View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20569_low_25 (Length: 263)
Name: NF20569_low_25
Description: NF20569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20569_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 9e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 56 - 222
Target Start/End: Original strand, 46598646 - 46598812
Alignment:
| Q |
56 |
ttaaaattaaagtatcaatgcttagcttagagtactaataataatccagaaagagaattgaaatctgagtttgtaggacaaaatccaagtgcagagtaat |
155 |
Q |
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| T |
46598646 |
ttaaaattaaagtatcaatgcttagcttagagtactaataataatccagaaagagaattgaaatctgagtttgtaggacaaaatccaagtgcagagtaat |
46598745 |
T |
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| Q |
156 |
taaataaatttccttaaactaaagtaataacagaaagaaaaaaaatatgatcatgattattgataca |
222 |
Q |
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| T |
46598746 |
tatataaatttccttaaactaaagtaataacagaaagaaaaaaaatatgatcatgattattaataca |
46598812 |
T |
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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 46598584 - 46598621
Alignment:
| Q |
13 |
aatattcagctatttacaaatataaaacagtaatagta |
50 |
Q |
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| T |
46598584 |
aatattcagctatttacaaatataaaacagtaatagta |
46598621 |
T |
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