View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20569_low_17 (Length: 350)
Name: NF20569_low_17
Description: NF20569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20569_low_17 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 12 - 332
Target Start/End: Complemental strand, 6913239 - 6912919
Alignment:
| Q |
12 |
atgaaagcagcaaaatctaaggtcgctgaagctaaggaaaaggtaagatgatgcaaggtggtttgttttttgtttctgaaatggtgctattccaaactgt |
111 |
Q |
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| T |
6913239 |
atgaaagcagcaaaatctaaggtcgctgaagctaaggaaaaggtaagatgatgcaaggtggtttgttttttgtttctgaaatggtgctattccaaactgt |
6913140 |
T |
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| Q |
112 |
cacatggttttcatattgttgtgtacatgttatctacaggaaaaaagtcttaaactaaagttgcaggatgagatggctaaagctgctatatcaaatggaa |
211 |
Q |
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| T |
6913139 |
cacatggtgttcatattgttgtgtacatgttatctacaggaaaaaagtcttaaacaaaagttgcaggatgagatggctaaagctgctatatcaaatggaa |
6913040 |
T |
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| Q |
212 |
caaacctctcaatttcagaatatgatgctcttgtttcaaaaattaaaattgaagcagctaaagctcatagtgagttgcttgaggcaaaaggcacaattcc |
311 |
Q |
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| T |
6913039 |
caaacctctcaatttcagaatatgatgctcttgtttcaaaaattaaaattgaagcagctaaagctcatagtgagttgcttgaggcaaaaggcacaattcc |
6912940 |
T |
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| Q |
312 |
taaacgtatgttccgatgttt |
332 |
Q |
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| T |
6912939 |
taaacgtatgttccgatgttt |
6912919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 14 - 332
Target Start/End: Original strand, 156311 - 156632
Alignment:
| Q |
14 |
gaaagcagcaaaatctaaggtcgctgaagctaaggaaaaggtaagatgatgcaaggtggtttgttttttgtt---tctgaaatggtgctattccaaactg |
110 |
Q |
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|||||||||||| |||||||| |||| ||||||||||||||||||| ||||||| |||||||||| || | || | ||| | | | ||||||| |
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| T |
156311 |
gaaagcagcaaagtctaaggtttctgatgctaaggaaaaggtaagattgcacaaggtgttttgtttttttttggttttgtataggtacaactgcaaactg |
156410 |
T |
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| Q |
111 |
tcacatggttttcatattgttgtgtacatgttatctacaggaaaaaagtcttaaactaaagttgcaggatgagatggctaaagctgctatatcaaatgga |
210 |
Q |
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||||||||| |||||||||| |||||||||||||||||||||| ||||||||| | |||||||||||||||||| || || |||| | |||||| |||| |
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| T |
156411 |
tcacatggtgttcatattgtgatgtacatgttatctacaggaaagaagtcttaagcaaaagttgcaggatgagattgcaaatgctgttgtatcaagtgga |
156510 |
T |
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| Q |
211 |
acaaacctctcaatttcagaatatgatgctcttgtttcaaaaattaaaattgaagcagctaaagctcatagtgagttgcttgaggcaaaaggcacaattc |
310 |
Q |
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| T |
156511 |
gctagcctctcaatttcagaacatgatgctcttcttgcaaagataaaaagtgaagcaactaaagctcatactgagttgattgaggcaaaaggcacaattc |
156610 |
T |
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| Q |
311 |
ctaaacgtatgttccgatgttt |
332 |
Q |
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||||||||| ||| ||||||| |
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| T |
156611 |
ctaaacgtacgttgtgatgttt |
156632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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