View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20569_low_13 (Length: 383)

Name: NF20569_low_13
Description: NF20569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20569_low_13
NF20569_low_13
[»] chr3 (3 HSPs)
chr3 (87-367)||(25914943-25915223)
chr3 (168-367)||(25901006-25901205)
chr3 (7-52)||(25914862-25914907)
[»] chr4 (11 HSPs)
chr4 (188-358)||(10553293-10553463)
chr4 (188-358)||(10571023-10571193)
chr4 (168-326)||(10464472-10464630)
chr4 (173-249)||(10482452-10482528)
chr4 (176-251)||(10475482-10475557)
chr4 (171-254)||(829343-829425)
chr4 (187-249)||(10468313-10468375)
chr4 (169-246)||(8437025-8437102)
chr4 (169-246)||(8447379-8447456)
chr4 (203-255)||(838005-838057)
chr4 (176-251)||(10484704-10484779)
[»] chr5 (1 HSPs)
chr5 (170-311)||(37935285-37935426)
[»] chr7 (1 HSPs)
chr7 (204-251)||(19645452-19645499)
[»] chr2 (1 HSPs)
chr2 (207-247)||(21021047-21021087)


Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 87 - 367
Target Start/End: Original strand, 25914943 - 25915223
Alignment:
Q  87 tttgatttcaaacaactgaatcggttaagcaatcccacaatctatttctagtattataaattaaaccaacaaggctgtaaagaagtaacataaattctat 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  25914943 tttgatttcaaacaactgaatcggttaagcaatcccacaatctatttctagtattataaattaaaccaacaaggctgtaaagaagtgacataaattctat 25915042  T
Q  187 caagtaatatgaaaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaatccttagcccacaaccaccgtactttattagtaatttgaa 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25915043 caagtaatatgaaaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaatccttagcccacaaccaccgtactttattagtaatttgaa 25915142  T
Q  287 ttggctcacctctattttctctgcatttatagataaatgctgtgtcgatttgatcatttgctaatatcaatgcatcacctt 367  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25915143 ttggctcgcctctattttctctgcatttatagataaatgctgtgtcgatttgatcatttgctaatatcaatgcatcacctt 25915223  T

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Target: chr3; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 168 - 367
Target Start/End: Original strand, 25901006 - 25901205
Alignment:
Q  168 gaagtaacataaattctatcaagtaatatgaaaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaatccttagcccacaaccaccgt 267  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  25901006 gaagtaacataaattctaacaagtaatatgagaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaatccttggcccacaaccactgt 25901105  T
Q  268 actttattagtaatttgaattggctcacctctattttctctgcatttatagataaatgctgtgtcgatttgatcatttgctaatatcaatgcatcacctt 367  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  25901106 actttattagtaatttgaattggctcgcctctattttctctgcatttatagataaatgctgcgtcgatttgatcatttgctaatatcaatgcatcacctt 25901205  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 25914862 - 25914907
Alignment:
Q  7 tcgaagaatatcaattgaatactacgtaacagcaatgaaattgaag 52  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  25914862 tcgaagaaaatcaattgaatactacgtaacagcaatgaaattgaag 25914907  T

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Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 188 - 358
Target Start/End: Original strand, 10553293 - 10553463
Alignment:
Q  188 aagtaatatgaaaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaatccttagcccacaaccaccgtactttattagtaatttgaat 287  Q
    |||||||||||  |||||||||||||||||| | ||||| |||||||||||||||||||||||| ||||| ||||||| || |||||||||||||  |||    
T  10553293 aagtaatatgaggaagagaaactcactttcatcgagttggaaccaaactttcaacgtaatccttggcccataaccaccatattttattagtaattctaat 10553392  T
Q  288 tggctcacctctattttctctgcatttatagataaatgctgtgtcgatttgatcatttgctaatatcaatg 358  Q
    | |||| |||||||| |||||||| ||||||||||||| ||||||| ||| ||||||||| ||||||||||    
T  10553393 ttgctcgcctctattgtctctgcaattatagataaatgttgtgtcgttttcatcatttgcaaatatcaatg 10553463  T

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Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 188 - 358
Target Start/End: Original strand, 10571023 - 10571193
Alignment:
Q  188 aagtaatatgaaaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaatccttagcccacaaccaccgtactttattagtaatttgaat 287  Q
    |||||||||||  |||||||||||||||||| | ||||| |||||||||||||||||||||||| ||||| ||||||| || |||||||||||||  |||    
T  10571023 aagtaatatgaggaagagaaactcactttcatcgagttggaaccaaactttcaacgtaatccttggcccataaccaccatattttattagtaattctaat 10571122  T
Q  288 tggctcacctctattttctctgcatttatagataaatgctgtgtcgatttgatcatttgctaatatcaatg 358  Q
    | |||| |||||||| |||||||| ||||||||||||| ||||||| ||| ||||||||| ||||||||||    
T  10571123 ttgctcgcctctattgtctctgcaattatagataaatgttgtgtcgttttcatcatttgcaaatatcaatg 10571193  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 168 - 326
Target Start/End: Complemental strand, 10464630 - 10464472
Alignment:
Q  168 gaagtaacataaattctatcaagtaatatgaaaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaatccttagcccacaaccaccgt 267  Q
    ||||||| |||||||||| |||||||||||   ||||||||||||||||||||  || ||||| | |||||||||||||||||| ||   ||||||   |    
T  10464630 gaagtaatataaattctaacaagtaatatgtggaagagaaactcactttcaacgtgtcgaaactagactttcaacgtaatccttggcatgcaaccataat 10464531  T
Q  268 actttattagtaatttgaattggctcacctctattttctctgcatttatagataaatgc 326  Q
    ||  || ||||||||  |||| ||||  ||||||| ||| ||| |||||||||||||||    
T  10464530 acagtactagtaattccaattcgctctactctattgtctttgcctttatagataaatgc 10464472  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 249
Target Start/End: Complemental strand, 10482528 - 10482452
Alignment:
Q  173 aacataaattctatcaagtaatatgaaaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaatcc 249  Q
    ||||||||||| | |||||||||||   |||||||||||||||||||  ||| ||||||||||||||||||||||||    
T  10482528 aacataaattcaaacaagtaatatgtggaagagaaactcactttcaatgagtcgaaaccaaactttcaacgtaatcc 10482452  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 251
Target Start/End: Complemental strand, 10475557 - 10475482
Alignment:
Q  176 ataaattctatcaagtaatatgaaaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaatcctt 251  Q
    |||||||| | |||||||||||   ||||||||||||||||||||  || ||||| ||||||||||||||||||||    
T  10475557 ataaattcaaacaagtaatatgtggaagagaaactcactttcaacgtgtcgaaactaaactttcaacgtaatcctt 10475482  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 254
Target Start/End: Original strand, 829343 - 829425
Alignment:
Q  171 gtaacataaattctatcaagtaatatgaaaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaatccttagc 254  Q
    ||||||||||||| | ||||| |||||  |||||||||||||||||||   | | |||||||||||||||| ||||||||||||    
T  829343 gtaacataaattcaaacaagtcatatgtgaaagagaaactcactttcatagaatcgaaaccaaactttcaa-gtaatccttagc 829425  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 10468375 - 10468313
Alignment:
Q  187 caagtaatatgaaaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaatcc 249  Q
    |||||||||||   |||||||||||||||||||  |||  |||||||||||||||||||||||    
T  10468375 caagtaatatgtggaagagaaactcactttcaatgagtcaaaaccaaactttcaacgtaatcc 10468313  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 246
Target Start/End: Original strand, 8437025 - 8437102
Alignment:
Q  169 aagtaacataaattctatcaagtaatatgaaaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaa 246  Q
    |||||||| |||||| |  ||||||||||   || |||||||||| |||||| ||| |||||||||||||||||||||    
T  8437025 aagtaacaaaaattcaaaaaagtaatatgtggaatagaaactcacattcaacgagtcgaaaccaaactttcaacgtaa 8437102  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 246
Target Start/End: Original strand, 8447379 - 8447456
Alignment:
Q  169 aagtaacataaattctatcaagtaatatgaaaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaa 246  Q
    |||||||| |||||  | |||||||||||   || |||||||||| |||||| ||| |||||||||||||||||||||    
T  8447379 aagtaacaaaaattaaaacaagtaatatgtggaatagaaactcacattcaacgagtcgaaaccaaactttcaacgtaa 8447456  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 838057 - 838005
Alignment:
Q  203 gagaaactcactttcaactagttgaaaccaaactttcaacgtaatccttagcc 255  Q
    |||||||||| ||||||  | |||||||||||||||||| |||||||||||||    
T  838057 gagaaactcattttcaatgaattgaaaccaaactttcaaagtaatccttagcc 838005  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 176 - 251
Target Start/End: Complemental strand, 10484779 - 10484704
Alignment:
Q  176 ataaattctatcaagtaatatgaaaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaatcctt 251  Q
    |||||||| | |||||||||||   |||||| |||||||||||||  || ||||| | ||||||||||||||||||    
T  10484779 ataaattcaaacaagtaatatgtggaagagacactcactttcaacgtgtcgaaactagactttcaacgtaatcctt 10484704  T

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Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 170 - 311
Target Start/End: Complemental strand, 37935426 - 37935285
Alignment:
Q  170 agtaacataaattctatcaagtaatatgaaaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaatccttagcccacaaccaccgtac 269  Q
    |||||||| ||||||| ||||||||||||  |||||| |||||||||||   ||| | |||||||||||||||||||||||| |||| |||||||| |      
T  37935426 agtaacatgaattctagcaagtaatatgaggaagagagactcactttcattgagtcggaaccaaactttcaacgtaatcctttgcccgcaaccaccatgt 37935327  T
Q  270 tttattagtaatttgaattggctcacctctattttctctgca 311  Q
    | |||||||||||  ||||  ||||| | |||| ||||||||    
T  37935326 tctattagtaattctaattttctcacatttattctctctgca 37935285  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 204 - 251
Target Start/End: Original strand, 19645452 - 19645499
Alignment:
Q  204 agaaactcactttcaactagttgaaaccaaactttcaacgtaatcctt 251  Q
    ||||||| ||||||||| ||||||||||||||||||||| ||||||||    
T  19645452 agaaacttactttcaacaagttgaaaccaaactttcaacataatcctt 19645499  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 21021047 - 21021087
Alignment:
Q  207 aactcactttcaactagttgaaaccaaactttcaacgtaat 247  Q
    |||| ||||||||| ||||||||||||||||||||| ||||    
T  21021047 aacttactttcaacaagttgaaaccaaactttcaacataat 21021087  T

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