View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20569_low_20 (Length: 317)
Name: NF20569_low_20
Description: NF20569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20569_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 19 - 286
Target Start/End: Complemental strand, 32984700 - 32984433
Alignment:
| Q |
19 |
aaaagggacattatcatccattttggagtcttcgcaaaaccctaactggttatcagaagctttatcagcagccattattgaaccacatagataaaactac |
118 |
Q |
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| T |
32984700 |
aaaagggacattatcatccattttggagtcttcacaaaaccctaactgattatccgaagctttatcagcagccattattgaactacatagataaaactac |
32984601 |
T |
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| Q |
119 |
gaaatagcaaacattagcacatagtcacttcaaatcatagatcaatcatcatcaagtagtaatataatatataccatgaagaccaagaaataaaacaaag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32984600 |
gaaatagcaaacattagcacatagtcacttcaaatcatagatcaatcatcatcaagtagtaatataatatataccatgaagaccaagaaataaaacaaag |
32984501 |
T |
|
| Q |
219 |
ggtttcaagtttgaattaatcagaaagcaagtgaaaaacgaaaacctagatagcatcatgcataaagt |
286 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32984500 |
ggtttcaagtttgaattaatcggaaagcaagtgaaaaacgaaaacctagatagcatcatgcataaagt |
32984433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 120 - 234
Target Start/End: Complemental strand, 39113102 - 39112980
Alignment:
| Q |
120 |
aaatagcaaacattagca-catagtcacttcaaatcatagatcaatcatcatcaagtagtaat-ata-atatata-----ccatgaagaccaagaaataa |
211 |
Q |
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||||||||||||| |||| |||| ||||||||||||||||||||||||| ||||||||||||| ||| ||||||| | ||||||||||||||||| |
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| T |
39113102 |
aaatagcaaacatgagcagcata-tcacttcaaatcatagatcaatcatgatcaagtagtaataatacatatataactatacttgaagaccaagaaataa |
39113004 |
T |
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| Q |
212 |
aacaaagggtttc-aagtttgaat |
234 |
Q |
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| T |
39113003 |
aataaagggtttcaaagtttgaat |
39112980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 39112901 - 39112814
Alignment:
| Q |
20 |
aaagggacattatcatccattttggagtcttcgcaaaaccctaactggttatcagaagctttatcagcagccattattgaaccacata |
107 |
Q |
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||||||||||| ||||||| || ||||||| | |||||||||| | |||||||||||| | | ||||||||||||||||| ||||| |
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| T |
39112901 |
aaagggacattgtcatccagttgggagtctacagaaaaccctaaattgttatcagaagcgtcgtgagcagccattattgaactacata |
39112814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 187
Target Start/End: Complemental strand, 39103799 - 39103765
Alignment:
| Q |
153 |
tcatagatcaatcatcatcaagtagtaatataata |
187 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
39103799 |
tcatagatcaatcatcatcaagtagtaatataata |
39103765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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