View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20569_low_15 (Length: 377)
Name: NF20569_low_15
Description: NF20569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20569_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 365
Target Start/End: Complemental strand, 3768946 - 3768601
Alignment:
| Q |
18 |
aaaacggcataattcattacatgatatacaaaattattcaatgctgcaaatatattgaggtagaaatgttccacagggccgacctgagaccacatgaagt |
117 |
Q |
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| T |
3768946 |
aaaacgacataattcattacatgatatacaaaattattcaatgctgcaaatata--gaggtagagatgttccacagggccgacccgagaccacatgaagt |
3768849 |
T |
|
| Q |
118 |
tatcatatgtgtctaagctacacatctcatgtgttctcaggtcgcccctgctgaattctttctaccgcattgcaccttttgcttccaagtgacatgttgg |
217 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3768848 |
tatcatatgtgtctaagctacacatctcgtgtgttctcaggtcgcccctgctgaattctctctaccgcattgcaccttttgcttccaagtgacatgttgg |
3768749 |
T |
|
| Q |
218 |
ctcatgaattttctgttccaccaccatactgcaagtgtaaaataccgaatgttctttgtcccagaaggagtagctcaattttatgcgtcgagacatgaaa |
317 |
Q |
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|||||||||||||||||||||| |||| ||||||||||||||||||||| ||||| ||| |||||||||||||||||| ||||||| |||||||||| |
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| T |
3768748 |
ctcatgaattttctgttccacccgcatattgcaagtgtaaaataccgaatattcttcgtctcagaaggagtagctcaatcgtatgcgttaagacatgaaa |
3768649 |
T |
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| Q |
318 |
atagttctttgcaggggatcaaggattcagtttcacattactcgcctt |
365 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3768648 |
atagttctttgcaggagatcaaggattcagtttcacattactcgcctt |
3768601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 69 - 174
Target Start/End: Original strand, 38761963 - 38762068
Alignment:
| Q |
69 |
atattgaggtagaaatgttccacagggccgacctgagaccacatgaagttatcatatgtgtctaagctacacatctcatgtgttctcaggtcgcccctgc |
168 |
Q |
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||||||||||||| |||||| |||||| |||| ||||||||||||||| |||||||| |||||| | || || |||||||||||||||||||||||||| |
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| T |
38761963 |
atattgaggtagagatgttctacagggtcgacatgagaccacatgaagctatcatatttgtctatgttatccaactcatgtgttctcaggtcgcccctgc |
38762062 |
T |
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| Q |
169 |
tgaatt |
174 |
Q |
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|||||| |
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| T |
38762063 |
tgaatt |
38762068 |
T |
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