View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20569_low_23 (Length: 277)
Name: NF20569_low_23
Description: NF20569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20569_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 6e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 120 - 269
Target Start/End: Complemental strand, 5334504 - 5334355
Alignment:
| Q |
120 |
cctgagcaaggattttttggggcaaaccggaaccttggaagaaggagacggcttcgacgccgctgacacgaccgtcgcaatccaaatcggcacgacggaa |
219 |
Q |
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| T |
5334504 |
cctgagcaaggattttttggggcaaaccggaaccttggaagaaggagacggcttcgacgccgctgatacgaccgtcgcaatccaaatcggcacgacggaa |
5334405 |
T |
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| Q |
220 |
aaaagcatcgaacaaaaccacattaggcgctgacaatgatgatgatgatg |
269 |
Q |
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| T |
5334404 |
aaaagcatcgaacaaaaccacattaggcgctgacaatgatgatgatgatg |
5334355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 5334596 - 5334562
Alignment:
| Q |
18 |
actactactgttaatattacattacaacactagtg |
52 |
Q |
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| T |
5334596 |
actactactgttaatattacattacaacactagtg |
5334562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 120 - 266
Target Start/End: Complemental strand, 43470382 - 43470236
Alignment:
| Q |
120 |
cctgagcaaggattttttggggcaaaccggaaccttggaagaaggagacggcttcgacgccgctgacacgaccgtcgcaatccaaatcggcacgacggaa |
219 |
Q |
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|||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||| ||||||| ||| ||||| | ||||||||||||||||||||| |
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| T |
43470382 |
cctgagcaaggacttttttgggcaaaccggaaccttggaagaaagagacggcttcgacaccgctgatacggccgtcacgatccaaatcggcacgacggaa |
43470283 |
T |
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| Q |
220 |
aaaagcatcgaacaaaaccacattaggcgctgacaatgatgatgatg |
266 |
Q |
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| T |
43470282 |
ataagcatcgaacagatccacattaggcgctgacgacgaagatgatg |
43470236 |
T |
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