View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20569_low_28 (Length: 254)
Name: NF20569_low_28
Description: NF20569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20569_low_28 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 9 - 254
Target Start/End: Original strand, 25914641 - 25914885
Alignment:
| Q |
9 |
caagaatatcctgaagtaaaacctcaagcagcaattagaaaaataggttaacttgaaagaggtcgacgaatcgtgtgcgaatttcacatcagacattcat |
108 |
Q |
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| T |
25914641 |
caagaatatcctgaagtaaaacctcaagcaccaattagaaaaataggttaacttgaaagaggtcgacgaatcgtgtgcgaatttcacatcagacattcat |
25914740 |
T |
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| Q |
109 |
gatttaggaaatctatgataacaattgacgagcacatgatgaaaagaactagacnnnnnnnnnnnnnntaacagagtttacgcatgaaccaaaacgacta |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25914741 |
gatttaggaaatctatgataacaattgacgagcacatgatgaaaagaactagac-aaaaaaataaaaataacagagtttacgcatgaaccaaaacgacta |
25914839 |
T |
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| Q |
209 |
aagcatccaattcacacaaaaatcgaagaaaatcaattgaatacta |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25914840 |
aagcatccaattcacacaaaaatcgaagaaaatcaattgaatacta |
25914885 |
T |
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