View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20569_low_11 (Length: 391)
Name: NF20569_low_11
Description: NF20569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20569_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 382
Target Start/End: Original strand, 31898372 - 31898750
Alignment:
| Q |
18 |
taagtgtgctaactgcttaatgttaggaagatattgtgtaggatgttgcatccaaatcct---------------ataaataagattcaatattgtactt |
102 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
31898372 |
taagtgtgctaattgcttaatgtttggaagat-ttgtgtaggatgttgcatccaaatcctgacactaggatttctatagataagattcaatattgtactt |
31898470 |
T |
|
| Q |
103 |
ggtctaagtatgaagcaaatggtagaccgaaaaaacatgaagaggaaaacaagaccatctctcatgtgactataaacgatgtagcaccgattctttaaat |
202 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
31898471 |
ggtttaagtatgaagcaaatggtagaccgaaaaaacatgaagaggaaaacaagaccatctctcatgtgactataaacgatgtagcatcgattctttagat |
31898570 |
T |
|
| Q |
203 |
tgaaggtgtgtctgatgtccgaaatgtatttgacgcgacaccagcacatatgataaatcattctgttcaaagagttgaaactgaaaagcaagagtctgtt |
302 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||| |||||| ||||||||| |||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
31898571 |
tgaaggtgtgtctgatgttcgaaatgtgtttgacgcaacaccaacacatatgacaaatcattttgttcaaaaagttgaaactgaaaagcaagagtctgtt |
31898670 |
T |
|
| Q |
303 |
acaccattgagtataaatacctttgatagaattattgtagaattaatattccatacaaatttcaataaagcatatagtat |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31898671 |
acaccattgagtataaatacctttgatagaattattgtagaattaatattccatacaaatttcaataaagcatatagtat |
31898750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 164
Target Start/End: Original strand, 31892951 - 31893033
Alignment:
| Q |
82 |
ataagattcaatattgtacttggtctaagtatgaagcaaatggtagaccgaaaaaacatgaagaggaaaacaagaccatctct |
164 |
Q |
| |
|
|||||||| || ||||| |||||| |||| ||| | ||||||||||||||||||||| |||||||||||| ||||| |||||| |
|
|
| T |
31892951 |
ataagattaaacattgttcttggtttaagcatggatcaaatggtagaccgaaaaaacgtgaagaggaaaagaagactatctct |
31893033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University