View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20569_low_26 (Length: 257)

Name: NF20569_low_26
Description: NF20569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20569_low_26
NF20569_low_26
[»] chr1 (2 HSPs)
chr1 (1-247)||(5333809-5334069)
chr1 (66-138)||(17010879-17010952)
[»] chr6 (3 HSPs)
chr6 (77-245)||(14637783-14637950)
chr6 (62-131)||(26339383-26339453)
chr6 (70-138)||(15669562-15669631)
[»] chr7 (2 HSPs)
chr7 (57-191)||(9792459-9792592)
chr7 (57-131)||(28106885-28106960)
[»] chr4 (2 HSPs)
chr4 (62-138)||(44742537-44742614)
chr4 (62-138)||(13089644-13089721)
[»] chr8 (2 HSPs)
chr8 (90-218)||(24955119-24955245)
chr8 (57-131)||(24970867-24970942)
[»] chr5 (2 HSPs)
chr5 (70-191)||(29963912-29964032)
chr5 (70-191)||(30010766-30010886)
[»] chr3 (1 HSPs)
chr3 (62-138)||(36330676-36330753)


Alignment Details
Target: chr1 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 5334069 - 5333809
Alignment:
Q  1 tttacgataagttaaccattaacttagggcattgaatatggatataaaaatacaaa----------------cctctttatttttcacttatcttttact 84  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||                 ||||||||||||||||| ||||||||||    
T  5334069 tttacgataagttaaccattaacttagggcattgaataaggatataaaaatagaatttatagtatgtttggtcctctttatttttcactaatcttttact 5333970  T
Q  85 tctaaaagaagtggagccaaacataattttagtaaaactcttaataaaataagttacnnnnnnnngtaaagaaggaaatccaacaaaaataattttaaaa 184  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||| |||||||||    
T  5333969 tctaagagaagtggagccaaacataattttagtaaaactcttaataaaataagttactttttt--gtaaagaaggaaatccaacaaaaatgattttaaaa 5333872  T
Q  185 ataagatgtgaaattgaactttggaacaactttttagcatttctatcagcttctgcacctttg 247  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  5333871 ataagatgtgaaattgaactttggaacaacttttcagcatttatatcagcttctgcacctttg 5333809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 138
Target Start/End: Original strand, 17010879 - 17010952
Alignment:
Q  66 ttttcacttatcttttacttctaa-aagaagtggagccaaacataattttagtaaaactcttaataaaataagt 138  Q
    |||||||||||||| ||||||||| ||||||||| |||||||| ||||||| | ||  ||||||||||| ||||    
T  17010879 ttttcacttatcttctacttctaagaagaagtggggccaaacacaattttaattaagttcttaataaaagaagt 17010952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 77 - 245
Target Start/End: Complemental strand, 14637950 - 14637783
Alignment:
Q  77 cttttacttctaaa-agaagtggagccaaacataattttagtaaaactcttaataaaataagttacnnnnnnnngtaaagaaggaaatccaacaaaaata 175  Q
    |||||||||||||  |||||||| |||||||||||||||||||||  |||||||||||||||| ||        |||||||||||||||||||||||||     
T  14637950 cttttacttctaaggagaagtggggccaaacataattttagtaaagttcttaataaaataagtgacgttttt--gtaaagaaggaaatccaacaaaaatg 14637853  T
Q  176 attttaaaaataagatgtgaaattgaactttggaacaactttttagcatttctatcagcttctgcacctt 245  Q
    | ||||||||||||||||||||||||||||| ||||||||||||  || || ||||||||||||||||||    
T  14637852 actttaaaaataagatgtgaaattgaactttagaacaactttttgacacttatatcagcttctgcacctt 14637783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 131
Target Start/End: Complemental strand, 26339453 - 26339383
Alignment:
Q  62 ttatttttcacttatcttttacttctaaa-agaagtggagccaaacataattttagtaaaactcttaataa 131  Q
    ||||||| || ||||||||||||| |||| |||||||| |||||||||||||||  |||| ||||||||||    
T  26339453 ttattttccatttatcttttacttttaaagagaagtggggccaaacataattttgataaagctcttaataa 26339383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 138
Target Start/End: Complemental strand, 15669631 - 15669562
Alignment:
Q  70 cacttatcttttacttctaa-aagaagtggagccaaacataattttagtaaaactcttaataaaataagt 138  Q
    |||||||||| ||||||||| ||||||||| | |||||| ||||||| | ||| ||||||||||||||||    
T  15669631 cacttatcttctacttctaagaagaagtggggtcaaacacaattttaattaaattcttaataaaataagt 15669562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 57 - 191
Target Start/End: Complemental strand, 9792592 - 9792459
Alignment:
Q  57 cctctttatttttcacttatcttttacttctaa-aagaagtggagccaaacataattttagtaaaactcttaataaaataagttacnnnnnnnngtaaag 155  Q
    |||| ||||||| |||||||||||||||| ||| ||||||||| |||||||| ||||||| |||| |||||||||||| |||| ||        ||||||    
T  9792592 cctccttattttccacttatcttttacttttaagaagaagtggggccaaacacaattttaataaagctcttaataaaagaagtgac--ttttttgtaaag 9792495  T
Q  156 aaggaaatccaacaaaaataattttaaaaataagat 191  Q
    ||||||||||||||||||| | ||| ||||||||||    
T  9792494 aaggaaatccaacaaaaatgactttgaaaataagat 9792459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 28106885 - 28106960
Alignment:
Q  57 cctctttatttttcacttatcttttacttctaa-aagaagtggagccaaacataattttagtaaaactcttaataa 131  Q
    |||| ||||||| ||||| |||| ||||||||| ||||||| || ||||||||||||||| ||||  |||||||||    
T  28106885 cctccttattttccacttctcttctacttctaagaagaagtagaaccaaacataattttaataaagttcttaataa 28106960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 62 - 138
Target Start/End: Original strand, 44742537 - 44742614
Alignment:
Q  62 ttatttttcacttatcttttacttctaa-aagaagtggagccaaacataattttagtaaaactcttaataaaataagt 138  Q
    ||||||||||||| |||| ||||||||| ||||||||| |||||||| ||||||| |||| |||||||||||||||||    
T  44742537 ttatttttcacttctcttctacttctaagaagaagtggggccaaacacaattttaataaagctcttaataaaataagt 44742614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 138
Target Start/End: Original strand, 13089644 - 13089721
Alignment:
Q  62 ttatttttcacttatcttttacttctaa-aagaagtggagccaaacataattttagtaaaactcttaataaaataagt 138  Q
    ||||||||||||| |||| ||||||||| ||||||||| | |||||| |||||||  ||| |||||||||||||||||    
T  13089644 ttatttttcacttctcttctacttctaagaagaagtggggtcaaacacaattttaacaaagctcttaataaaataagt 13089721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 90 - 218
Target Start/End: Original strand, 24955119 - 24955245
Alignment:
Q  90 aagaagtggagccaaacataattttagtaaaactcttaataaaataagttacnnnnnnnngtaaagaaggaaatccaacaaaaataattttaaaaataag 189  Q
    ||||||| | |||||||||||||||| |||| ||||||||||||||||| ||         |||||||| ||| |||| |||| ||| ||||||||||||    
T  24955119 aagaagtagggccaaacataattttaataaagctcttaataaaataagtaactttttta--taaagaagaaaaaccaataaaagtaactttaaaaataag 24955216  T
Q  190 atgtgaaattgaactttggaacaactttt 218  Q
    ||| |||| ||||||||| ||||||||||    
T  24955217 atgggaaagtgaactttgaaacaactttt 24955245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 24970867 - 24970942
Alignment:
Q  57 cctctttatttttcacttatcttttacttctaaa-agaagtggagccaaacataattttagtaaaactcttaataa 131  Q
    |||| ||||||||||||| |||| |||||||||| |||||| | |||||||||||||||| ||||  |||||||||    
T  24970867 cctccttatttttcacttctcttctacttctaaagagaagtagggccaaacataattttaataaagttcttaataa 24970942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 70 - 191
Target Start/End: Original strand, 29963912 - 29964032
Alignment:
Q  70 cacttatcttttacttctaaa-agaagtggagccaaacataattttagtaaaactcttaataaaataagttacnnnnnnnngtaaagaaggaaatccaac 168  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||  |||| |||||||||| | |||| ||        |||||||||||||||||||    
T  29963912 cacttatcttttacttctaaagagaagtggggccaaacataattttgataaagctcttaataatagaagtgac--ttttttgtaaagaaggaaatccaac 29964009  T
Q  169 aaaaataattttaaaaataagat 191  Q
    |||| | | ||| ||||||||||    
T  29964010 aaaagtgactttgaaaataagat 29964032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 70 - 191
Target Start/End: Complemental strand, 30010886 - 30010766
Alignment:
Q  70 cacttatcttttacttctaaa-agaagtggagccaaacataattttagtaaaactcttaataaaataagttacnnnnnnnngtaaagaaggaaatccaac 168  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||  |||| |||||||||| | |||| ||        |||||||||||||||||||    
T  30010886 cacttatcttttacttctaaagagaagtggggccaaacataattttgataaagctcttaataatagaagtgac--ttttttgtaaagaaggaaatccaac 30010789  T
Q  169 aaaaataattttaaaaataagat 191  Q
    |||| | | ||| ||||||||||    
T  30010788 aaaagtgactttgaaaataagat 30010766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 138
Target Start/End: Original strand, 36330676 - 36330753
Alignment:
Q  62 ttatttttcacttatcttttacttctaa-aagaagtggagccaaacataattttagtaaaactcttaataaaataagt 138  Q
    ||||||| ||||| |||| ||||||||| ||||||||| | |||||| ||||||| |||| || ||||||||||||||    
T  36330676 ttattttccacttctcttctacttctaagaagaagtggggtcaaacacaattttaataaagcttttaataaaataagt 36330753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University