View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20569_low_38 (Length: 238)
Name: NF20569_low_38
Description: NF20569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20569_low_38 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 6120186 - 6119966
Alignment:
| Q |
18 |
aattacacataatttcctattactctaatttttccattatatagatcaattatcacttatcaccaaacccattagaaattagcgacgccaactattcaca |
117 |
Q |
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| T |
6120186 |
aattacacataatttcctattactctaatttttccattatatagatcaattatcacttatcaccaaacccattagaaattagcgacgccaactattcaca |
6120087 |
T |
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| Q |
118 |
annnnnnnnaacaatagaaaaaacatgccaaaatccattaagacttgggacagaagcatcataaactcatttaaatcattatacacaaaagaaacattat |
217 |
Q |
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| T |
6120086 |
attttttttaacaatagaaaaaacatgccaaaatccattaagacttgggacagaagcatcataaactcatttaaatcattatacacaaaagaaacattat |
6119987 |
T |
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| Q |
218 |
agcaaagcaatggtccacaac |
238 |
Q |
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| T |
6119986 |
agcaaagcaatggtccacaac |
6119966 |
T |
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