View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20569_high_9 (Length: 442)
Name: NF20569_high_9
Description: NF20569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20569_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 16 - 432
Target Start/End: Complemental strand, 32765315 - 32764899
Alignment:
| Q |
16 |
caaattaagtttaagcatcaacttttatttattattgttgttatgcattaatttggttgcaaaaacgataacatgtcatgtctaaattgaaggagtaata |
115 |
Q |
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| T |
32765315 |
caaattaagtttaagcatcaacttttatttattattgttgttatgccttaatttggttgcaaaaacgataacatggcatgtctaaattgaaggagtaata |
32765216 |
T |
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| Q |
116 |
tggttgaaaccatttatttatactgtaaagtgattttctttattcggttcacatctaaatgtttggtattataattccttgaatatactttgttgaatgg |
215 |
Q |
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| T |
32765215 |
tggttgaaaccatttatttatactgtaaagtgattttctttattcggttcacatctaaatgtttggtattataattccttgaatatactttgttgaatgg |
32765116 |
T |
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| Q |
216 |
ttggttgcatgcaaatatatatagctctcctacattgatcttatatcataagaattgaaggaaaaataattgatcattcacattaaaattaatggaagtg |
315 |
Q |
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| T |
32765115 |
ttggttgcatgcaaatatatatagctctcctacattgatcttatatcataagaattgaaggaaaaataattgatcattcacattaaaattaatggaagtc |
32765016 |
T |
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| Q |
316 |
aaaagagtacaaactttagcttgtaatcagctaaaggagcttccaccacaattcattcgcttagcaaatgaaaggccagagaatacaaaggccatggagg |
415 |
Q |
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| T |
32765015 |
aaaagagtacaaactttagcttgtaatcagctaaaggagcttccaccacaattcattcgcttagcaaatgaaaggccagagaatacaaaggccatggagg |
32764916 |
T |
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| Q |
416 |
gtgttactgtgcctatg |
432 |
Q |
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| T |
32764915 |
gtgttactgtgcctatg |
32764899 |
T |
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