790182 ttattttatcttttgttatagaaataacttatatataagcacttatatgataaacgcttatgctataa 16790249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 196
Target Start/End: Complemental strand, 44240118 - 44240047
Alignment:
Q  125 aaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaa 196  Q
    |||||||||| |  |||||||||||| ||||||   | |||||||||||| ||| |||||||||||||||||    
T  44240118 aaatagcttaaagataagcacttatatgataaatgattatgctataagcacttacttaagttgtttatccaa 44240047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 11253544 - 11253491
Alignment:
Q  36 tatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaa 90  Q
    ||||||| ||| |||||||| ||||||||| |||| |||||||||||||||||||    
T  11253544 tatttccctaagctctctaggatagcttatgaaac-agcttatagcttatatgaa 11253491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 14548746 - 14548804
Alignment:
Q  34 cttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaa 92  Q
    ||||||||||||| ||||| || ||| ||||| ||| || |||||||||||||||||||    
T  14548746 cttatttccataagctctccagaataacttatgaaaacaacttatagcttatatgaaaa 14548804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 129
Target Start/End: Original strand, 33307494 - 33307571
Alignment:
Q  51 tctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaata 129  Q
    ||||||||||||||| ||| || |||||| ||||||| ||||| ||| || |||| |||||||||||||  ||||||||    
T  33307494 tctagtatagcttatgaaaacatcttataacttatataaaaatagtt-tggcattgttttatcttttgctctagaaata 33307571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 197
Target Start/End: Original strand, 37308218 - 37308252
Alignment:
Q  163 atgctataagcatttaattaagttgtttatccaaa 197  Q
    |||||||||||| ||||||||||||||||||||||    
T  37308218 atgctataagcacttaattaagttgtttatccaaa 37308252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 197
Target Start/End: Complemental strand, 47584455 - 47584357
Alignment:
Q  99 tgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaaa 197  Q
    |||| |||||||| ||||||  |||||||||||||| |  |||   |||||| ||||||  |||||||||||||| ||| |||||| ||||| ||||||    
T  47584455 tgactttattttaccttttgtcatagaaatagcttacacataaaaccttatatgataaaagttaatgctataagcgttttattaagctgtttttccaaa 47584357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 197
Target Start/End: Original strand, 50399508 - 50399542
Alignment:
Q  163 atgctataagcatttaattaagttgtttatccaaa 197  Q
    |||||||||||| ||||||||||||||||||||||    
T  50399508 atgctataagcaattaattaagttgtttatccaaa 50399542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 193
Target Start/End: Complemental strand, 22724038 - 22723949
Alignment:
Q  106 attttatcttttgcgatagaaatagcttataagtaagcacttataa-gataaact-ttaatgctataagcatttaattaagttgtttatc 193  Q
    |||||||||||||  |||||| ||||||| |  ||||||||||||  |||||| | || |||||||||||  ||||||||||||||||||    
T  22724038 attttatcttttgttatagaagtagcttaaacataagcacttatactgataaaatctttatgctataagcgcttaattaagttgtttatc 22723949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 156
Target Start/End: Original strand, 41028940 - 41028997
Alignment:
Q  99 tgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataa 156  Q
    |||| ||||||| |||||||  ||||||||||||||||  |||||||||||| |||||    
T  41028940 tgactttattttttcttttgttatagaaatagcttatacataagcacttatatgataa 41028997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 905059 - 905115
Alignment:
Q  99 tgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagata 155  Q
    |||| |||||||||||||||  ||||||||||||||||  ||||| |||||| ||||    
T  905059 tgactttattttatcttttgttatagaaatagcttatacttaagcgcttatatgata 905115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 136
Target Start/End: Original strand, 24235730 - 24235809
Alignment:
Q  56 tatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttata 136  Q
    |||||||||| ||| || ||||||||||||||  |||| ||| |||| |||| ||||||||||  ||||||||| ||||||    
T  24235730 tatagcttatgaaaacaacttatagcttatattcaaatagtt-tgactttatattatcttttgttatagaaataacttata 24235809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 42753637 - 42753593
Alignment:
Q  48 ctctctagtatagcttataaaaccagcttatagcttatatgaaaa 92  Q
    |||||||| ||||||| ||||| || |||||||||||||||||||    
T  42753637 ctctctaggatagcttgtaaaaacaacttatagcttatatgaaaa 42753593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 136
Target Start/End: Original strand, 44061117 - 44061149
Alignment:
Q  104 ttattttatcttttgcgatagaaatagcttata 136  Q
    |||||||||||||||| ||||||||||||||||    
T  44061117 ttattttatcttttgctatagaaatagcttata 44061149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 61 - 197
Target Start/End: Original strand, 7200894 - 7201029
Alignment:
Q  61 cttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactt 160  Q
    |||||||||  || |||| |||||||||| ||||||| |||| ||||||||||||||   || |||||||||||||||||| |||||| | ||||| |      
T  7200894 cttataaaaatagtttatggcttatatgataatcgtt-tgactttattttatcttttattatggaaatagcttataagtaaacacttacatgataagcga 7200992  T
Q  161 taatgctataagcatttaattaagttgtttatccaaa 197  Q
    | | | ||||| |||||||||||||||||||||||||    
T  7200993 ttaagttataatcatttaattaagttgtttatccaaa 7201029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 136
Target Start/End: Original strand, 48830101 - 48830202
Alignment:
Q  34 cttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagctt 133  Q
    |||||||| || | |||| ||| ||||||||| ||| ||| ||||||||||||||||||| ||| |||| ||||||||||||| |  ||||||||| |||    
T  48830101 cttatttctattagctctttagaatagcttatgaaaacagtttatagcttatatgaaaatagtt-tgactttattttatctttggtaatagaaataactt 48830199  T
Q  134 ata 136  Q
    |||    
T  48830200 ata 48830202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 93
Target Start/End: Complemental strand, 15361758 - 15361699
Alignment:
Q  34 cttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaat 93  Q
    |||| |||||||||||||| || ||| ||||| ||| |||||||||||||||||||||||    
T  15361758 cttaattccataaactctcaagaatatcttatgaaaacagcttatagcttatatgaaaat 15361699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 113
Target Start/End: Complemental strand, 44422744 - 44422666
Alignment:
Q  34 cttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatc 113  Q
    ||||||| ||||| ||||| || |||||||||||||  |||||||||||||||||||||  ||| ||| |||||||||||    
T  44422744 cttattttcataagctctccaggatagcttataaaaatagcttatagcttatatgaaaacagtt-tgagattattttatc 44422666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 198
Target Start/End: Complemental strand, 17269295 - 17269133
Alignment:
Q  34 cttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagctt 133  Q
    |||||| || ||| ||||| || ||||||||| ||| || ||||| ||||||||||||| |  | |||| |||||||  ||||||   |||||||| |||    
T  17269295 cttattaccgtaagctctccaggatagcttatgaaaacaacttattgcttatatgaaaa-caatttgactttattttcacttttgttctagaaataactt 17269197  T
Q  134 ataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaaat 198  Q
    |||  |||||||||||| || |||| || ||| ||| || ||||||| |||||| ||||||||||    
T  17269196 atacataagcacttatatga-aaacgtttatgatatcagtatttaatcaagttgcttatccaaat 17269133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 197
Target Start/End: Complemental strand, 17420225 - 17420086
Alignment:
Q  57 atagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataa 156  Q
    ||||||||  ||| ||| ||||||||||||||||||| |||| ||| ||||||||||||||   ||| |||||| |||||  |||| ||||||  | |||    
T  17420225 atagcttacgaaaacagtttatagcttatatgaaaattgttc-gactttattttatcttttcttataaaaatagtttatacataagtacttatgtgctaa 17420127  T
Q  157 actttaatgctataagcatttaattaagttgtttatccaaa 197  Q
     |  | || |||||| || ||||||||| ||||||||||||    
T  17420126 gcgcttatactataatcacttaattaagctgtttatccaaa 17420086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 197
Target Start/End: Complemental strand, 35350580 - 35350504
Alignment:
Q  121 atagaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaaa 197  Q
    ||||||||||||||||| |||| |||| || ||||||  ||  ||||||| || |||||||| ||||||||||||||    
T  35350580 atagaaatagcttataaataagaacttgtatgataaatgtttgtgctatatgcgtttaattatgttgtttatccaaa 35350504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 195
Target Start/End: Original strand, 44936656 - 44936775
Alignment:
Q  75 ttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagca 174  Q
    ||||||||||||||||||| ||| |||| |||| ||||||||||  ||||||||| ||| ||  |||| | || |  ||| | |  | || |||||||||    
T  44936656 ttatagcttatatgaaaatagtt-tgactttatcttatcttttgttatagaaataacttctacttaagtaattttttgatgagcgcttatactataagca 44936754  T
Q  175 tttaattaagttgtttatcca 195  Q
    |||||||||||||||||||||    
T  44936755 tttaattaagttgtttatcca 44936775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 197
Target Start/End: Original strand, 14128583 - 14128658
Alignment:
Q  122 tagaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaaa 197  Q
    |||||||| |||| |  |||||||||||| |||||   || || ||||||||||||| ||||||||||||||||||    
T  14128583 tagaaataacttacatataagcacttatatgataagtctttatactataagcatttatttaagttgtttatccaaa 14128658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 91
Target Start/End: Complemental strand, 41638551 - 41638508
Alignment:
Q  48 ctctctagtatagcttataaaaccagcttatagcttatatgaaa 91  Q
    |||||||||||||||||| ||| ||||| |||||||||||||||    
T  41638551 ctctctagtatagcttatgaaaacagctaatagcttatatgaaa 41638508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 156
Target Start/End: Complemental strand, 6659677 - 6659627
Alignment:
Q  106 attttatcttttgcgatagaaatagcttataagtaagcacttataagataa 156  Q
    |||||||||||||| |||||||||| |||||  |||||||||||| |||||    
T  6659677 attttatcttttgctatagaaatagtttatacataagcacttatatgataa 6659627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 157
Target Start/End: Original strand, 23370395 - 23370445
Alignment:
Q  107 ttttatcttttgcgatagaaatagcttataagtaagcacttataagataaa 157  Q
    ||||||||||||  |||||||||||||||| ||||| ||||||| ||||||    
T  23370395 ttttatcttttgtaatagaaatagcttatacgtaagtacttatatgataaa 23370445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 134
Target Start/End: Complemental strand, 47480961 - 47480931
Alignment:
Q  104 ttattttatcttttgcgatagaaatagctta 134  Q
    |||||||||||||||||||||||||||||||    
T  47480961 ttattttatcttttgcgatagaaatagctta 47480931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 49365917 - 49365975
Alignment:
Q  139 taagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaaa 197  Q
    ||||||||||||  |||||| || |||||||||||  |||| |||||||||||||||||    
T  49365917 taagcacttatattataaacgtttatgctataagcgcttaactaagttgtttatccaaa 49365975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 136
Target Start/End: Complemental strand, 49517091 - 49517014
Alignment:
Q  58 tagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttata 136  Q
    |||||||| ||| |||||||||||||| ||||||| |  | |||| |||||||||||||||  ||||||||| ||||||    
T  49517091 tagcttatgaaaacagcttatagcttaaatgaaaa-caatttgactttattttatcttttgttatagaaataacttata 49517014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 16322758 - 16322725
Alignment:
Q  164 tgctataagcatttaattaagttgtttatccaaa 197  Q
    ||||||||||| ||||||||||||||||||||||    
T  16322758 tgctataagcacttaattaagttgtttatccaaa 16322725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 156
Target Start/End: Original strand, 23373379 - 23373436
Alignment:
Q  99 tgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataa 156  Q
    |||| |||||||||||||||  |||||||||||| ||| ||||||| ||||| |||||    
T  23373379 tgactttattttatcttttgatatagaaatagctaatacgtaagcagttatatgataa 23373436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 33976743 - 33976674
Alignment:
Q  22 agcttttatcatcttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaa 91  Q
    ||||||| ||| ||||||||||||| |||||||| |||| |||  ||| || |||||| |||||||||||    
T  33976743 agcttttttcaacttatttccataagctctctaggataggttaagaaaacaacttataacttatatgaaa 33976674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 51929800 - 51929845
Alignment:
Q  34 cttatttccataaactctctagtatagcttataaaaccagcttata 79  Q
    ||||||||||||| |||||||| ||||||||| ||| |||||||||    
T  51929800 cttatttccataagctctctagaatagcttatgaaaacagcttata 51929845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 194
Target Start/End: Complemental strand, 52013856 - 52013783
Alignment:
Q  121 atagaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatcc 194  Q
    ||||||||||||||||  |||||| ||| | |||||   || ||||||||| | ||||||||||||||||||||    
T  52013856 atagaaatagcttatacataagcatttacatgataagtatttatgctataaacgtttaattaagttgtttatcc 52013783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 3224468 - 3224412
Alignment:
Q  34 cttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaa 90  Q
    ||||||| |||||  ||||||| ||||||||||||| || | |||||||||||||||    
T  3224468 cttattttcataagttctctagaatagcttataaaaacaccctatagcttatatgaa 3224412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 9656672 - 9656601
Alignment:
Q  57 atagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaata 129  Q
    ||||||||| ||  |||||||||||||||||||||||  || | || ||||||||| |||||| |||||||||    
T  9656672 atagcttatgaacacagcttatagcttatatgaaaataatt-taactttattttattttttgctatagaaata 9656601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 21516300 - 21516256
Alignment:
Q  153 ataaactttaatgctataagcatttaattaagttgtttatccaaa 197  Q
    |||||| || ||| ||||||| |||||||||||||||||||||||    
T  21516300 ataaacatttatgttataagcgtttaattaagttgtttatccaaa 21516256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 118
Target Start/End: Original strand, 27738205 - 27738288
Alignment:
Q  34 cttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttg 118  Q
    ||||| ||||||| |||||  ||||||||||| ||| ||  |||||||||||||||||| |  | |||| |||||||||||||||    
T  27738205 cttatatccataagctctcctgtatagcttatgaaaacaaattatagcttatatgaaaa-caatttgactttattttatcttttg 27738288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 155
Target Start/End: Complemental strand, 45107626 - 45107548
Alignment:
Q  75 ttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagata 155  Q
    ||||| ||||||||||||| ||| |||| ||||||||| ||||   ||||||||||||||||  |||||||||||| ||||    
T  45107626 ttataacttatatgaaaatagtt-tgactttattttat-ttttcttatagaaatagcttatagataagcacttatatgata 45107548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 189
Target Start/End: Complemental strand, 47004108 - 47003978
Alignment:
Q  58 tagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataaa 157  Q
    |||||||| ||| |||||||||| | |||| ||||| ||| |||| ||||||||||| |||  |||||||||||||| |  ||| |||||||| ||||||    
T  47004108 tagcttatgaaaacagcttatagttcatataaaaatagtt-tgactttattttatctattgttatagaaatagcttacatataaacacttatatgataaa 47004010  T
Q  158 ctttaatgctataagcatttaattaagttgtt 189  Q
    | ||  ||||||||||| ||||||||||||||    
T  47004009 catttttgctataagcacttaattaagttgtt 47003978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 35 - 197
Target Start/End: Original strand, 27481320 - 27481481
Alignment:
Q  35 ttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagctta 134  Q
    |||||||||||| || || |  ||||||||| |||  | ||||||||||||||| |||  ||| |||| |  ||||||| ||||  ||||||||||||||    
T  27481320 ttatttccataagctatccatgatagcttatgaaaataacttatagcttatatggaaacagtt-tgacttcgttttatcctttgttatagaaatagctta 27481418  T
Q  135 taagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaaa 197  Q
    ||  ||| ||||||||  |||||| || ||||||||||||  |||||||||||||||||||||    
T  27481419 tacataaacacttatataataaacatttatgctataagcacctaattaagttgtttatccaaa 27481481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 157
Target Start/End: Complemental strand, 27548285 - 27548186
Alignment:
Q  57 atagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataa 156  Q
    ||||||||| ||| |||||||||||||| |||||||   ||  ||| |||||||||||||||| |  |||||||||||||  ||||||||||||||||||    
T  27548285 atagcttatgaaaacagcttatagcttaaatgaaaacaatta-gactttattttatcttttgctaaggaaatagcttatagataagcacttataagataa 27548187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 104 - 183
Target Start/End: Complemental strand, 8445262 - 8445183
Alignment:
Q  104 ttattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaa 183  Q
    |||||||||||||||  ||| |||||||||||||  ||||||||||| |||||||  |||||||||| ||| ||||||||    
T  8445262 ttattttatcttttgttataaaaatagcttataaacaagcacttatatgataaacactaatgctatacgcacttaattaa 8445183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 148
Target Start/End: Complemental strand, 31002781 - 31002693
Alignment:
Q  59 agcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcactta 148  Q
    ||||||| ||| |||||||||||||||||||||||  || |||| ||||||||||||||| | | ||||||| |||||  ||||||||||    
T  31002781 agcttatcaaaacagcttatagcttatatgaaaat-attttgactttattttatcttttgtggttgaaatagtttatacataagcactta 31002693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 197
Target Start/End: Complemental strand, 30134030 - 30133934
Alignment:
Q  99 tgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaaa 197  Q
    |||| |||||||||||||||   || ||||||||||||  ||| |||||||  ||||| |  | ||||||||||||||||||| |||||||||||||||    
T  30134030 tgactttattttatcttttgttgtaaaaatagcttatacataaacacttat--gataagcgcttatgctataagcatttaattgagttgtttatccaaa 30133934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 197
Target Start/End: Original strand, 22388001 - 22388091
Alignment:
Q  107 ttttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaaa 197  Q
    ||||||||||||  |||||||||||||||   |||||||||| | |||||   || ||| |||||||  ||||||||||||||||||||||    
T  22388001 ttttatcttttgttatagaaatagcttatccataagcacttaaatgataagtgtttatgttataagcgcttaattaagttgtttatccaaa 22388091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 197
Target Start/End: Complemental strand, 33894622 - 33894507
Alignment:
Q  79 agcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagcattta 178  Q
    ||||||||||||||  ||| |||| |||||||||||||||  ||||||||||||||||  |||||||||| | ||| ||| || |||  ||||||| ||     
T  33894622 agcttatatgaaaacagtt-tgac-ttattttatcttttgttatagaaatagcttatacataagcacttacatgatgaacattcatgtcataagcactt- 33894526  T
Q  179 attaagttgtttatccaaa 197  Q
    ||||| |||||||||||||    
T  33894525 attaaattgtttatccaaa 33894507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 92
Target Start/End: Complemental strand, 38010759 - 38010701
Alignment:
Q  34 cttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaa 92  Q
    |||||||||||||  ||||||| |||| |||| ||| ||||||||||||||||||||||    
T  38010759 cttatttccataagttctctaggatagattatgaaaacagcttatagcttatatgaaaa 38010701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 40689034 - 40689107
Alignment:
Q  57 atagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagc 131  Q
    ||||||||| ||  |||||||||||||||||||||||  || | || |||||||||||||||| |||||||||||    
T  40689034 atagcttatgaacacagcttatagcttatatgaaaataatt-taactttattttatcttttgctatagaaatagc 40689107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 130
Target Start/End: Complemental strand, 2999237 - 2999141
Alignment:
Q  34 cttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatag 130  Q
    |||||||||||||  ||| ||| |||||||| | || || |||| | |||||||||||| || | |||| |||||||||||||||  ||||||||||    
T  2999237 cttatttccataagatctttagaatagcttaaagaaacaacttacatcttatatgaaaaacggtttgactttattttatcttttgttatagaaatag 2999141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 197
Target Start/End: Original strand, 7100687 - 7100804
Alignment:
Q  78 tagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagcattt 177  Q
    |||||||||||||||    | |||| || ||||||||||||  ||| |||||||||| |   ||| ||||||| |||||||  | || ||||||||||||    
T  7100687 tagcttatatgaaaacaaatttgacttttttttatcttttgttataaaaatagcttacac--aagtacttatatgataaacgcttatactataagcattt 7100784  T
Q  178 aattaagttgtttatccaaa 197  Q
    |||||||| |||||||||||    
T  7100785 aattaagtagtttatccaaa 7100804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 197
Target Start/End: Original strand, 753293 - 753391
Alignment:
Q  99 tgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaaa 197  Q
    |||| |||||| || |||||  ||||||||||  ||||   |||| |||||| ||||||  || ||||||||| || ||||||||||||||||||||||    
T  753293 tgactttatttcatattttgttatagaaatagtgtatacacaagcgcttatatgataaatgtttatgctataaacacttaattaagttgtttatccaaa 753391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 158
Target Start/End: Complemental strand, 992093 - 991992
Alignment:
Q  56 tatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagata 155  Q
    |||||||||| |||  || ||||| |||||||||||||  || || | ||||||||| |||||  ||||||| | |||||| ||||||||||||| ||||    
T  992093 tatagcttatgaaaaaagtttataccttatatgaaaatattt-tgtctttattttattttttgttatagaaacaacttatacgtaagcacttatatgata 991995  T
Q  156 aac 158  Q
    |||    
T  991994 aac 991992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 157
Target Start/End: Complemental strand, 7244675 - 7244625
Alignment:
Q  107 ttttatcttttgcgatagaaatagcttataagtaagcacttataagataaa 157  Q
    ||||||||||||  ||||||||||||||||  |||||||||||| ||||||    
T  7244675 ttttatcttttgatatagaaatagcttatacataagcacttatatgataaa 7244625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 148
Target Start/End: Complemental strand, 28165136 - 28165023
Alignment:
Q  34 cttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagctt 133  Q
    ||||||||||||| ||||| |  ||||||||||||  ||| ||||||||||||| |||| |  | |||| | |||||||||||||  ||||||| | |||    
T  28165136 cttatttccataagctctccatgatagcttataaagacagtttatagcttatattaaaa-caatttgacttcattttatcttttgttatagaaagaactt 28165038  T
Q  134 ataagtaagcactta 148  Q
    |||  ||||||||||    
T  28165037 atacataagcactta 28165023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 89
Target Start/End: Original strand, 28340878 - 28340924
Alignment:
Q  43 ataaactctctagtatagcttataaaaccagcttatagcttatatga 89  Q
    |||| |||||||| ||||||||| ||| |||||||||||||||||||    
T  28340878 ataagctctctaggatagcttatgaaaacagcttatagcttatatga 28340924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 197
Target Start/End: Complemental strand, 31341175 - 31341077
Alignment:
Q  99 tgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaaa 197  Q
    |||| |||||||||||||||  ||| ||||||||||||  |||||| ||| | ||||| |  | |||| ||||||  || |||||||||||||||||||    
T  31341175 tgactttattttatcttttgttatacaaatagcttatacataagcatttagatgataagcgcttatgcaataagcgcttgattaagttgtttatccaaa 31341077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 145
Target Start/End: Original strand, 45813269 - 45813315
Alignment:
Q  99 tgacattattttatcttttgcgatagaaatagcttataagtaagcac 145  Q
    |||| |||||||||||||||  ||||||||||||||||| |||||||    
T  45813269 tgactttattttatcttttggtatagaaatagcttataaataagcac 45813315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 149
Target Start/End: Original strand, 12234886 - 12235026
Alignment:
Q  8 ttatgacatgt--atcagcttttatcatcttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacatt 105  Q
    |||||||||||  || |||| || ||| ||||||||||||| |||||||| | |||| ||||||  | |||||| |||||| |||||  | | |||||||    
T  12234886 ttatgacatgtctataagctgttttcagcttatttccataagctctctaggaaagctcataaaa--atcttataacttatacgaaaacagat-tgacatt 12234982  T
Q  106 attttatcttttgcgatagaaatagcttataagtaagcacttat 149  Q
    |||||||||||||  ||| | | ||||||||  |||||||||||    
T  12234983 attttatcttttgtcatacatacagcttatacataagcacttat 12235026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 22759230 - 22759173
Alignment:
Q  35 ttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaa 92  Q
    |||||||||||| |||||  | ||||||||| ||| |||||| |||||||||||||||    
T  22759230 ttatttccataagctctcctggatagcttatgaaatcagcttttagcttatatgaaaa 22759173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 148
Target Start/End: Original strand, 27378854 - 27378965
Alignment:
Q  35 ttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagctta 134  Q
    |||||| ||||| ||||| || |||| |||| ||| ||| || ||| |||||||||||  ||||| || |||||||| ||||||  ||||||||||||||    
T  27378854 ttattttcataagctctccaggatagtttatgaaaacagattgtagtttatatgaaaacagttct-actttatttta-cttttgtaatagaaatagctta 27378951  T
Q  135 taagtaagcactta 148  Q
    ||  ||||||||||    
T  27378952 tacataagcactta 27378965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 197
Target Start/End: Original strand, 28340427 - 28340583
Alignment:
Q  40 tccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagt 139  Q
    ||||||| ||||| || ||||||| | ||| || |||||| |||| |||||||  ||| |||| |||||||||  ||||    ||||||||||||||  |    
T  28340427 tccataagctctccagcatagcttctgaaaacaacttataacttacatgaaaacagtt-tgactttattttattgtttgttgaagaaatagcttatacat 28340525  T
Q  140 aagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaaa 197  Q
     |  |||| || |||||||  |||||||||||||| ||||||||| ||| ||||||||    
T  28340526 taatacttgtacgataaacactaatgctataagcacttaattaagctgtatatccaaa 28340583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 197
Target Start/End: Original strand, 29769052 - 29769081
Alignment:
Q  168 ataagcatttaattaagttgtttatccaaa 197  Q
    ||||||||||||||||||||||||||||||    
T  29769052 ataagcatttaattaagttgtttatccaaa 29769081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 39506001 - 39505944
Alignment:
Q  34 cttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaa 91  Q
    ||||||||||||||||||| || ||||||||| ||| || ||||  ||||||||||||    
T  39506001 cttatttccataaactctccagaatagcttatgaaaacaacttaatgcttatatgaaa 39505944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 136
Target Start/End: Original strand, 3802186 - 3802265
Alignment:
Q  56 tatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttata 136  Q
    |||||||| ||||| |||||||||  ||||||||||| || | |||| |||||||| |||||   ||||||||||||||||    
T  3802186 tatagcttttaaaaacagcttataatttatatgaaaa-cgatttgactttattttaccttttattatagaaatagcttata 3802265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 136
Target Start/End: Original strand, 5006540 - 5006635
Alignment:
Q  40 tccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttata 136  Q
    ||||| ||||||| ||  |||||||| ||| ||  ||||| ||||||||||||  ||| |||| |||||||||||||||  |||| |||||||||||    
T  5006540 tccatgaactctccagggtagcttatgaaaacaatttataccttatatgaaaacagtt-tgactttattttatcttttgttataggaatagcttata 5006635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 43021102 - 43021066
Alignment:
Q  161 taatgctataagcatttaattaagttgtttatccaaa 197  Q
    ||||||||||||||||||  |||||||||||||||||    
T  43021102 taatgctataagcatttatataagttgtttatccaaa 43021066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 99 - 197
Target Start/End: Original strand, 20982224 - 20982322
Alignment:
Q  99 tgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaaa 197  Q
    |||| |||||||||| ||||  ||||||||||||||||  |||||||||||| ||||| |  | |||||||||||| ||||| ||||||||||||||||    
T  20982224 tgactttattttatcctttgttatagaaatagcttatacataagcacttatatgataagcacttatgctataagcacttaatgaagttgtttatccaaa 20982322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 104 - 197
Target Start/End: Complemental strand, 26516274 - 26516181
Alignment:
Q  104 ttattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaaa 197  Q
    |||||||||||||||   |||||||||||||||  |||||||||||| ||||| |  | |||||||||||  ||||||||||||||||||||||    
T  26516274 ttattttatcttttgttttagaaatagcttatacataagcacttatatgataagcgcttatgctataagcgcttaattaagttgtttatccaaa 26516181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 136
Target Start/End: Complemental strand, 16889779 - 16889679
Alignment:
Q  35 ttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagctta 134  Q
    ||||||||||||||||||||| ||||||||| ||| ||||||||||||| ||| ||||  ||| |||| | | |||||||||||  || |||||||||||    
T  16889779 ttatttccataaactctctagcatagcttatgaaaacagcttatagcttctataaaaacagtt-tgacttaagtttatcttttgttatggaaatagctta 16889681  T
Q  135 ta 136  Q
    ||    
T  16889680 ta 16889679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 194
Target Start/End: Original strand, 35135727 - 35135846
Alignment:
Q  74 cttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagc 173  Q
    |||||||||||||||||||| ||| |||| |||||||||||||||  ||||||||| ||||||  ||| |||||||| | ||| |  | ||||||| ||     
T  35135727 cttatagcttatatgaaaatagtt-tgactttattttatcttttgttatagaaatatcttatacataaacacttatatgttaagcacttatgctatgagt 35135825  T
Q  174 atttaattaagttgtttatcc 194  Q
     || |||||||||||||||||    
T  35135826 gttgaattaagttgtttatcc 35135846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 196
Target Start/End: Original strand, 37063125 - 37063260
Alignment:
Q  60 gcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataaact 159  Q
    |||||| |||||||||   | ||||||||||||| ||| |||| |||||||||||||||  |||||||||| |||||  |||||| ||||| || || |     
T  37063125 gcttatgaaaccagctggcaacttatatgaaaatagtt-tgactttattttatcttttgttatagaaatagtttatacataagcatttatatgacaagca 37063223  T
Q  160 ttaatgctataagcatttaattaagttgtttatccaa 196  Q
    || |||||||||| | || |||||| |||||||||||    
T  37063224 tttatgctataagtagttgattaagctgtttatccaa 37063260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 138
Target Start/End: Complemental strand, 14295537 - 14295448
Alignment:
Q  48 ctctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataag 138  Q
    ||||| || ||||||||  ||| ||||||||||||||||||||||  ||| |||| |||||||||||||||  |||||||||||| |||||    
T  14295537 ctctccaggatagcttacgaaaacagcttatagcttatatgaaaacagtt-tgactttattttatcttttgttatagaaatagctaataag 14295448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 197
Target Start/End: Original strand, 39257438 - 39257573
Alignment:
Q  60 gcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataaact 159  Q
    |||||| ||| || ||||||| |||||||||||  | | |||| |||||||| ||||||  ||||| ||||| ||||  |||||||||| | |||||       
T  39257438 gcttatgaaaacaacttatagtttatatgaaaa--ggtttgactttattttaccttttgttatagagatagcatatacataagcacttacatgataatag 39257535  T
Q  160 ttaatgctataagcatttaattaagttgtttatccaaa 197  Q
    || |||||||||||  ||||||||||||||||||||||    
T  39257536 tttatgctataagcgcttaattaagttgtttatccaaa 39257573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 197
Target Start/End: Original strand, 28586791 - 28586953
Alignment:
Q  34 cttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagctt 133  Q
    |||||||| |||| |||||||| ||||||  | ||| |||||||||  |||||||||||  ||| |||| |||||||||||||||  ||||||||||  |    
T  28586791 cttatttcgataagctctctaggatagctcgtcaaaacagcttataatttatatgaaaacagtt-tgactttattttatcttttgttatagaaatagtgt 28586889  T
Q  134 ataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaaa 197  Q
    |||  ||| ||| |||| ||||  | || ||| |||  ||| |||||| |||||||||||||||    
T  28586890 atacataaccacatatatgatagtcgtttatgttattggcacttaatttagttgtttatccaaa 28586953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 150
Target Start/End: Complemental strand, 29588924 - 29588810
Alignment:
Q  34 cttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagctt 133  Q
    ||||||||||||||||||  |  ||||||||  ||| ||  ||||||||||||||||||   || |  ||||||||||| |||||  |||||||||||||    
T  29588924 cttatttccataaactcttcaacatagcttacgaaaacactttatagcttatatgaaaacaatttt--cattattttatattttgttatagaaatagctt 29588827  T
Q  134 ataagtaagcacttata 150  Q
    |||  ||||||||||||    
T  29588826 atacataagcacttata 29588810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 149
Target Start/End: Original strand, 9202800 - 9202887
Alignment:
Q  61 cttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcacttat 149  Q
    ||||| ||| |||||||| |||||||||||||   || | || |||||||||||||||| | ||||||||||||||  |||||||||||    
T  9202800 cttatgaaaacagcttattgcttatatgaaaacaatt-taactttattttatcttttgctacagaaatagcttatatataagcacttat 9202887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 10391329 - 10391277
Alignment:
Q  104 ttattttatcttttgcgatagaaatagcttataagtaagcacttataagataa 156  Q
    |||||||||||||||  ||| |||||||||||| ||||||||||||| |||||    
T  10391329 ttattttatcttttgttataaaaatagcttatacgtaagcacttatatgataa 10391277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 197
Target Start/End: Original strand, 16945076 - 16945170
Alignment:
Q  105 tattttatcttttgcgatagaaatagcttataagtaagcacttataa--gataaactttaatgctataagcatttaattaagttgtttatccaaa 197  Q
    |||||||||||||    |||||||||||||||  ||||||||||||   ||||| |||| ||||||||| || ||||||| | ||||||||||||    
T  16945076 tattttatcttttcttgtagaaatagcttatacataagcacttatacatgataagcttttatgctataaacacttaattaggctgtttatccaaa 16945170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 136
Target Start/End: Complemental strand, 26516449 - 26516344
Alignment:
Q  30 tcatcttatttccataaactct-ctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaat 128  Q
    |||||||||||||||||| ||| |||| ||||||||| ||| ||| ||||| ||||||||||| | ||| |||| ||||||||||| |||  | |||| |    
T  26516449 tcatcttatttccataaaatctgctag-atagcttatgaaaacagtttataacttatatgaaagtagtt-tgactttattttatctattgttagagaact 26516352  T
Q  129 agcttata 136  Q
    ||||||||    
T  26516351 agcttata 26516344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 198
Target Start/End: Complemental strand, 30585364 - 30585329
Alignment:
Q  163 atgctataagcatttaattaagttgtttatccaaat 198  Q
    |||||||||||| |||||||||||||||||||||||    
T  30585364 atgctataagcaattaattaagttgtttatccaaat 30585329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 156
Target Start/End: Complemental strand, 36539764 - 36539670
Alignment:
Q  61 cttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataa 156  Q
    ||||||||| || |||||||||||||||||||  | | |||| |||||||||||||||  | | |||||||||| |  |||||||||||| |||||    
T  36539764 cttataaaaacaacttatagcttatatgaaaacaggt-tgactttattttatcttttgataaacaaatagcttacacataagcacttatatgataa 36539670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 89
Target Start/End: Original strand, 36542307 - 36542362
Alignment:
Q  34 cttatttccataaactctctagtatagcttataaaaccagcttatagcttatatga 89  Q
    |||||||||| || |||||||| |||||||||  || |||||||||||||||||||    
T  36542307 cttatttccacaagctctctaggatagcttatggaatcagcttatagcttatatga 36542362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 3951651 - 3951601
Alignment:
Q  43 ataaactctctagtatagcttataaaaccagcttatagcttatatgaaaat 93  Q
    |||| ||||| || ||||||||||||| |||||||||||| ||||||||||    
T  3951651 ataatctctccaggatagcttataaaaacagcttatagctaatatgaaaat 3951601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 197
Target Start/End: Complemental strand, 4855630 - 4855596
Alignment:
Q  163 atgctataagcatttaattaagttgtttatccaaa 197  Q
    |||||||||| ||||||||||||||||||||||||    
T  4855630 atgctataagtatttaattaagttgtttatccaaa 4855596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 7096203 - 7096264
Alignment:
Q  85 tatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcactt 147  Q
    ||||||||| ||| |||| |||||||||||||||  ||||||||||||||||  |||||||||    
T  7096203 tatgaaaatggtt-tgactttattttatcttttgttatagaaatagcttatacataagcactt 7096264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 13244592 - 13244642
Alignment:
Q  121 atagaaatagcttataagtaagcacttataagataaactttaatgctataa 171  Q
    |||||||||||||||||||||| ||||||| ||||| | || |||||||||    
T  13244592 atagaaatagcttataagtaagaacttatatgataagcgtttatgctataa 13244642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 26390815 - 26390873
Alignment:
Q  34 cttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaa 92  Q
    ||||||||||||| ||||| || ||| ||||  |||||| |||||||||||||||||||    
T  26390815 cttatttccataagctctccaggataacttaggaaaccatcttatagcttatatgaaaa 26390873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 197
Target Start/End: Original strand, 27104527 - 27104601
Alignment:
Q  123 agaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaaa 197  Q
    ||||||| |||||| ||||||||||||| |||||   || ||||||||||| || |||| |||||||| ||||||    
T  27104527 agaaataacttatacgtaagcacttatatgataagtgtttatgctataagcgttaaattgagttgtttttccaaa 27104601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 197
Target Start/End: Complemental strand, 28981943 - 28981889
Alignment:
Q  143 cacttataagataaactttaatgctataagcatttaattaagttgtttatccaaa 197  Q
    |||||||| ||||||| || |||||||||||| |||||||||||  |||||||||    
T  28981943 cacttatatgataaacgtttatgctataagcaattaattaagttacttatccaaa 28981889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 197
Target Start/End: Original strand, 29115302 - 29115400
Alignment:
Q  99 tgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaaa 197  Q
    |||| |||||||| ||||||   |||||||||||||||  ||||||||| || ||||||  || |||||||||||   |||||||  ||||||||||||    
T  29115302 tgactttattttaccttttgttgtagaaatagcttatacataagcacttttatgataaatgtttatgctataagcgcgtaattaaagtgtttatccaaa 29115400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 92
Target Start/End: Complemental strand, 36638804 - 36638734
Alignment:
Q  22 agcttttatcatcttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaa 92  Q
    ||||||| ||| ||||||||||||| |||||||| ||| ||||| ||| ||||||   |||||||||||||    
T  36638804 agcttttttcagcttatttccataagctctctaggataacttatgaaaacagctttaggcttatatgaaaa 36638734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 37588385 - 37588443
Alignment:
Q  34 cttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaa 92  Q
    ||||||||||||| ||||| || ||| ||||| ||| || |||||||||||||||||||    
T  37588385 cttatttccataagctctccagaataacttatgaaaacaacttatagcttatatgaaaa 37588443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 23999096 - 23999043
Alignment:
Q  140 aagcacttataagataaactttaatgctataagcatttaattaagttgtttatc 193  Q
    ||||||||||| ||||| |  | || ||||||||||||||||||||||||||||    
T  23999096 aagcacttatatgataagcccttattctataagcatttaattaagttgtttatc 23999043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 136
Target Start/End: Complemental strand, 40097190 - 40097153
Alignment:
Q  99 tgacattattttatcttttgcgatagaaatagcttata 136  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  40097190 tgacattattttatcttttgtgatagaaatagtttata 40097153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 136
Target Start/End: Original strand, 4014518 - 4014550
Alignment:
Q  104 ttattttatcttttgcgatagaaatagcttata 136  Q
    |||||||||||||||| ||||||||||||||||    
T  4014518 ttattttatcttttgctatagaaatagcttata 4014550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 10391375 - 10391331
Alignment:
Q  45 aaactctctagtatagcttataaaaccagcttatagcttatatga 89  Q
    ||||||||||| ||||||||||||| ||  |||||||||||||||    
T  10391375 aaactctctaggatagcttataaaaacaaattatagcttatatga 10391331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 136
Target Start/End: Original strand, 12595545 - 12595577
Alignment:
Q  104 ttattttatcttttgcgatagaaatagcttata 136  Q
    |||||||||||||||| ||||||||||||||||    
T  12595545 ttattttatcttttgctatagaaatagcttata 12595577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 13224405 - 13224353
Alignment:
Q  104 ttattttatcttttgcgatagaaatagcttataagtaagcacttataagataa 156  Q
    |||||||||||||||  ||||||||||||||||  ||||||||| || |||||    
T  13224405 ttattttatcttttgttatagaaatagcttatacataagcacttctatgataa 13224353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 15003540 - 15003595
Alignment:
Q  35 ttatttccataaactctctagtatagcttat-aaaaccagcttatagcttatatgaa 90  Q
    |||||||||||| |||||| | ||||||||| ||||||| |||||||||||||||||    
T  15003540 ttatttccataagctctcttggatagcttatgaaaacca-cttatagcttatatgaa 15003595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 190
Target Start/End: Complemental strand, 34690918 - 34690764
Alignment:
Q  34 cttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagctt 133  Q
    ||||||||||||| ||||| |  || |||||| | | || ||||||||| |||||||| |  || |||| |||||||||||||||  ||||||||||| |    
T  34690918 cttatttccataagctctccaagatggcttatgagaacaacttatagct-atatgaaagta-ttgtgactttattttatcttttgttatagaaatagcgt 34690821  T
Q  134 ataagtaagcacttataagataaactttaatgctataagcatttaattaagttgttt 190  Q
    |||  |||| ||||| | ||| ||| || ||| |||||||  ||| |||||||||||    
T  34690820 atacataaggacttaaatgattaacatttatggtataagcgcttagttaagttgttt 34690764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 136
Target Start/End: Original strand, 38047886 - 38047981
Alignment:
Q  40 tccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttata 136  Q
    ||||||| ||||| || ||||||||| ||| |||| |||||  |||||||||||  || |||| |||||||||||||||  | ||| ||||||||||    
T  38047886 tccataagctctccaggatagcttatgaaaacagcatatagtatatatgaaaataatt-tgactttattttatcttttgttagagatatagcttata 38047981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 34 - 196
Target Start/End: Original strand, 10198505 - 10198664
Alignment:
Q  34 cttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagctt 133  Q
    ||||||||||||| |||||||| |||| |||||||| |||| |||| ||||||||||||| |   |||| |||||||||||||    |||  ||||||||    
T  10198505 cttatttccataatctctctaggatagattataaaaacagcctatatcttatatgaaaatag---tgactttattttatctttacttatatgaatagctt 10198601  T
Q  134 ataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaa 196  Q
    |||   ||| ||||||| ||||| |  | ||||||||||||  ||||||||||||| ||||||    
T  10198602 atacaaaagtacttatatgataagcactcatgctataagcacctaattaagttgttaatccaa 10198664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 156
Target Start/End: Original strand, 17952749 - 17952847
Alignment:
Q  57 atagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataa 156  Q
    ||||||||| ||| || ||| |||||||||||||||| ||| |||| |||||||||||||||  ||||||||||||||||  ||||| |||||| |||||    
T  17952749 atagcttatgaaaacatcttgtagcttatatgaaaatagtt-tgactttattttatcttttgttatagaaatagcttatatataagctcttatatgataa 17952847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 197
Target Start/End: Original strand, 33197328 - 33197426
Alignment:
Q  99 tgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaaa 197  Q
    |||| ||||| |||||||||  ||||||||||||||||  |||||||||||| ||||| | || ||| ||||||  ||||||| |||||||||||||||    
T  33197328 tgactttattctatcttttgttatagaaatagcttatagataagcacttatatgataagcgtttatgttataagtgtttaatttagttgtttatccaaa 33197426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 197
Target Start/End: Complemental strand, 10143211 - 10143055
Alignment:
Q  40 tccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagt 139  Q
    ||||||||||||| |  ||||||||| |||  | |||||||||||||| ||||  ||| |||| | |||||||||||||  ||||||||| ||||||  |    
T  10143211 tccataaactctccatgatagcttatgaaaaaaacttatagcttatataaaaacagtt-tgacttaattttatcttttgttatagaaataacttatacat 10143113  T
Q  140 aagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaaa 197  Q
    ||||||||||  |||||  |||  |||| |||||| ||||||||| ||| ||||||||    
T  10143112 aagcacttattcgataagtttttgtgctgtaagcacttaattaagatgtatatccaaa 10143055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 197
Target Start/End: Complemental strand, 3102710 - 3102576
Alignment:
Q  62 ttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataaacttt 161  Q
    |||| ||| ||||| |||| |||||| ||||| ||| |||| ||||||||| |||||| ||| ||||||||||||  |||||| ||||| ||||||| ||    
T  3102710 ttatgaaaacagctaatagattatataaaaatagtt-tgactttattttatattttgctataaaaatagcttatacataagcagttatatgataaacatt 3102612  T
Q  162 aatgctataagcatttaattaagttgtttatccaaa 197  Q
     ||| | |||||  ||||| ||| ||||||||||||    
T  3102611 tatgttttaagcgcttaataaagctgtttatccaaa 3102576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 197
Target Start/End: Original strand, 1939329 - 1939517
Alignment:
Q  8 ttatgacatgt--atcagcttttatcatcttatttccataaactctctagtatagcttataaaaccagcttatagct-tatatgaaaatcgttctgacat 104  Q
    |||||||||||  || |||| || ||| ||||||||||||| ||||| |||||||||||| ||| ||| ||||||||  |||||||||| ||| | || |    
T  1939329 ttatgacatgtccataagctgttttcaacttatttccataagctctccagtatagcttatgaaaacag-ttatagctcaatatgaaaatagtt-tcactt 1939426  T
Q  105 tattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaaa 197  Q
    ||||||||||||||  ||||||||| ||||||  || || ||||||| ||||   || ||||||| |||| ||||  ||||||||||| ||||    
T  1939427 tattttatcttttgttatagaaataacttata--tatgcgcttataaaataattgtttatgctatgagcacttaacgaagttgtttattcaaa 1939517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 193
Target Start/End: Complemental strand, 31461419 - 31461325
Alignment:
Q  99 tgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatc 193  Q
    |||| |||||||||||||||  ||||||||||||||||  ||| |||||||| |||| || || |||||| |||   ||||||||||||||||||    
T  31461419 tgactttattttatcttttgttatagaaatagcttatatataaccacttatatgatatacgtttatgctagaagtgcttaattaagttgtttatc 31461325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 197
Target Start/End: Original strand, 11393460 - 11393553
Alignment:
Q  104 ttattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaaa 197  Q
    ||||| |||||||||  ||||||||||||||||  |||||||||||| |||||||  |  |||||||||   ||||||||| ||||||||||||    
T  11393460 ttattatatcttttgatatagaaatagcttatagataagcacttatatgataaacacttgtgctataagtgcttaattaagctgtttatccaaa 11393553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 197
Target Start/End: Original strand, 11410121 - 11410214
Alignment:
Q  104 ttattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaaa 197  Q
    ||||| |||||||||  ||||||||||||||||  |||||||||||| |||||||  |  |||||||||   ||||||||| ||||||||||||    
T  11410121 ttattatatcttttgatatagaaatagcttatagataagcacttatatgataaacacttgtgctataagtgcttaattaagctgtttatccaaa 11410214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 149
Target Start/End: Complemental strand, 25609837 - 25609727
Alignment:
Q  38 tttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataa 137  Q
    ||||| |||||| |||||||||  || ||||| || ||||||||||||| ||||||   | |||| ||||||||||||||   ||||||||||||||||     
T  25609837 tttccttaaactttctagtataatttctaaaaacaacttatagcttatacgaaaataaat-tgactttattttatcttttcttatagaaatagcttatac 25609739  T
Q  138 gtaagcacttat 149  Q
     |||||||||||    
T  25609738 ataagcacttat 25609727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 136
Target Start/End: Original strand, 35099627 - 35099726
Alignment:
Q  37 atttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttata 136  Q
    |||||||||| ||||| || ||||||||| ||| ||||||||| |||  |||||||| ||| |||  |||||||||||||||  ||||||| || |||||    
T  35099627 atttccataagctctcaaggatagcttatgaaagcagcttataactttaatgaaaatagttttgattttattttatcttttgttatagaaacagtttata 35099726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 93
Target Start/End: Original strand, 13736319 - 13736377
Alignment:
Q  35 ttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaat 93  Q
    |||||| ||||| |||||||||||||||||| ||| |||||||||||| || |||||||    
T  13736319 ttattttcataagctctctagtatagcttatgaaaacagcttatagctgatgtgaaaat 13736377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 22681210 - 22681268
Alignment:
Q  34 cttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaa 92  Q
    |||||||||||||  ||||||| |||| |||| ||| ||||||||||||||||||||||    
T  22681210 cttatttccataagttctctaggatagattatgaaaacagcttatagcttatatgaaaa 22681268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 183
Target Start/End: Original strand, 42817401 - 42817549
Alignment:
Q  34 cttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagctt 133  Q
    |||| |||||||| ||||  || ||||||||| ||| ||| ||||  ||||||||||||  | | |||| | |||||||||||||  ||||||||| | |    
T  42817401 cttacttccataagctcttcagaatagcttatgaaaacagtttattacttatatgaaaacagct-tgacttcattttatcttttggtatagaaataacat 42817499  T
Q  134 ataagtaagcacttataagataaactttaatgctataagcatttaattaa 183  Q
    |||| | | |||||||| |||||||  | |||||||||||| ||||||||    
T  42817500 ataaatcaacacttatatgataaacgcttatgctataagcacttaattaa 42817549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 192
Target Start/End: Original strand, 28803537 - 28803688
Alignment:
Q  40 tccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagt 139  Q
    ||||||| ||||| || |||| |||  ||| || ||| ||||||||||||||   ||| |||| |||||||||||||||  || |||||| ||||||  |    
T  28803537 tccataagctctccaggatagtttaagaaaacaacttgtagcttatatgaaatcagtt-tgactttattttatcttttgttatcgaaataacttatatat 28803635  T
Q  140 aagcacttataagataaactttaatgctataagcatttaattaagttgtttat 192  Q
    ||||||||||| ||||| | || |||| |||| || ||||||||  |||||||    
T  28803636 aagcacttatatgataagcatttatgccataaacacttaattaaactgtttat 28803688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 144
Target Start/End: Complemental strand, 15377787 - 15377701
Alignment:
Q  57 atagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagca 144  Q
    ||||||||| ||| ||||||||| |||||||||||| |  ||| || |||||||||| ||||  |||||| |||||||||| ||||||    
T  15377787 atagcttatgaaaacagcttataacttatatgaaaa-caatctaactttattttatcctttggtatagaagtagcttataaataagca 15377701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 92
Target Start/End: Complemental strand, 16353883 - 16353848
Alignment:
Q  57 atagcttataaaaccagcttatagcttatatgaaaa 92  Q
    ||||||||||||| ||||||||||||||||||||||    
T  16353883 atagcttataaaaacagcttatagcttatatgaaaa 16353848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 158
Target Start/End: Original strand, 18962064 - 18962186
Alignment:
Q  35 ttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagctta 134  Q
    |||||||||||  ||||| |  ||||||||| |||  || ||||||||||||||||||  ||| | || |||||||||||||||  ||| |||||||| |    
T  18962064 ttatttccatagtctctccatgatagcttatgaaaatagtttatagcttatatgaaaacagtt-taactttattttatcttttgttataaaaatagctaa 18962162  T
Q  135 taagtaagcacttataagataaac 158  Q
    ||  |||||||||| | |||||||    
T  18962163 tacataagcacttacatgataaac 18962186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 133
Target Start/End: Original strand, 31740024 - 31740082
Alignment:
Q  74 cttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagctt 133  Q
    |||||||||||||||||||| ||| |||| ||||||||||||| |  |||||||||||||    
T  31740024 cttatagcttatatgaaaatagtt-tgactttattttatctttagttatagaaatagctt 31740082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 197
Target Start/End: Original strand, 32757625 - 32757656
Alignment:
Q  166 ctataagcatttaattaagttgtttatccaaa 197  Q
    ||||||||||||||||||||||||||||||||    
T  32757625 ctataagcatttaattaagttgtttatccaaa 32757656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 197
Target Start/End: Original strand, 5752753 - 5752787
Alignment:
Q  163 atgctataagcatttaattaagttgtttatccaaa 197  Q
    |||||||||||| ||||||||||||||||||||||    
T  5752753 atgctataagcagttaattaagttgtttatccaaa 5752787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 115
Target Start/End: Original strand, 7103507 - 7103588
Alignment:
Q  34 cttatttccataaactctctagtatagcttat-aaaaccagcttatagcttatatgaaaatcgttctgacattattttatctt 115  Q
    ||||||| || ||||||||||  ||||||||| |||| ||||||||||||||||| ||||  ||| |||| ||||||||||||    
T  7103507 cttattttcacaaactctctaagatagcttatgaaaaacagcttatagcttatattaaaacagtt-tgactttattttatctt 7103588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 156
Target Start/End: Complemental strand, 9478348 - 9478223
Alignment:
Q  30 tcatcttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaata 129  Q
    |||||||| |||||| ||||||| |  ||||||||  ||  |||| ||||||||||||||||||  || |||  |||||||||||  ||  |||||||||    
T  9478348 tcatcttacttccatcaactctccacgatagcttacgaacacagcatatagcttatatgaaaat-attttgagtttattttatctactgttatagaaata 9478250  T
Q  130 gcttataagtaagcacttataagataa 156  Q
    |||||||  ||| |||||||| |||||    
T  9478249 gcttatacataaacacttatatgataa 9478223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 146
Target Start/End: Complemental strand, 12215850 - 12215741
Alignment:
Q  36 tatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttat 135  Q
    |||| |||||| ||||| || || |||||||||| ||||||||||| |||||| |||  | || ||| |||||||||||||||   ||||||||| ||||    
T  12215850 tattcccataagctctcaaggatggcttataaaaacagcttatagcatatatggaaacgggtc-gactttattttatcttttgttgtagaaatagtttat 12215752  T
Q  136 aagtaagcact 146  Q
    |  ||||||||    
T  12215751 acataagcact 12215741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 136
Target Start/End: Complemental strand, 32694257 - 32694156
Alignment:
Q  34 cttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagctt 133  Q
    |||||||||| || || ||||| |||||||||  || || ||||||  |||||| ||||| || ||||  |||||||||||||||  |||||||||||||    
T  32694257 cttatttccacaatctatctaggatagcttatgcaaacaacttataaattatataaaaatagt-ctgattttattttatcttttgatatagaaatagctt 32694159  T
Q  134 ata 136  Q
    |||    
T  32694158 ata 32694156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 43141920 - 43141862
Alignment:
Q  30 tcatcttatttccataaactctctagtatagcttataaaaccagcttatagcttatatg 88  Q
    |||| |||||||||||||||||  || ||||||||| ||| || |||||||||||||||    
T  43141920 tcattttatttccataaactcttcaggatagcttatgaaaacatcttatagcttatatg 43141862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 149
Target Start/End: Complemental strand, 4026793 - 4026748
Alignment:
Q  104 ttattttatcttttgcgatagaaatagcttataagtaagcacttat 149  Q
    |||||||||||||||| ||| ||||||||||||  |||||||||||    
T  4026793 ttattttatcttttgctataaaaatagcttatagataagcacttat 4026748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 7862796 - 7862739
Alignment:
Q  36 tatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaat 93  Q
    ||||| || ||||||| ||  ||||||||| |||||| ||||||||||||||||||||    
T  7862796 tatttgcaaaaactctgtatgatagcttatgaaaccaacttatagcttatatgaaaat 7862739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 33502744 - 33502703
Alignment:
Q  44 taaactctctagtatagcttataaaaccagcttatagcttat 85  Q
    |||||||||||| ||| ||||||||| |||||||||||||||    
T  33502744 taaactctctaggataacttataaaaacagcttatagcttat 33502703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 42420388 - 42420433
Alignment:
Q  104 ttattttatcttttgcgatagaaatagcttataagtaagcacttat 149  Q
    |||||||||||||||| ||| |||||||||||| |||||| |||||    
T  42420388 ttattttatcttttgctataaaaatagcttatacgtaagcgcttat 42420433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 118
Target Start/End: Original strand, 6993749 - 6993832
Alignment:
Q  34 cttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttg 118  Q
    ||||||| ||||| ||||| || ||||||||| ||| || | ||||||||||||||| ||  || |||| |||||||||||||||    
T  6993749 cttattttcataagctctcaagcatagcttatgaaaacaacctatagcttatatgaatataatt-tgaccttattttatcttttg 6993832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 11393749 - 11393817
Alignment:
Q  104 ttattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataag 172  Q
    ||||| |||||||||  ||||||||||||||||  |||||||||| | ||||||  || ||||||||||    
T  11393749 ttattgtatcttttggtatagaaatagcttatacataagcacttaaatgataaatgtttatgctataag 11393817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 11410410 - 11410478
Alignment:
Q  104 ttattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataag 172  Q
    ||||| |||||||||  ||||||||||||||||  |||||||||| | ||||||  || ||||||||||    
T  11410410 ttattgtatcttttggtatagaaatagcttatacataagcacttaaatgataaatgtttatgctataag 11410478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 18179288 - 18179324
Alignment:
Q  57 atagcttataaaaccagcttatagcttatatgaaaat 93  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  18179288 atagcttatgaaagcagcttatagcttatatgaaaat 18179324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 136
Target Start/End: Original strand, 26143735 - 26143767
Alignment:
Q  104 ttattttatcttttgcgatagaaatagcttata 136  Q
    |||||||||||||||| ||||||||||||||||    
T  26143735 ttattttatcttttgctatagaaatagcttata 26143767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 29419915 - 29419847
Alignment:
Q  25 ttttatcatcttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaat 93  Q
    |||| ||| |||||||||||||||||||||| ||||| ||| ||| |||  |||||||  |||||||||    
T  29419915 ttttttcaacttatttccataaactctctaggatagcatatgaaaacagtctatagctcgtatgaaaat 29419847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 37292380 - 37292455
Alignment:
Q  42 cataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttg 118  Q
    ||||||||||| || ||||||||  ||| || || ||||||||||||||||| ||| | || |||||||||||||||    
T  37292380 cataaactctccaggatagcttaagaaaacaactaatagcttatatgaaaatagtt-ttactttattttatcttttg 37292455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 104 - 196
Target Start/End: Complemental strand, 32917202 - 32917107
Alignment:
Q  104 ttattttatcttttgcgatagaaatagcttataagtaagcacttataa---gataaactttaatgctataagcatttaattaagttgtttatccaa 196  Q
    |||||||||||||||| || |||||||||||||  |||||||||||||   ||||||| |  | |||||||||  |||||||||||||||||||||    
T  32917202 ttattttatcttttgctattgaaatagcttatacataagcacttataatatgataaacgtctacgctataagcgcttaattaagttgtttatccaa 32917107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 197
Target Start/End: Complemental strand, 5329022 - 5328857
Alignment:
Q  30 tcatcttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaata 129  Q
    ||||||||||| ||||||||||| |  ||| ||||  ||| |||||||||  |||||| ||||| ||| |||| |||||||||||||||  |||||||||    
T  5329022 tcatcttattttcataaactctccatgataacttacgaaaacagcttataa-ttatataaaaatggtt-tgactttattttatcttttgttatagaaata 5328925  T
Q  130 gcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaaa 197  Q
     |||| | |||||||||| || ||||| | || |||||||| |   ||||||||| ||||||| ||||    
T  5328924 acttaaacgtaagcacttttatgataatcatttatgctatatgtggttaattaagctgtttattcaaa 5328857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 136
Target Start/End: Original strand, 281873 - 281974
Alignment:
Q  34 cttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagctt 133  Q
    ||||||||||| | |||||||| ||||||||| ||  |||||||||||||||||||||| |    |||| |||||||||||||||  |||| ||||||||    
T  281873 cttatttccatgagctctctaggatagcttatgaacacagcttatagcttatatgaaaa-caagttgactttattttatcttttgttataggaatagctt 281971  T
Q  134 ata 136  Q
    |||    
T  281972 ata 281974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 195
Target Start/End: Original strand, 4003711 - 4003785
Alignment:
Q  121 atagaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatcca 195  Q
    ||||||||||||||||  ||||||||||||  |||||   | |||||||||||| ||||||||||||||||||||    
T  4003711 atagaaatagcttatacataagcacttatagcataaaaacttatgctataagcacttaattaagttgtttatcca 4003785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 191
Target Start/End: Original strand, 10452425 - 10452541
Alignment:
Q  74 cttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagc 173  Q
    |||||||||||||||||||| ||| |||  ||||||||| |||||  ||||||||||||||||  |||||||| ||| ||||  |  | ||||||||||     
T  10452425 cttatagcttatatgaaaatagtt-tgattttattttatattttgttatagaaatagcttatacataagcactgatatgatagccacttatgctataaga 10452523  T
Q  174 atttaattaagttgttta 191  Q
      ||||||||||||||||    
T  10452524 gcttaattaagttgttta 10452541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 197
Target Start/End: Complemental strand, 3155248 - 3155059
Alignment:
Q  8 ttatgacatgt--atcagcttttatcatcttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacatt 105  Q
    |||||||||||  || |||| || ||| ||||||||||||  ||||| || ||| ||||| |||  ||||||||| ||||||| |||  ||| |||| ||    
T  3155248 ttatgacatgtctataagctgttttcagcttatttccatag-ctctccaggatatcttatgaaaatagcttataggttatatggaaacagtt-tgacttt 3155151  T
Q  106 attttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaaa 197  Q
     ||||||||||||  | ||| ||||||||||  ||| || ||||| |||||||  | |||||||||||  |||| |||||||||||||||||    
T  3155150 gttttatcttttgtaaaagagatagcttatacataaccatttatatgataaacgcttatgctataagcgcttaaataagttgtttatccaaa 3155059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 24838763 - 24838827
Alignment:
Q  29 atcatcttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaat 93  Q
    ||||||||||||| |||| ||||| |  ||||||||| ||| |||||||||||||||||||||||    
T  24838763 atcatcttatttctataagctctccatgatagcttatgaaatcagcttatagcttatatgaaaat 24838827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 137
Target Start/End: Complemental strand, 2117448 - 2117346
Alignment:
Q  34 cttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagctt 133  Q
    |||||||| |||| |||||||| ||| ||||| ||| || ||||||| |||||||||||| ||| |||| || ||||||| ||||  ||||||||||| |    
T  2117448 cttatttcaataagctctctaggataacttatgaaaacaacttatagattatatgaaaatagtt-tgactttgttttatcctttgtcatagaaatagcgt 2117350  T
Q  134 ataa 137  Q
    ||||    
T  2117349 ataa 2117346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 195
Target Start/End: Original strand, 9833160 - 9833282
Alignment:
Q  72 agcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataa 171  Q
    ||||||| ||||||| |||||  ||| |||| ||||||||| | |||  ||||||||| ||||||   ||||||||||| |||||||  | ||| |||||    
T  9833160 agcttattgcttataagaaaacagtt-tgactttattttatttattgtaatagaaatatcttatagagaagcacttatatgataaacgcttatgttataa 9833258  T
Q  172 gcatttaattaagttgtttatcca 195  Q
     || ||||||||||||||||||||    
T  9833259 acacttaattaagttgtttatcca 9833282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 136
Target Start/End: Original strand, 29274281 - 29274355
Alignment:
Q  61 cttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttata 136  Q
    ||||| ||| ||| ||||||||||||||||||   || |||| |||||||||||||||| ||||||||||||||||    
T  29274281 cttatgaaaacagtttatagcttatatgaaaacaatt-tgactttattttatcttttgctatagaaatagcttata 29274355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 30522465 - 30522524
Alignment:
Q  34 cttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaat 93  Q
    ||||||| ||||||||||| || |||||| |||||| ||| |||||||||||||||||||    
T  30522465 cttatttgcataaactctccaggatagctaataaaagcagattatagcttatatgaaaat 30522524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 134
Target Start/End: Complemental strand, 1403018 - 1402942
Alignment:
Q  57 atagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagctta 134  Q
    ||||||||| ||| ||  ||||||||||||||||||| ||| | || |||||||||||||||  ||||||||||||||    
T  1403018 atagcttatgaaaacaatttatagcttatatgaaaatagtt-taactttattttatcttttgttatagaaatagctta 1402942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 197
Target Start/End: Original strand, 33068624 - 33068748
Alignment:
Q  72 agcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataa 171  Q
    |||||||| ||||| ||||||  ||| ||| ||||||||||||||||  ||||||||| ||||||  |||||| ||||  ||||| |  | |||||||||    
T  33068624 agcttatatcttatttgaaaacagtt-tgatattattttatcttttgttatagaaataacttatacataagcatttatttgataagcgcttatgctataa 33068722  T
Q  172 gcatttaattaagttgtttatccaaa 197  Q
     || ||||||||| |||| |||||||    
T  33068723 acacttaattaagctgttcatccaaa 33068748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 2027455 - 2027530
Alignment:
Q  58 tagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagctta 134  Q
    |||||||| | | |||||||||| |||||||||||| ||| |||| |||||||||||||||  ||| ||||||||||    
T  2027455 tagcttatgagaacagcttataggttatatgaaaatagtt-tgactttattttatcttttgttataaaaatagctta 2027530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 198
Target Start/End: Original strand, 4247237 - 4247272
Alignment:
Q  163 atgctataagcatttaattaagttgtttatccaaat 198  Q
    |||||||||||| |||||||||||||||||||||||    
T  4247237 atgctataagcacttaattaagttgtttatccaaat 4247272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 156
Target Start/End: Complemental strand, 22742384 - 22742290
Alignment:
Q  61 cttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataa 156  Q
    |||||||||  ||||||||||||||||||||| |  | |||| |||||||||| ||||  ||| ||||||||||||  |||| ||||||| |||||    
T  22742384 cttataaaaatagcttatagcttatatgaaaa-caatttgactttattttatcctttgttatacaaatagcttatagataagaacttatacgataa 22742290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 92
Target Start/End: Complemental strand, 1275194 - 1275136
Alignment:
Q  34 cttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaa 92  Q
    ||||||||||||| ||||| || ||| | ||| ||| ||||||||||||||||||||||    
T  1275194 cttatttccataagctctccaggataacatatgaaaacagcttatagcttatatgaaaa 1275136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 172
Target Start/End: Complemental strand, 2514707 - 2514610
Alignment:
Q  74 cttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataag 172  Q
    ||||||||| |||| ||| | ||| |||| ||||||||||||||   ||||||||||||||||  |||||||||| | ||||| | || ||||||||||    
T  2514707 cttatagctcatataaaattagtt-tgactttattttatcttttattatagaaatagcttatacataagcacttacatgataagcatttatgctataag 2514610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 197
Target Start/End: Original strand, 4046209 - 4046239
Alignment:
Q  167 tataagcatttaattaagttgtttatccaaa 197  Q
    |||||||||||||||||||||||||||||||    
T  4046209 tataagcatttaattaagttgtttatccaaa 4046239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 149
Target Start/End: Complemental strand, 264347 - 264302
Alignment:
Q  104 ttattttatcttttgcgatagaaatagcttataagtaagcacttat 149  Q
    ||||||||||||||||  |||||||||||||||  |||||||||||    
T  264347 ttattttatcttttgctttagaaatagcttatatataagcacttat 264302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 197
Target Start/End: Complemental strand, 14492344 - 14492185
Alignment:
Q  37 atttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttata 136  Q
    ||||||| ||||||||||| ||| ||||| ||| ||||||||||||| ||| |||| |  | |||| | |||||||||||||  ||| |||||| |||||    
T  14492344 atttccacaaactctctaggataacttatgaaaacagcttatagcttgtatcaaaa-caatttgacttcattttatcttttggtata-aaataggttata 14492247  T
Q  137 agtaagcacttataa-gataaactttaatgctataagcatttaattaagttgtttatccaaa 197  Q
       |||||||||||| |||| || || |||||| ||||| | ||||||| | || |||||||    
T  14492246 caaaagcacttataatgatatacatttatgctacaagcaataaattaagctattcatccaaa 14492185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 25426215 - 25426158
Alignment:
Q  34 cttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaa 91  Q
    |||||||| ||||| |||| || |||||||||||||  ||||||||||||| ||||||    
T  25426215 cttatttctataaattctccaggatagcttataaaaatagcttatagcttacatgaaa 25426158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 3525187 - 3525143
Alignment:
Q  40 tccataaactctctagtatagcttataaaaccagcttatagctta 84  Q
    ||||||| |||||||| ||||| ||||||| ||||||||||||||    
T  3525187 tccataagctctctaggatagcatataaaaacagcttatagctta 3525143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 119
Target Start/End: Original strand, 3785734 - 3785809
Alignment:
Q  43 ataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgc 119  Q
    |||| ||||| || |||||||| |||| |||||||||||||||| |||||  ||| | || ||||||||||||||||    
T  3785734 ataagctctccagaatagcttacaaaaacagcttatagcttatacgaaaacagtt-taactttattttatcttttgc 3785809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 32386213 - 32386261
Alignment:
Q  124 gaaatagcttataagtaagcacttataagataaactttaatgctataag 172  Q
    |||||||||||||  |||||||||||| |||||||||| || |||||||    
T  32386213 gaaatagcttatacataagcacttatatgataaacttttatactataag 32386261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 197
Target Start/End: Original strand, 8422856 - 8423024
Alignment:
Q  26 tttatcatcttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgataga 125  Q
    ||||||| ||||||| ||||||||||| |  |||| || | ||| || |||||||||||||||||||   |   ||| ||||||||||||||   ||| |    
T  8422856 tttatcagcttatttgcataaactctccaagatagattgtgaaaacaacttatagcttatatgaaaacaat---gactttattttatctttttttataaa 8422952  T
Q  126 aatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaaa 197  Q
    |||||||||||  ||||||| |||| |||| |   | ||||||||| || ||||||||||||||||||||||    
T  8422953 aatagcttatacataagcacatatatgatacatgattatgctataaacacttaattaagttgtttatccaaa 8423024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 156
Target Start/End: Original strand, 54325063 - 54325183
Alignment:
Q  35 ttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagctta 134  Q
    |||| ||||||||||||| |  ||||||| | |||  |||||||||||||||||||||  ||| |||| |||||||||||||||  |||||||||| |||    
T  54325063 ttatctccataaactctccatgatagcttttgaaaatagcttatagcttatatgaaaacagtt-tgactttattttatcttttgtaatagaaatagttta 54325161  T
Q  135 taagtaagcacttataagataa 156  Q
    ||   ||||||||||| |||||    
T  54325162 tacacaagcacttatatgataa 54325183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 117
Target Start/End: Original strand, 30581699 - 30581784
Alignment:
Q  31 catcttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatctttt 117  Q
    |||||||||||||||||||||| |  ||| ||||| ||| |||||||||||||||| |||||| ||| |||| | ||||||||||||    
T  30581699 catcttatttccataaactctccaagataacttattaaaacagcttatagcttatacgaaaatagtt-tgacttcattttatctttt 30581784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 184
Target Start/End: Complemental strand, 49219184 - 49219035
Alignment:
Q  34 cttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagctt 133  Q
    ||||||||||||| |||| ||  |||| |||| ||| || ||||||||||||||||||||  || |||| ||||||||| |||||  ||||||||| |||    
T  49219184 cttatttccataatctctttaagatagtttatgaaaacaacttatagcttatatgaaaataatt-tgactttattttatattttgttatagaaataactt 49219086  T
Q  134 ataagtaagcacttataagataaactttaatgctataagcatttaattaag 184  Q
    |||  ||| |||| ||| ||||| |   ||||||||||||| |||| ||||    
T  49219085 atacctaaccactcatatgataagcgccaatgctataagcacttaactaag 49219035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 197
Target Start/End: Complemental strand, 24444060 - 24443921
Alignment:
Q  57 atagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataa 156  Q
    ||||||||| ||| || |||||||||||||||||||| ||| |||  ||||||||| |||||   ||||||| |||||||  |||| ||||||| |||||    
T  24444060 atagcttatgaaaacaacttatagcttatatgaaaattgtt-tgaatttattttatattttgttgtagaaatcgcttatacataagaacttatatgataa 24443962  T
Q  157 actttaatgctataagcatttaattaagttgtttatccaaa 197  Q
        | |||||||||||  ||||| ||||||| ||||||||    
T  24443961 gtgcttatgctataagcgcttaataaagttgtgtatccaaa 24443921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 130
Target Start/End: Complemental strand, 24929538 - 24929443
Alignment:
Q  34 cttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatag 130  Q
    ||||||||||||| |||||||||| || |||| ||| || |||||||||| ||||||||  |||  ||| |||||||||||||||  ||||||||||    
T  24929538 cttatttccataagctctctagtagagtttatgaaaacaacttatagcttttatgaaaacagtt-agactttattttatcttttgttatagaaatag 24929443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 189
Target Start/End: Complemental strand, 36734890 - 36734784
Alignment:
Q  82 ttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaatt 181  Q
    |||||||||||| ||| |||| |||||||| ||||||  ||||||| || |||||  |||||||||||| ||||||  |  ||| ||||||| |||||||    
T  36734890 ttatatgaaaatagtt-tgactttattttaccttttgttatagaaagagattatacataagcacttatatgataaaggtatatgttataagcttttaatt 36734792  T
Q  182 aagttgtt 189  Q
    ||||||||    
T  36734791 aagttgtt 36734784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 195
Target Start/End: Original strand, 40709475 - 40709565
Alignment:
Q  105 tattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatcca 195  Q
    ||||||||||||||  ||||||| ||||||||| ||||||||||||   |||    | ||| |||||||| ||||||||||||||||||||    
T  40709475 tattttatcttttgttatagaaacagcttataaataagcacttatatattaagtggttatgatataagcacttaattaagttgtttatcca 40709565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 7694035 - 7694087
Alignment:
Q  34 cttatttccataaactctctagtatagcttataaaaccagcttatagcttata 86  Q
    ||||||||||||||||||| || ||| ||||| ||| ||||||||||||||||    
T  7694035 cttatttccataaactctccaggataacttatgaaaacagcttatagcttata 7694087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 32066436 - 32066491
Alignment:
Q  34 cttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaa 90  Q
    ||||| ||||||||||| |||| ||||||||||||| |||||||||||| |||||||    
T  32066436 cttatgtccataaactc-ctaggatagcttataaaaacagcttatagctcatatgaa 32066491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 158
Target Start/End: Complemental strand, 4191712 - 4191661
Alignment:
Q  107 ttttatcttttgcgatagaaatagcttataagtaagcacttataagataaac 158  Q
    ||||||||||||  ||||||||||||||||  |||||||||||| |||||||    
T  4191712 ttttatcttttgttatagaaatagcttatacataagcacttatatgataaac 4191661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 156
Target Start/End: Complemental strand, 44319979 - 44319874
Alignment:
Q  49 tctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcactta 148  Q
    ||||||| ||||||||| |||  ||||| |||||||||||||||  |||| ||| ||||||||||||||   |||||||||| |||||  | ||||||||    
T  44319979 tctctaggatagcttatcaaaatagcttgtagcttatatgaaaacagttc-gactttattttatctttt-ttatagaaatagtttatacatgagcactta 44319882  T
Q  149 taagataa 156  Q
    || |||||    
T  44319881 tatgataa 44319874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 130
Target Start/End: Complemental strand, 4071905 - 4071832
Alignment:
Q  56 tatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatag 130  Q
    |||||||||| | | || ||||||||||||||||||||  || |||| |||||||||||||||  ||||||||||    
T  4071905 tatagcttatcataacaacttatagcttatatgaaaataatt-tgactttattttatcttttgttatagaaatag 4071832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 136
Target Start/End: Original strand, 19040140 - 19040241
Alignment:
Q  34 cttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagctt 133  Q
    |||||||||| |||||||||| ||| ||||||   | ||| ||||||||| ||||||| |  || |||| |||||||||||||| | | |||||||||||    
T  19040140 cttatttccaaaaactctctaatatggcttatgttagcaggttatagcttttatgaaattattt-tgactttattttatctttttctaaagaaatagctt 19040238  T
Q  134 ata 136  Q
    |||    
T  19040239 ata 19040241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 155
Target Start/End: Complemental strand, 21194001 - 21193923
Alignment:
Q  77 atagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagata 155  Q
    |||||||||||||||   ||| |||| |||||||||||||| | ||| ||||||||||||  ||| ||| |||||||||    
T  21194001 atagcttatatgaaatcagttttgactttattttatcttttactataaaaatagcttatacataatcacatataagata 21193923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 148
Target Start/End: Original strand, 21593078 - 21593149
Alignment:
Q  75 ttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcactta 148  Q
    ||||||||||||||||||| |||  ||| ||||||||||||| |  |||||||||| |||||  ||||||||||    
T  21593078 ttatagcttatatgaaaatagtt--gactttattttatctttagttatagaaatagtttatacataagcactta 21593149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 30207596 - 30207654
Alignment:
Q  34 cttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaa 92  Q
    ||||||||||||| |||||||   |||||||| ||| || |||||||||||||||||||    
T  30207596 cttatttccataatctctctaaggtagcttatgaaaacaacttatagcttatatgaaaa 30207654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 92
Target Start/End: Complemental strand, 36048578 - 36048520
Alignment:
Q  34 cttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaa 92  Q
    ||||||||||||| |||||||  ||||||| | |||  |||||||||||||||||||||    
T  36048578 cttatttccataagctctctaagatagcttttgaaaatagcttatagcttatatgaaaa 36048520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 199
Target Start/End: Original strand, 43372017 - 43372158
Alignment:
Q  57 atagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataa 156  Q
    ||||||||| ||| ||| ||||||||||||| ||||  ||| ||||  ||||||||||||||  ||| ||||| |||||   ||| |||||||| | |||    
T  43372017 atagcttatgaaatcagtttatagcttatataaaaacagtt-tgactgtattttatcttttgttataaaaataccttatgtttaaacacttatatggtaa 43372115  T
Q  157 actttaatgctataagcatttaattaagttgtttatccaaatt 199  Q
    |   | ||||||||| | |||| |||| |||||||||||||||    
T  43372116 atgcttatgctataatcgtttacttaaattgtttatccaaatt 43372158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 190
Target Start/End: Original strand, 55437354 - 55437464
Alignment:
Q  77 atagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagcatt 176  Q
    |||||||||||||||||  || |||| ||||||||| || |   ||||||||||||||||  ||| | |||||| ||||| |  | || |||||||||||    
T  55437354 atagcttatatgaaaataatt-tgactttattttatattgtt--atagaaatagcttatagataatcgcttatatgataaccaattatactataagcatt 55437450  T
Q  177 taattaagttgttt 190  Q
    ||||||||||||||    
T  55437451 taattaagttgttt 55437464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 197
Target Start/End: Complemental strand, 486057 - 485964
Alignment:
Q  104 ttattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaaa 197  Q
    |||||||||||||||   |||||||||| ||||  ||||||||| || ||||| |  | |||||||||||  |||||||||| ||| |||||||    
T  486057 ttattttatcttttgttttagaaatagcatatacataagcacttttatgataagcgcttatgctataagcgcttaattaagtagttcatccaaa 485964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 150
Target Start/End: Complemental strand, 8130192 - 8130104
Alignment:
Q  61 cttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcacttata 150  Q
    ||||| ||| ||| |||||||||||||||||||  || |||| |||| ||||||||||  ||||||| | || ||| |||||||||||||    
T  8130192 cttatgaaaacagtttatagcttatatgaaaataatt-tgactttatgttatcttttgttatagaaagaactcatacgtaagcacttata 8130104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 14987071 - 14987141
Alignment:
Q  125 aaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaaa 197  Q
    |||| ||||||||||||||| ||||||||||  |||  || ||| |||| ||||| |||||||||||||||||    
T  14987071 aaatggcttataagtaagcaattataagatagcctt--attctaaaagcgtttaactaagttgtttatccaaa 14987141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 18512548 - 18512605
Alignment:
Q  139 taagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaa 196  Q
    ||||| |||||| ||||||  || |||||||||||| |||||||||||| ||||||||    
T  18512548 taagctcttatatgataaatgtttatgctataagcacttaattaagttgcttatccaa 18512605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 21731751 - 21731792
Alignment:
Q  108 tttatcttttgcgatagaaatagcttataagtaagcacttat 149  Q
    |||||||||||| ||| |||||||||||| ||||||||||||    
T  21731751 tttatcttttgctataaaaatagcttatacgtaagcacttat 21731792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 196
Target Start/End: Original strand, 22684605 - 22684702
Alignment:
Q  99 tgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaa 196  Q
    |||| |||||||| | ||||  ||||||||||||||||   ||||| ||||| ||||| |    ||| |||||||| |||||||||||||||||||||    
T  22684605 tgactttattttaccgtttgttatagaaatagcttatacagaagcatttatatgataagcgcatatggtataagcaattaattaagttgtttatccaa 22684702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 156
Target Start/End: Original strand, 24160545 - 24160641
Alignment:
Q  59 agcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataa 156  Q
    ||||||| ||| || ||||||||||| |||||||| ||| |||  |||| ||||||||||  ||||||| |||||||   |||||||||||| |||||    
T  24160545 agcttatgaaaacaacttatagcttacatgaaaatagtt-tgaatttatattatcttttgttatagaaaaagcttatttataagcacttatatgataa 24160641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 29373953 - 29374013
Alignment:
Q  75 ttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttata 136  Q
    |||||||||||||||| | | || ||||||||||||||||| ||  ||||||||||||||||    
T  29373953 ttatagcttatatgaata-cattttgacattattttatcttctgttatagaaatagcttata 29374013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 192
Target Start/End: Complemental strand, 30024704 - 30024588
Alignment:
Q  75 ttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagca 174  Q
    ||||||||||||||||||   || | || |||||||||||||||  ||||||||| |||||   |||| ||||||| |||||||  |  | |||||| ||    
T  30024704 ttatagcttatatgaaaacaatttt-actttattttatcttttgttatagaaataacttatgcataagtacttatatgataaacgcttctactataaaca 30024606  T
Q  175 tttaattaagttgtttat 192  Q
     |||||||||||||||||    
T  30024605 cttaattaagttgtttat 30024588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 118
Target Start/End: Complemental strand, 49086027 - 49085951
Alignment:
Q  41 ccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttg 118  Q
    |||||| |||||||   |||||||| ||| || |||||| ||| ||||||||| ||| ||||||||||||||||||||    
T  49086027 ccataagctctctaaggtagcttatgaaaacaacttataacttgtatgaaaatagtt-tgacattattttatcttttg 49085951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 136
Target Start/End: Complemental strand, 3155579 - 3155547
Alignment:
Q  104 ttattttatcttttgcgatagaaatagcttata 136  Q
    |||||||||||||||| ||||||||||||||||    
T  3155579 ttattttatcttttgctatagaaatagcttata 3155547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 197
Target Start/End: Original strand, 4663857 - 4663889
Alignment:
Q  165 gctataagcatttaattaagttgtttatccaaa 197  Q
    ||||||||| |||||||||||||||||||||||    
T  4663857 gctataagcttttaattaagttgtttatccaaa 4663889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 4798653 - 4798697
Alignment:
Q  104 ttattttatcttttgcgatagaaatagcttataagtaagcactta 148  Q
    |||||||||||||||  ||||||||||||||||  ||||||||||    
T  4798653 ttattttatcttttgatatagaaatagcttatacataagcactta 4798697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 19394788 - 19394820
Alignment:
Q  34 cttatttccataaactctctagtatagcttata 66  Q
    ||||||||||||| |||||||||||||||||||    
T  19394788 cttatttccataagctctctagtatagcttata 19394820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 145
Target Start/End: Original strand, 30338616 - 30338727
Alignment:
Q  34 cttatttccataaactctctagtatagcttat-aaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagct 132  Q
    ||||||| ||||||||||| |  | ||||||| |||| ||| ||||||||||||||||||  ||| | || ||||| |||||||||  |||||||||| |    
T  30338616 cttattttcataaactctccaagagagcttatgaaaaacagtttatagcttatatgaaaacagtt-taactttattctatcttttgttatagaaatagtt 30338714  T
Q  133 tataagtaagcac 145  Q
    ||||  |||||||    
T  30338715 tatacataagcac 30338727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 47970292 - 47970248
Alignment:
Q  106 attttatcttttgcgatagaaatagcttataagtaagcacttata 150  Q
    |||||||||||||  ||||||||||||||||  ||||||||||||    
T  47970292 attttatcttttgttatagaaatagcttatacataagcacttata 47970248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 157
Target Start/End: Original strand, 51555954 - 51556014
Alignment:
Q  97 tctgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataaa 157  Q
    |||||| |||||||||||||||  |||  |||||||||||  |||||||||||| ||||||    
T  51555954 tctgactttattttatcttttgttataataatagcttatacataagcacttatatgataaa 51556014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 197
Target Start/End: Complemental strand, 27598 - 27459
Alignment:
Q  57 atagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataa 156  Q
    |||| |||| ||| || ||||||| |||||||||||   || |||| |||||||||||| ||  ||||||||| ||||||  |||||||||| | |||||    
T  27598 atagtttatgaaaacaacttatagtttatatgaaaacaatt-tgactttattttatcttctgttatagaaataacttatacataagcacttacatgataa 27500  T
Q  157 actttaatgctataagcatttaattaagttgtttatccaaa 197  Q
        | ||||||||||| |||| ||||||||||||||||||    
T  27499 gagcttatgctataagcgtttatttaagttgtttatccaaa 27459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 183
Target Start/End: Original strand, 63379 - 63458
Alignment:
Q  104 ttattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaa 183  Q
    |||||||||||||||  ||| |||||||||||||  ||||||||||| |||||||   ||||||||| ||| ||||||||    
T  63379 ttattttatcttttgttataaaaatagcttataaacaagcacttatatgataaacaccaatgctatacgcacttaattaa 63458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 197
Target Start/End: Original strand, 6561 - 6684
Alignment:
Q  72 agcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataa 171  Q
    |||||||||||||||||||||| ||| |||| ||||||||| || ||| ||||||| ||| |||   |||| | ||||| || || |  ||||||||||     
T  6561 agcttatagcttatatgaaaatagtt-tgactttattttattttatgctatagaaacagc-tatgcataagtatttatatgagaagcactaatgctatag 6658  T
Q  172 gcatttaattaagttgtttatccaaa 197  Q
     | |||||||||||||||||||||||    
T  6659 acgtttaattaagttgtttatccaaa 6684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 197
Target Start/End: Original strand, 13581 - 13704
Alignment:
Q  72 agcttatagcttatatgaaaatcgttctgacattattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataa 171  Q
    |||||||||||||||||||||| ||| |||| ||||||||| || ||| ||||||| ||| |||   |||| | ||||| || || |  ||||||||||     
T  13581 agcttatagcttatatgaaaatagtt-tgactttattttattttatgctatagaaacagc-tatgcataagtatttatatgagaagcactaatgctatag 13678  T
Q  172 gcatttaattaagttgtttatccaaa 197  Q
     | |||||||||||||||||||||||    
T  13679 acgtttaattaagttgtttatccaaa 13704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 193
Target Start/End: Complemental strand, 42592 - 42504
Alignment:
Q  105 tattttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatc 193  Q
    ||||||||||||||  ||||||||  ||||||  |||||||||||| ||||||  |   |||||||||  |||||||||||||||||||    
T  42592 tattttatcttttgttatagaaatgacttatacataagcacttatatgataaatgtgtctgctataagtgtttaattaagttgtttatc 42504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 150
Target Start/End: Original strand, 4246 - 4364
Alignment:
Q  32 atcttatttccataaactctctagtatagcttataaaaccagcttatagcttatatgaaaatcgttctgacattattttatct-tttgcgatagaaatag 130  Q
    ||||| ||||| ||| || ||||| ||||||||| ||| |||||||||| ||||||||||| || | |||| ||||||||||| |||   ||||||||||    
T  4246 atcttgtttccgtaagctttctagcatagcttattaaaacagcttatagtttatatgaaaa-cggtttgactttattttatctcttttttatagaaatag 4344  T
Q  131 cttataagtaagcacttata 150  Q
     |||||  ||||||| ||||    
T  4345 attatatataagcacatata 4364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 198
Target Start/End: Original strand, 34013 - 34100
Alignment:
Q  111 atcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaaat 198  Q
    ||||||||  ||||||||||||| ||  ||| |||||||| ||| |  | | |||||||||||  |||||||||||||||||||||||    
T  34013 atcttttgaaatagaaatagcttctacataatcacttatatgatcagatcttatgctataagctcttaattaagttgtttatccaaat 34100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 188
Target Start/End: Complemental strand, 4931 - 4864
Alignment:
Q  121 atagaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgt 188  Q
    ||||||||||||||||  || ||||||||| |||| || || |||||||||||  |||||||||||||    
T  4931 atagaaatagcttatatataggcacttatatgatagacatttatgctataagcgcttaattaagttgt 4864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 196
Target Start/End: Complemental strand, 5993 - 5903
Alignment:
Q  106 attttatcttttgcgatagaaatagcttataagtaagcacttataagataaactttaatgctataagcatttaattaagttgtttatccaa 196  Q
    |||||||||||||  || ||||| | |||||  ||| |||||||| ||||||  || ||||||||| || || ||||||||||||||||||    
T  5993 attttatcttttgttattgaaattgtttatacataaacacttatatgataaatgtttatgctataaacagttgattaagttgtttatccaa 5903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University