View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20569_low_32 (Length: 250)
Name: NF20569_low_32
Description: NF20569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20569_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 109; Significance: 6e-55; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 25527999 - 25527879
Alignment:
| Q |
12 |
attctgctgggggtagtatatataagaagaaagatgttagaagaattcatttcattttcatttcaaattagaaagtacgaaattttagggtttcaaactc |
111 |
Q |
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| T |
25527999 |
attctgctggtggtagtatatataagaagaaagatgttagaagaattcatttcattttcatttcaaaatagaaagtacgaaattttagggtttcaaactc |
25527900 |
T |
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| Q |
112 |
aacaatgtcactctgtcgcca |
132 |
Q |
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|||||||||||||| |||||| |
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| T |
25527899 |
aacaatgtcactctttcgcca |
25527879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 25527819 - 25527761
Alignment:
| Q |
192 |
aacaagcagcaacggcggagccccagcctcctcctgaagaactccacacgcgtgtcacg |
250 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25527819 |
aacaagcagcaacggcggagcctcagcctcctcctgaagaactccacacgcgtgtcacg |
25527761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 199 - 248
Target Start/End: Complemental strand, 25535841 - 25535792
Alignment:
| Q |
199 |
agcaacggcggagccccagcctcctcctgaagaactccacacgcgtgtca |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25535841 |
agcaacggcggagccccagcctcctcctgaagaactccacacgcgcgtca |
25535792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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