View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20569_low_22 (Length: 278)
Name: NF20569_low_22
Description: NF20569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20569_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 1251073 - 1251336
Alignment:
| Q |
1 |
caaaaaattatcatatgaacatgagatacatcagatgtaatatcaaatgaccaattcaaagattaaataattgatataaggtataaagtatgattcatga |
100 |
Q |
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| T |
1251073 |
caaaaaattatcatatgaacatgagatccatcagatgtaatatcaaatgaccaattcaaagattaaataattgatataaggtataaagtatgattcatga |
1251172 |
T |
|
| Q |
101 |
tggtatnnnnnnnntgtatgattcgtgtttatttaaacttagatacaagataccatattgaagatgcagagatgcatgagagagtaataaattgaagtgt |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1251173 |
tggtataaaaaaaatgtatgattcgtgtttatttaaacttagatacagtataccatattgaagatgcagagatgcatgagagagtaataaattgaagtgt |
1251272 |
T |
|
| Q |
201 |
tgcaactaaagagttttgtggcaatataaacgaatagtgcaatgaaaaagtgtaataccctttg |
264 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1251273 |
tgcaactaaagagttttgtagcaatataaacgaatagtgcaatgaaaaagtgtaataccctttg |
1251336 |
T |
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