View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20569_low_33 (Length: 249)
Name: NF20569_low_33
Description: NF20569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20569_low_33 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 23137086 - 23136847
Alignment:
| Q |
1 |
tgtttgaagactcattcctccaggccatttcaattgcatcccgacggctaagactgacttaaaattcaactgttccatttagtgcattatttatttttgt |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23137086 |
tgttggaagactcattcctccaggccatttcaattgcaacccgacggctaagactgacttaaaattcaactgttccatttagtgcattatttatttttgt |
23136987 |
T |
|
| Q |
101 |
aggtattgaggtctttatgtatcttgaaaacttaatatattct------gagattatttatatattttgccttttaaaaaatattcaactgttccagaca |
194 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23136986 |
aggtattgaggtctttatgtatcttgcaaacttaatatattctgagactgagattatttatatattttgccttttaaaaaatattcaactgttccagaca |
23136887 |
T |
|
| Q |
195 |
aacaagagaacgcaataattaaaatattgttatttggcag |
234 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23136886 |
aagaagagaacgcaataattaaaatattgttatttggcag |
23136847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University