View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20569_high_4 (Length: 538)

Name: NF20569_high_4
Description: NF20569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20569_high_4
NF20569_high_4
[»] chr8 (12 HSPs)
chr8 (128-456)||(9624198-9624544)
chr8 (19-76)||(9624089-9624146)
chr8 (166-315)||(22756346-22756498)
chr8 (167-291)||(54189-54315)
chr8 (166-324)||(16595076-16595236)
chr8 (166-315)||(15001484-15001636)
chr8 (196-324)||(29610981-29611112)
chr8 (239-315)||(7591382-7591459)
chr8 (166-315)||(10932754-10932905)
chr8 (239-315)||(30501238-30501315)
chr8 (166-315)||(35225680-35225832)
chr8 (239-315)||(41548711-41548788)
[»] chr7 (2 HSPs)
chr7 (166-324)||(21408539-21408699)
chr7 (239-315)||(1363733-1363810)
[»] chr5 (4 HSPs)
chr5 (166-324)||(4689615-4689776)
chr5 (166-324)||(27838991-27839151)
chr5 (261-321)||(14011173-14011233)
chr5 (239-318)||(26180217-26180297)
[»] chr3 (4 HSPs)
chr3 (175-315)||(19906790-19906933)
chr3 (239-315)||(41682967-41683044)
chr3 (239-315)||(3867563-3867640)
chr3 (239-315)||(50386370-50386447)
[»] chr1 (8 HSPs)
chr1 (166-321)||(26733582-26733740)
chr1 (239-315)||(42512765-42512842)
chr1 (256-324)||(47242502-47242571)
chr1 (269-321)||(7146892-7146945)
chr1 (239-315)||(7837235-7837312)
chr1 (239-324)||(31574456-31574541)
chr1 (166-291)||(17887975-17888102)
chr1 (166-291)||(41967869-41967996)
[»] chr4 (10 HSPs)
chr4 (166-208)||(40792438-40792480)
chr4 (239-315)||(26083435-26083512)
chr4 (239-315)||(50178405-50178482)
chr4 (239-315)||(50729455-50729532)
chr4 (261-321)||(9807273-9807334)
chr4 (239-315)||(11056138-11056215)
chr4 (239-307)||(20517943-20518012)
chr4 (239-307)||(36497313-36497382)
chr4 (239-315)||(44640419-44640496)
chr4 (175-219)||(7554969-7555013)
[»] scaffold0025 (1 HSPs)
scaffold0025 (239-315)||(5365-5442)
[»] chr2 (4 HSPs)
chr2 (261-324)||(83385-83449)
chr2 (246-315)||(6896268-6896338)
chr2 (175-324)||(44284656-44284808)
chr2 (261-324)||(38623215-38623279)
[»] chr6 (7 HSPs)
chr6 (239-313)||(9614067-9614142)
chr6 (196-315)||(18597117-18597239)
chr6 (166-219)||(7396183-7396236)
chr6 (239-315)||(10485250-10485327)
chr6 (277-321)||(14925170-14925215)
chr6 (261-321)||(14925409-14925470)
chr6 (239-318)||(35004084-35004164)


Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 128 - 456
Target Start/End: Original strand, 9624198 - 9624544
Alignment:
Q  128 tttttatggtattgaataannnnnnngtcttatacaatttt-ttgtaatttagataacttgtgcatgaaacaaaaagttgtgttatggtttagcaagggt 226  Q
    |||||||||||||||||||       ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  9624198 tttttatggtattgaataatttttttgtcttatacaatttttttgtaatttagataacttgtgcatgaaacaaaaagttgtgttgtggtttagcaagggt 9624297  T
Q  227 cgaaaatttatgtttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaacaaacagtgtacaactgaagttgtcatgtcatgcc 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |    
T  9624298 cgaaaatttatgtttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaataaacagtgtacaactgaagttgtcatgtcatgtc 9624397  T
Q  327 atgttcttcannnnnnnagcagatcaaacgcacctaattgtatcat-------atttgacttatctcaaataattcatctttctctcaatttgttttctt 419  Q
    ||||||||||       |||||||||||||||||||||||||||||       |||||||||||||||||| ||||||||||||||||||||||||||||    
T  9624398 atgttcttcatttttttagcagatcaaacgcacctaattgtatcatatttttcatttgacttatctcaaatgattcatctttctctcaatttgttttctt 9624497  T
Q  420 ----------tcaatcgtgctttttaacatgatatagagttagaccg 456  Q
              |||||||||||||||||||||||||||||||||||||    
T  9624498 ttagttgggctcaatcgtgctttttaacatgatatagagttagaccg 9624544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 9624089 - 9624146
Alignment:
Q  19 catgaaggtatattctcctttagggtgtgtttgatttgttaaactacatgtatgtgat 76  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  9624089 catgaaggtgtattctcctttagggtgtgtttgatttgttaaactacatgtacgtgat 9624146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 166 - 315
Target Start/End: Complemental strand, 22756498 - 22756346
Alignment:
Q  166 tttttgtaatttagataacttgtgcatgaaacaaaaagttgtgttatggtttagcaagggtcgaaaatttatg--tttgtcatgtctcttgtctcccgtt 263  Q
    |||||||| |||||||||||||| | ||| ||||||||||||||| |||| ||   ||||   ||||||||||  |||||| ||||||||| |||   ||    
T  22756498 tttttgtattttagataacttgtacgtgatacaaaaagttgtgttgtggtataatgagggataaaaatttatgtttttgtcttgtctcttgcctcaaatt 22756399  T
Q  264 tgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 315  Q
    |||| | ||||||||||| ||||||||| |||||| |||| ||||| ||||||    
T  22756398 tgtcctatcccagaaacagttttacaaatcaaacattgtataactggagttgt 22756346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 167 - 291
Target Start/End: Original strand, 54189 - 54315
Alignment:
Q  167 ttttgtaatttagataacttgtgcatgaaacaaaaagttgtgttatggtttagcaagggtcgaaaatttatg--tttgtcatgtctcttgtctcccgttt 264  Q
    ||||||| ||| ||||||||||   ||  ||||||||||||| | ||||||||||| || | ||||||||||  ||||||||||| ||||| ||| | ||    
T  54189 ttttgtattttcgataacttgtatgtgggacaaaaagttgtgatgtggtttagcaaaggacaaaaatttatgtttttgtcatgtcccttgtgtccggatt 54288  T
Q  265 gtcttgtcccagaaacaattttacaaa 291  Q
    ||| |||| |||||||| |||||||||    
T  54289 gtcatgtctcagaaacagttttacaaa 54315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 166 - 324
Target Start/End: Complemental strand, 16595236 - 16595076
Alignment:
Q  166 tttttgtaatttagataacttgtgcatgaaacaaaaagttgtgttatggtttagcaagggtcgaaaatttatg--tttgtcatgtctcttgtctcccgtt 263  Q
    |||||||| |||||||||||||| | ||  ||||||||||||||| ||| ||||| |||| | ||| || |||  |||||| |||| |||| || | |||    
T  16595236 tttttgtattttagataacttgtacgtgggacaaaaagttgtgttgtggattagcgagggacaaaacttcatgtttttgtcctgtcccttgcctacagtt 16595137  T
Q  264 tgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgtcatgtcatg 324  Q
    |||  |||||||||||||| |||||||| |||||| | ||||||||  |||||| |||||||    
T  16595136 tgttctgtcccagaaacaa-tttacaaatcaaacaatatacaactggtgttgtcctgtcatg 16595076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 166 - 315
Target Start/End: Original strand, 15001484 - 15001636
Alignment:
Q  166 tttttgtaatttagataacttgtgcatgaaacaaaaagttgtgttatggtttagcaagggtcgaaaatttatgttt--gtcatgtctcttgtctcccgtt 263  Q
    |||| ||| |||||||||||||| | ||  ||||||||||||||| |||||| |  |||| | |||||||  ||||  ||  ||||| ||| |||| |||    
T  15001484 ttttggtattttagataacttgtacgtgggacaaaaagttgtgttgtggtttggtgagggacaaaaatttcagtttttgttctgtctattgcctccagtt 15001583  T
Q  264 tgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 315  Q
    |||| |||||| |||||| ||||||||| |||||| || ||||||||||||||    
T  15001584 tgtcctgtccctgaaacagttttacaaatcaaacactggacaactgaagttgt 15001636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 324
Target Start/End: Complemental strand, 29611112 - 29610981
Alignment:
Q  196 acaaaaagttgtgttatggtttagcaagggtcgaaaattt--atgtttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-c 292  Q
    ||||||||||||||| |||||| || |||| | |||||||   | |||||| |||| |||| |||| ||||||  |||||| |||||| ||||||||| |    
T  29611112 acaaaaagttgtgttgtggtttggcgagggacaaaaatttcagtttttgtcctgtcccttgcctccagtttgttctgtccctgaaacagttttacaaatc 29611013  T
Q  293 aaacagtgtacaactgaagttgtcatgtcatg 324  Q
    ||||| || ||||||||||||||  |||||||    
T  29611012 aaacattggacaactgaagttgttctgtcatg 29610981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 239 - 315
Target Start/End: Complemental strand, 7591459 - 7591382
Alignment:
Q  239 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 315  Q
    |||||| ||||||||| |||| ||||||| ||| || |||||| ||||||||| |||||| || ||||||||||||||    
T  7591459 tttgtcctgtctcttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacactggacaactgaagttgt 7591382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 315
Target Start/End: Original strand, 10932754 - 10932905
Alignment:
Q  166 tttttgtaatttagataacttgtgcatgaaacaaaaagttgtgttatggtttagcaagggtcgaaaattta-tgtttgtcatgtctcttgtctcccgttt 264  Q
    |||| ||| |||||| || |||| | || ||| |||||||||| | ||||||||  |||| | ||| |||| | ||| |||||||||||| |||   |||    
T  10932754 ttttggtattttagacaaattgtacgtggaactaaaagttgtgatgtggtttagtgagggacaaaattttagtttttatcatgtctcttgcctctacttt 10932853  T
Q  265 gtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 315  Q
    ||||||||||| ||||||||||| ||| ||||||   |||||||||||||||    
T  10932854 gtcttgtcccataaacaattttataaatcaaacaccatacaactgaagttgt 10932905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 315
Target Start/End: Original strand, 30501238 - 30501315
Alignment:
Q  239 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 315  Q
    |||||| |||| |||| |||| ||||||||||| || |||||| ||||||||| |||||| ||  |||||||||||||    
T  30501238 tttgtcctgtcccttgcctccagtttgtcttgtacctgaaacagttttacaaatcaaacactgggcaactgaagttgt 30501315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 315
Target Start/End: Original strand, 35225680 - 35225832
Alignment:
Q  166 tttttgtaatttagataacttgtgcatgaaacaaaaagttgtgttatggtttagcaagggtcgaaaatt--tatgtttgtcatgtctcttgtctcccgtt 263  Q
    |||||||| |||||| ||||||| | ||  ||||||||||||| | |||||| || |||| | ||||||    | |||||| |||| |||| |||| |||    
T  35225680 tttttgtattttagacaacttgtacttgtgacaaaaagttgtgatgtggtttggcgagggacaaaaattgcagtttttgtcctgtcccttgcctccagtt 35225779  T
Q  264 tgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 315  Q
    |||| |||||| |||||  ||||||||| |||||| || ||||||| ||||||    
T  35225780 tgtcctgtccctgaaactgttttacaaaccaaacactggacaactggagttgt 35225832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 315
Target Start/End: Original strand, 41548711 - 41548788
Alignment:
Q  239 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 315  Q
    |||||| ||||||||| |||| ||||||| |||  | |||||| ||||||||| |||||| || ||||||||||||||    
T  41548711 tttgtcctgtctcttgcctccagtttgtcatgtatctgaaacagttttacaaatcaaacactggacaactgaagttgt 41548788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 166 - 324
Target Start/End: Complemental strand, 21408699 - 21408539
Alignment:
Q  166 tttttgtaatttagataacttgtgcatgaaacaaaaagttgtgttatggtttagcaagggtcgaa-aatttatgtttgtcatgtctcttgtctcccgttt 264  Q
    |||||||| |||||||||||||| ||||||| |||||||| |||| |||||||   |||| | ||   ||| | ||||||||||| |||| |||| ||||    
T  21408699 tttttgtattttagataacttgtacatgaaataaaaagttatgttgtggtttaatgagggacaaatgttttgtctttgtcatgtcccttgcctccagttt 21408600  T
Q  265 gtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgtcatgtcatg 324  Q
    || |||||||| |||||  |||||||| |||| | |||||||||  || ||||||||||||    
T  21408599 gtgttgtcccaaaaacagctttacaaatcaaatattgtacaactagagatgtcatgtcatg 21408539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 239 - 315
Target Start/End: Original strand, 1363733 - 1363810
Alignment:
Q  239 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 315  Q
    ||||||||||| |||| |||| ||||||| ||| |  |||||||||||||||| |||||| || ||||||||||||||    
T  1363733 tttgtcatgtcccttgcctccagtttgtcctgtacatgaaacaattttacaaatcaaacactggacaactgaagttgt 1363810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 166 - 324
Target Start/End: Complemental strand, 4689776 - 4689615
Alignment:
Q  166 tttttgtaatttagataacttgtgcatgaaacaaaaagttgtgttatggtttagcaagggtcgaaaatttatg--tttgtcatgtctcttgtctcccgtt 263  Q
    |||||||| |||||  ||||||| | ||  ||||||||||||||| |||||| |  |||| | ||||| | ||  |||||| |||| |||| |||| |||    
T  4689776 tttttgtattttaggcaacttgtacgtgggacaaaaagttgtgttgtggtttggtgagggacaaaaatatgtgtttttgtcctgtcccttgcctccagtt 4689677  T
Q  264 tgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgtcatgtcatg 324  Q
    |||||||| || |||||| ||||||||| |||||| || ||||||||||||||  |||||||    
T  4689676 tgtcttgtacctgaaacagttttacaaatcaaacactggacaactgaagttgttctgtcatg 4689615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 166 - 324
Target Start/End: Complemental strand, 27839151 - 27838991
Alignment:
Q  166 tttttgtaatttagataacttgtgcatgaaacaaaaagttgtgttatggtttagcaagggtcgaaaatttatg-tttgtcatgtctcttgtctcccgttt 264  Q
    |||| ||| |||||| ||||||| ||||| |||||||||||| ||||||||| |  |||| | |||||||||| ||| || ||||  ||| || | ||||    
T  27839151 ttttggtattttagacaacttgtacatgagacaaaaagttgttttatggtttggtgagggacaaaaatttatgttttatcctgtccattgccttcagttt 27839052  T
Q  265 gtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgtcatgtcatg 324  Q
    ||| ||| || |||||| ||||||||| |||||| || ||||||| ||||||  |||||||    
T  27839051 gtcatgtacctgaaacagttttacaaatcaaacactggacaactggagttgttctgtcatg 27838991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 321
Target Start/End: Complemental strand, 14011233 - 14011173
Alignment:
Q  261 gtttgtcttgtcccagaaacaattttacaaacaaacagtgtacaactgaagttgtcatgtc 321  Q
    ||||||| ||||||  ||||||||| |||| ||||||  ||||||||||||||||| ||||    
T  14011233 gtttgtcatgtccctaaaacaatttcacaatcaaacatagtacaactgaagttgtcctgtc 14011173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 239 - 318
Target Start/End: Complemental strand, 26180297 - 26180217
Alignment:
Q  239 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgtcat 318  Q
    |||||||| ||| ||||||||  ||| || ||||||| ||||| ||||||||| |||| | |||| |||||||||||||||    
T  26180297 tttgtcatatcttttgtctccaatttatcatgtcccaaaaacagttttacaaatcaaatattgtataactgaagttgtcat 26180217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 175 - 315
Target Start/End: Original strand, 19906790 - 19906933
Alignment:
Q  175 tttagataacttgtgcatgaaacaaaaagttgtgttatggtttagcaagggtcgaaaattt--atgtttgtcatgtctcttgtctcccgtttgtcttgtc 272  Q
    |||||| ||||||| | ||| ||||||||||||| | |||||| |  |||| | |||||||   | |||||| |||| |||| |||| ||||||  ||||    
T  19906790 tttagacaacttgtacgtgagacaaaaagttgtgctgtggtttggtgagggacaaaaatttcagtttttgtcctgtcccttgcctccagtttgttctgtc 19906889  T
Q  273 ccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 315  Q
    || |||||||||||||||| |||||| || ||||||||||||||    
T  19906890 cctgaaacaattttacaaatcaaacactggacaactgaagttgt 19906933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 239 - 315
Target Start/End: Complemental strand, 41683044 - 41682967
Alignment:
Q  239 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 315  Q
    |||||| ||||||||| |||| ||||||| ||| || |||||| ||||||||| |||||| || ||||||||||||||    
T  41683044 tttgtcttgtctcttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacactggacaactgaagttgt 41682967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 315
Target Start/End: Complemental strand, 3867640 - 3867563
Alignment:
Q  239 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 315  Q
    ||||||||||||||||||||| || |||  |||||| |||||| ||||||||| ||||||  | ||||||| ||||||    
T  3867640 tttgtcatgtctcttgtctccagtatgttctgtccctgaaacagttttacaaatcaaacaccggacaactggagttgt 3867563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 315
Target Start/End: Complemental strand, 50386447 - 50386370
Alignment:
Q  239 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 315  Q
    |||||||||||||||| |||| ||||||| ||| || |||||| ||||||||| |||||| |  ||||||| ||||||    
T  50386447 tttgtcatgtctcttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacactagacaactggagttgt 50386370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 166 - 321
Target Start/End: Original strand, 26733582 - 26733740
Alignment:
Q  166 tttttgtaatttagataacttgtgcatgaaacaaaaagttgtgttatggtttagcaagggtcgaaaattt--atgtttgtcatgtctcttgtctcccgtt 263  Q
    |||| ||| |||||| ||||||| |||||  |||||||||||||||||||||||   ||| | | |||||   | |||||||||||  | |||||  |||    
T  26733582 ttttggtattttagacaacttgtacatgaggcaaaaagttgtgttatggtttagtgggggacaagaatttcagtttttgtcatgtccatcgtctctagtt 26733681  T
Q  264 tgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgtcatgtc 321  Q
    ||||  |||| | ||||| ||||||||| ||||||  ||||||||||||||||||||||    
T  26733682 tgtccggtcctaaaaacagttttacaaatcaaacatcgtacaactgaagttgtcatgtc 26733740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 239 - 315
Target Start/End: Complemental strand, 42512842 - 42512765
Alignment:
Q  239 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 315  Q
    |||||| ||||||||| |||| ||||||| ||| || |||||| ||||||||| |||||| || ||||||||||||||    
T  42512842 tttgtcctgtctcttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacactggacaactgaagttgt 42512765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 47242571 - 47242502
Alignment:
Q  256 ctcccgtttgtcttgtcccagaaacaattttacaaac-aaacagtgtacaactgaagttgtcatgtcatg 324  Q
    |||| ||||||| ||||||| |||||||||||||||  |||||   ||||||||||||||||||||||||    
T  47242571 ctccagtttgtcatgtcccataaacaattttacaaattaaacaccatacaactgaagttgtcatgtcatg 47242502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 321
Target Start/End: Original strand, 7146892 - 7146945
Alignment:
Q  269 tgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgtcatgtc 321  Q
    ||||||| ||||||||||||||| |||||| | ||||||||||||||| |||||    
T  7146892 tgtcccaaaaacaattttacaaatcaaacactatacaactgaagttgttatgtc 7146945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 315
Target Start/End: Original strand, 7837235 - 7837312
Alignment:
Q  239 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 315  Q
    ||||||||||| |||| |||  ||||||| ||| || |||||| ||||||||| |||||| || ||||||||||||||    
T  7837235 tttgtcatgtcccttgcctctagtttgtcatgttcctgaaacagttttacaaatcaaacactgaacaactgaagttgt 7837312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 324
Target Start/End: Original strand, 31574456 - 31574541
Alignment:
Q  239 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaacaaacagtgtacaactgaagttgtcatgtcatg 324  Q
    |||||||||| |||| ||||| |||||| ||||    |||| | |||||||||  || | ||||||||||||||||||||||||||    
T  31574456 tttgtcatgtttcttatctccagtttgttttgtttttgaaatagttttacaaatcaaaattgtacaactgaagttgtcatgtcatg 31574541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 166 - 291
Target Start/End: Original strand, 17887975 - 17888102
Alignment:
Q  166 tttttgtaatttagataacttgtgcatgaaacaaaaagttgtgttatggtttagcaagggtcgaaaattt--atgtttgtcatgtctcttgtctcccgtt 263  Q
    |||| ||| |||||| ||||||| | ||  ||||||||||||||| |||||| || |||| | ||||| |   | |||||| |||| |||| |||| |||    
T  17887975 ttttggtattttagacaacttgtacgtgggacaaaaagttgtgttgtggtttggcgagggacaaaaatatgagtttttgtcctgtcccttgcctccagtt 17888074  T
Q  264 tgtcttgtcccagaaacaattttacaaa 291  Q
    |||||||| || |||||| |||||||||    
T  17888075 tgtcttgtacctgaaacagttttacaaa 17888102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 166 - 291
Target Start/End: Complemental strand, 41967996 - 41967869
Alignment:
Q  166 tttttgtaatttagataacttgtgcatgaaacaaaaagttgtgttatggtttagcaagggtcgaaaattt--atgtttgtcatgtctcttgtctcccgtt 263  Q
    |||| ||| |||||| ||||||| | ||| ||||||||||||||| |||||| | ||||| | ||||| |   | |||||| ||||||||| |||  |||    
T  41967996 ttttggtattttagacaacttgtacgtgagacaaaaagttgtgttgtggtttggtaagggacaaaaatatgagtttttgtcttgtctcttgcctctagtt 41967897  T
Q  264 tgtcttgtcccagaaacaattttacaaa 291  Q
    |||| ||| || |||||| |||||||||    
T  41967896 tgtcctgtacctgaaacagttttacaaa 41967869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 208
Target Start/End: Original strand, 40792438 - 40792480
Alignment:
Q  166 tttttgtaatttagataacttgtgcatgaaacaaaaagttgtg 208  Q
    |||||||| |||||||||||||| |||||||||||||||||||    
T  40792438 tttttgtattttagataacttgtacatgaaacaaaaagttgtg 40792480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 239 - 315
Target Start/End: Original strand, 26083435 - 26083512
Alignment:
Q  239 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 315  Q
    ||||||||||| |||| |||| ||||||  |||||| |||||||||||||||| |||||| |  ||||||||||||||    
T  26083435 tttgtcatgtcccttgcctccagtttgttctgtccctgaaacaattttacaaatcaaacactaaacaactgaagttgt 26083512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 239 - 315
Target Start/End: Complemental strand, 50178482 - 50178405
Alignment:
Q  239 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 315  Q
    |||||| ||||||||| |||| ||||||| ||| || |||||| ||||||||| |||||| || ||||||||||||||    
T  50178482 tttgtcctgtctcttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacactggacaactgaagttgt 50178405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 239 - 315
Target Start/End: Complemental strand, 50729532 - 50729455
Alignment:
Q  239 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 315  Q
    ||||||||||| |||| |||| ||||||  |||||| |||||| ||||||||| |||||| || ||||||||||||||    
T  50729532 tttgtcatgtcccttgcctccagtttgttctgtccctgaaacagttttacaaatcaaacactggacaactgaagttgt 50729455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 321
Target Start/End: Original strand, 9807273 - 9807334
Alignment:
Q  261 gtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgtcatgtc 321  Q
    ||||||||||| || |||||| ||||||||| |||||| || ||||||||||||||| ||||    
T  9807273 gtttgtcttgtacctgaaacagttttacaaatcaaacactggacaactgaagttgtcctgtc 9807334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 315
Target Start/End: Original strand, 11056138 - 11056215
Alignment:
Q  239 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 315  Q
    |||||| |||| |||| |||| ||||||| ||| || |||||| ||||||||| |||||| || ||||||||||||||    
T  11056138 tttgtcttgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacactggacaactgaagttgt 11056215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 307
Target Start/End: Complemental strand, 20518012 - 20517943
Alignment:
Q  239 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaact 307  Q
    |||||| ||||||||| |||| ||||||||||| || |||||| ||||||||| |||||| || ||||||    
T  20518012 tttgtcctgtctcttgcctccagtttgtcttgtacctgaaacagttttacaaatcaaacactgaacaact 20517943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 307
Target Start/End: Original strand, 36497313 - 36497382
Alignment:
Q  239 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaact 307  Q
    |||||| |||||||||||||| ||||||| ||| || |||||| ||||||||| |||||| || ||||||    
T  36497313 tttgtcctgtctcttgtctccagtttgtcctgtacctgaaacagttttacaaatcaaacactggacaact 36497382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 315
Target Start/End: Original strand, 44640419 - 44640496
Alignment:
Q  239 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 315  Q
    |||||| ||||||||| |||  ||||||| | | ||| ||||| ||||||||| |||||| |||||||||||||||||    
T  44640419 tttgtcttgtctcttgcctctagtttgtcattttccataaacagttttacaaatcaaacactgtacaactgaagttgt 44640496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 7555013 - 7554969
Alignment:
Q  175 tttagataacttgtgcatgaaacaaaaagttgtgttatggtttag 219  Q
    |||||| ||||||| | ||| ||||||||||||||||||||||||    
T  7555013 tttagacaacttgtacgtgagacaaaaagttgtgttatggtttag 7554969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 239 - 315
Target Start/End: Complemental strand, 5442 - 5365
Alignment:
Q  239 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 315  Q
    |||||| |||| |||| |||| ||||||||||| || |||||| ||||||||| |||||| || ||||||||||||||    
T  5442 tttgtcctgtcccttgcctccagtttgtcttgtacctgaaacagttttacaaatcaaacactggacaactgaagttgt 5365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 324
Target Start/End: Original strand, 83385 - 83449
Alignment:
Q  261 gtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgtcatgtcatg 324  Q
    ||||||| ||||||| ||||| ||||||||| |||||| ||| |||||||||||||| |||||||    
T  83385 gtttgtcatgtcccacaaacagttttacaaatcaaacactgtgcaactgaagttgtcttgtcatg 83449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 246 - 315
Target Start/End: Original strand, 6896268 - 6896338
Alignment:
Q  246 tgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 315  Q
    |||| |||| |||| |||||| ||||||| |||||| ||||||||| |||||| || ||||||||||||||    
T  6896268 tgtcccttgcctccagtttgttttgtccctgaaacagttttacaaatcaaacactggacaactgaagttgt 6896338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 324
Target Start/End: Original strand, 44284656 - 44284808
Alignment:
Q  175 tttagataacttgtgcatgaaacaaaaagttgtgttatggtttagcaagggtcgaaaattt--atgtttgtcatgtctcttgtctcccgtttgtcttgtc 272  Q
    |||||| ||||||| | ||| ||||||||||||| | ||||||||  |||| | ||||| |   | |||||| |||| |||| |||| |||||||||||     
T  44284656 tttagacaacttgtacgtgagacaaaaagttgtgctgtggtttagtgagggacaaaaatatgagtttttgtcttgtcccttgcctccagtttgtcttgta 44284755  T
Q  273 ccagaaacaattttacaaa-caaacagtgtacaactgaagttgtcatgtcatg 324  Q
    || |||||| ||||||||| |||||| || ||||||  ||||||  |||||||    
T  44284756 cctgaaacagttttacaaatcaaacactgaacaactctagttgttctgtcatg 44284808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 324
Target Start/End: Complemental strand, 38623279 - 38623215
Alignment:
Q  261 gtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgtcatgtcatg 324  Q
    ||||||| |||||| |||||| ||||||||| |||||| || | |||||||||||| ||||||||    
T  38623279 gtttgtcctgtccctgaaacagttttacaaatcaaacattggataactgaagttgttatgtcatg 38623215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 313
Target Start/End: Original strand, 9614067 - 9614142
Alignment:
Q  239 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagtt 313  Q
    ||||||||||| |||| |||| |||| || |||||  |||||| ||||||||| |||||| |||||||||||||||    
T  9614067 tttgtcatgtcccttgcctccagtttatcctgtccttgaaacagttttacaaatcaaacattgtacaactgaagtt 9614142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 315
Target Start/End: Complemental strand, 18597239 - 18597117
Alignment:
Q  196 acaaaaagttgtgttatggtttagcaagggtcgaaaatttatg--tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-c 292  Q
    ||||||||||||||| |||||| |  |||| | |||||||  |  ||||||||||| |||| |||| ||||||| | |||| |||||| ||||||||| |    
T  18597239 acaaaaagttgtgttgtggtttggtgagggacaaaaatttcagattttgtcatgtcccttgcctccggtttgtcatatccctgaaacagttttacaaatc 18597140  T
Q  293 aaacagtgtacaactgaagttgt 315  Q
    ||||| || ||||||||| ||||    
T  18597139 aaacactgaacaactgaaattgt 18597117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 7396236 - 7396183
Alignment:
Q  166 tttttgtaatttagataacttgtgcatgaaacaaaaagttgtgttatggtttag 219  Q
    |||||||| |||||||||||||| | ||| ||||||||||||||  ||||||||    
T  7396236 tttttgtattttagataacttgtacgtgagacaaaaagttgtgtagtggtttag 7396183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 315
Target Start/End: Original strand, 10485250 - 10485327
Alignment:
Q  239 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 315  Q
    |||||| ||||||||| |||| ||||||| ||| || |||| ||||||||||| |||||| || ||||||| ||||||    
T  10485250 tttgtcctgtctcttgcctccagtttgtcctgtacctgaaataattttacaaatcaaacactggacaactggagttgt 10485327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 321
Target Start/End: Complemental strand, 14925215 - 14925170
Alignment:
Q  277 aaacaattttacaaa-caaacagtgtacaactgaagttgtcatgtc 321  Q
    ||||||||||||||| |||||| || ||||||||||||||||||||    
T  14925215 aaacaattttacaaatcaaacactggacaactgaagttgtcatgtc 14925170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 321
Target Start/End: Complemental strand, 14925470 - 14925409
Alignment:
Q  261 gtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgtcatgtc 321  Q
    ||||||| ||| || |||||| ||||||||| |||||| || ||||||||||||||||||||    
T  14925470 gtttgtcctgtacctgaaacagttttacaaatcaaacactggacaactgaagttgtcatgtc 14925409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 239 - 318
Target Start/End: Complemental strand, 35004164 - 35004084
Alignment:
Q  239 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgtcat 318  Q
    |||||| |||||||||||||| |||| |||||||| | ||||  ||||||||| ||||||  | ||||||| |||||||||    
T  35004164 tttgtcttgtctcttgtctccggtttatcttgtcctataaaccgttttacaaatcaaacaccgcacaactggagttgtcat 35004084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University