View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20569_low_31 (Length: 252)
Name: NF20569_low_31
Description: NF20569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20569_low_31 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 16 - 252
Target Start/End: Complemental strand, 13798692 - 13798456
Alignment:
| Q |
16 |
atgtaactattgtacgttttttattatacaatacattgcaccatttaaatattacgatctaaattacaggtttaatttgaaccgctcaattatgtttgta |
115 |
Q |
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| T |
13798692 |
atgtaactgttgtaggttttttattatacaatacattgcaccatttaaatattacgatctaaattagaggtttaatttgaaccgctcaattatatttgta |
13798593 |
T |
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| Q |
116 |
gactttaaactccgttcattacactcgtgtgactgttgtacacttatttgtgaatagactcataataatgaacaaatataaattccactaagtatttgtt |
215 |
Q |
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| T |
13798592 |
gactttaaactccgttcattacactcatgtgactgttgtacacttatttgtgaatagactcgtaataatgaacaaatataaattccactaaatatttatt |
13798493 |
T |
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| Q |
216 |
acatgaatcaaaagtgttctatcaaaaaccatatttt |
252 |
Q |
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| T |
13798492 |
acatgaatcaaaagtgttctatgaaaaaccatatttt |
13798456 |
T |
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