View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20569_low_27 (Length: 256)

Name: NF20569_low_27
Description: NF20569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20569_low_27
NF20569_low_27
[»] chr7 (3 HSPs)
chr7 (6-237)||(25527466-25527697)
chr7 (6-237)||(25514715-25514946)
chr7 (6-237)||(25535495-25535726)


Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 6 - 237
Target Start/End: Complemental strand, 25527697 - 25527466
Alignment:
Q  6 gcaacgactcgtccgacggtgttcacctgcaacgccatcatcggtgccatgcaccgcgcaaaaagacacaacgaagctcttgatttgcacgagttcttct 105  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25527697 gcaacgaatcgtccgacggtgttcacctgcaacgccatcatcggtgccatgcaccgcgcaaaaagacacaacgaagctcttgatttgtacgagttcttct 25527598  T
Q  106 ttaactcgtttaaaattactcctaacattgtctcttataactttatgatcaacgcatattgtgatgagggctgcattgatgcggccctcgatgtttttcg 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25527597 ttaactcgtttaaaattactcctaacattgtctcttataactttatgatcaacgcatattgtgatgagggctgcattgatgcggccctcgatgtttttcg 25527498  T
Q  206 gaaaatgaaggctgatgcatctatcaaaccct 237  Q
    ||||||||||||||||||||||||||||||||    
T  25527497 gaaaatgaaggctgatgcatctatcaaaccct 25527466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 6 - 237
Target Start/End: Original strand, 25514715 - 25514946
Alignment:
Q  6 gcaacgactcgtccgacggtgttcacctgcaacgccatcatcggtgccatgcaccgcgcaaaaagacacaacgaagctcttgatttgcacgagttcttct 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||| ||||||||||||    
T  25514715 gcaacgactcgtccgacggtgttcacctgcaacgccatcatcggtgccatgctccacgcaaaaagacacaaccaagctcttgatttgtacgagttcttct 25514814  T
Q  106 ttaactcgtttaaaattactcctaacattgtctcttataactttatgatcaacgcatattgtgatgagggctgcattgatgcggccctcgatgtttttcg 205  Q
    |||||| ||||||||||  |||||||||||||||| |||||||| | ||||| || ||||||||||||||| ||||||| ||||| ||||||||||||||    
T  25514815 ttaacttgtttaaaattgttcctaacattgtctctcataactttgttatcaatgcctattgtgatgagggccgcattgacgcggctctcgatgtttttcg 25514914  T
Q  206 gaaaatgaaggctgatgcatctatcaaaccct 237  Q
    |||||||||||| |||||||||||||||||||    
T  25514915 gaaaatgaaggccgatgcatctatcaaaccct 25514946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 6 - 237
Target Start/End: Complemental strand, 25535726 - 25535495
Alignment:
Q  6 gcaacgactcgtccgacggtgttcacctgcaacgccatcatcggtgccatgcaccgcgcaaaaagacacaacgaagctcttgatttgcacgagttcttct 105  Q
    ||||| |||||||| || |||||||||||||| || ||||| | ||| |||||||| || |||||| |||| ||||||||||||||| ||||||||||||    
T  25535726 gcaacaactcgtccaactgtgttcacctgcaatgctatcattgctgcaatgcaccgtgcgaaaagatacaatgaagctcttgatttgtacgagttcttct 25535627  T
Q  106 ttaactcgtttaaaattactcctaacattgtctcttataactttatgatcaacgcatattgtgatgagggctgcattgatgcggccctcgatgtttttcg 205  Q
    |||||   ||||||||| |||||||||||||||||||||||||| | ||||| || ||||||||||||||| ||||||| ||||| ||||||||||||||    
T  25535626 ttaacctctttaaaattgctcctaacattgtctcttataactttgttatcaatgcttattgtgatgagggccgcattgacgcggctctcgatgtttttcg 25535527  T
Q  206 gaaaatgaaggctgatgcatctatcaaaccct 237  Q
    |||||||||||| |||||||||||||||||||    
T  25535526 gaaaatgaaggccgatgcatctatcaaaccct 25535495  T

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