View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20569_low_21 (Length: 306)
Name: NF20569_low_21
Description: NF20569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20569_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 6 - 290
Target Start/End: Original strand, 7595772 - 7596045
Alignment:
| Q |
6 |
gagagatgaaggaattgaaggaaatatatttgcttccatatttaccaaaacagagaagctaaagcagaggattttatttatttttatcaagtaagtaaag |
105 |
Q |
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| T |
7595772 |
gagatatgaaggaattgaaggaaatatatttgcttccatatttaccaaaacagagaagctaaagcaggggattttatttttttttatcaagtaagtaaag |
7595871 |
T |
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| Q |
106 |
tatagtaataataacttttttacatgcacgtgcacccaccctacatatataatttccatggaccacacgatagttatggatataaatgtatatgtacgta |
205 |
Q |
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||||||||||||||||||||| | || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7595872 |
tatagtaataataactttttt---tacatgt------accctacatatataatttccatggaccacacgatagttatggatataaatgtatatgtacgta |
7595962 |
T |
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| Q |
206 |
ccgtagtgtcnnnnnnncgtggcgattgagtgaaggagtatgtaaagtgagagagatcagagggatgatgattttgtgaagaaga |
290 |
Q |
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|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7595963 |
ccgtagtgtcaaaaaaacgtggcgattgagtgaag--atatgtaaagtgagagagatcagagggatgatgattttgtgaagaaga |
7596045 |
T |
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