View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20569_low_3 (Length: 560)

Name: NF20569_low_3
Description: NF20569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20569_low_3
NF20569_low_3
[»] chr5 (11 HSPs)
chr5 (33-230)||(3379876-3380072)
chr5 (382-550)||(3368960-3369125)
chr5 (174-251)||(3403224-3403300)
chr5 (456-550)||(3402963-3403057)
chr5 (174-251)||(3401854-3401930)
chr5 (255-328)||(3377823-3377895)
chr5 (174-251)||(3377933-3378009)
chr5 (132-181)||(3369196-3369245)
chr5 (174-231)||(3373740-3373796)
chr5 (132-181)||(3394813-3394862)
chr5 (519-555)||(3374834-3374870)


Alignment Details
Target: chr5 (Bit Score: 134; Significance: 2e-69; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 33 - 230
Target Start/End: Complemental strand, 3380072 - 3379876
Alignment:
Q  33 gggaatctcattacaacattgtctagcaattgcaaatgagatgaagccctataaattaaggtcaattgagttatttctagtatctttatctggatcattc 132  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||  || || | ||||||||||||||||    
T  3380072 gggaatctcattacaacattgtctagcaattgtaaatgagatgaagccctacaaattaaggtcaattgagttatggcttgtttgtttatctggatcattc 3379973  T
Q  133 ttctgcttatgttgttcccttgcaagagaagtaattgccattacctgatacatatcaatccattggaaaagagtaatcagaattgcataaacttgtca 230  Q
    |||||||||||||||||||||||||||||||||||  |  |||||||| ||||||||||||||||| |||||||||| ||||||| ||||||||||||    
T  3379972 ttctgcttatgttgttcccttgcaagagaagtaatcactgttacctgacacatatcaatccattgg-aaagagtaattagaattgaataaacttgtca 3379876  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 382 - 550
Target Start/End: Complemental strand, 3369125 - 3368960
Alignment:
Q  382 atgtcaaaaacttattaggctattattagcctttaaatattccatttgattttatagacatatagtttccttcacaggtacttacagttacaagacttgc 481  Q
    ||||||||||| |||||| ||||||   |||| ||||||||  ||||||||||||| || |||  || | ||| ||||||||||||| | || |||||||    
T  3369125 atgtcaaaaacatattagactatta---gcctctaaatattttatttgattttataaacctattattcctttcccaggtacttacagctgcaggacttgc 3369029  T
Q  482 agccaccattggaccagctacgtgaccggcaacaacattaccgtctagatcccctaaagaaacattcat 550  Q
    | |||||| ||||||||||||| ||||  |||||||||| || ||||||||| | ||||||||||||||    
T  3369028 aaccaccaatggaccagctacgcgaccaccaacaacatttccatctagatccacaaaagaaacattcat 3368960  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 174 - 251
Target Start/End: Complemental strand, 3403300 - 3403224
Alignment:
Q  174 tacctgatacatatcaatccattggaaaagagtaatcagaattgcataaacttgtcactgtgtactaattaccacaaa 251  Q
    |||||||||||||||||||||||||||| |||| || | ||||||||||||||||||||  |||||||||||||||||    
T  3403300 tacctgatacatatcaatccattggaaa-gagtgatgataattgcataaacttgtcacttagtactaattaccacaaa 3403224  T

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Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 456 - 550
Target Start/End: Complemental strand, 3403057 - 3402963
Alignment:
Q  456 caggtacttacagttacaagacttgcagccaccattggaccagctacgtgaccggcaacaacattaccgtctagatcccctaaagaaacattcat 550  Q
    |||||||||||| ||||| ||||||||||||||| ||||||||||||| ||||| |||||||||  || | ||||||| | ||||||||| ||||    
T  3403057 caggtacttacatttacaggacttgcagccaccaatggaccagctacgcgaccgccaacaacatgtccatgtagatccaccaaagaaacactcat 3402963  T

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Target: chr5; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 174 - 251
Target Start/End: Complemental strand, 3401930 - 3401854
Alignment:
Q  174 tacctgatacatatcaatccattggaaaagagtaatcagaattgcataaacttgtcactgtgtactaattaccacaaa 251  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||| | | || ||||||||||    
T  3401930 tacctgatacatatcaatccattggaaa-gagtaatgagaattgcatagacttgtcactgagaattagttaccacaaa 3401854  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 255 - 328
Target Start/End: Complemental strand, 3377895 - 3377823
Alignment:
Q  255 gcattcatttgttacattgtaccaatttctttagcaggagactaaaatatgtttctagatcatcaactttactt 328  Q
    |||| |||||||||||| ||||||||||| |||||||||  |||| | ||||| ||||||||||||||||||||    
T  3377895 gcatacatttgttacatagtaccaatttcgttagcaggaccctaata-atgttactagatcatcaactttactt 3377823  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 174 - 251
Target Start/End: Complemental strand, 3378009 - 3377933
Alignment:
Q  174 tacctgatacatatcaatccattggaaaagagtaatcagaattgcataaacttgtcactgtgtactaattaccacaaa 251  Q
    ||||||||||||||||||||| ||| |||||||||  | ||||||||| ||||||||||| | | || ||||||||||    
T  3378009 tacctgatacatatcaatccactgg-aaagagtaacgaaaattgcatagacttgtcactgagaattagttaccacaaa 3377933  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 3369245 - 3369196
Alignment:
Q  132 cttctgcttatgttgttcccttgcaagagaagtaattgccattacctgat 181  Q
    |||||||| ||||||||| ||||||||| |||||| | ||||||||||||    
T  3369245 cttctgctcatgttgttcacttgcaagaaaagtaactaccattacctgat 3369196  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 3373796 - 3373740
Alignment:
Q  174 tacctgatacatatcaatccattggaaaagagtaatcagaattgcataaacttgtcac 231  Q
    ||||||||||||||||||||||||| |||||||| | ||||||   ||||||||||||    
T  3373796 tacctgatacatatcaatccattgg-aaagagtactgagaattcagtaaacttgtcac 3373740  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 3394862 - 3394813
Alignment:
Q  132 cttctgcttatgttgttcccttgcaagagaagtaattgccattacctgat 181  Q
    |||||||| ||||||||| ||||||||| |||||| | ||||||||||||    
T  3394862 cttctgctcatgttgttcacttgcaagaaaagtaactaccattacctgat 3394813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 519 - 555
Target Start/End: Complemental strand, 3374870 - 3374834
Alignment:
Q  519 ttaccgtctagatcccctaaagaaacattcatctcac 555  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  3374870 ttaccgtctagatccgctaaagaaacattcatgtcac 3374834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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