View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20569_low_47 (Length: 205)
Name: NF20569_low_47
Description: NF20569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20569_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 41705495 - 41705682
Alignment:
| Q |
1 |
tttaattactccctttcattgacctctctcaccaatcacgttcttccacgtgtctgtactcttcatc-tttcattaataaccgtaattcaattcccaacc |
99 |
Q |
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| T |
41705495 |
tttaattactccctttcattgacctctctcaccaatcacgttcttccacgtgtctgtactcttcatcgtttcattaataaccgtaattcaattcccaacc |
41705594 |
T |
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| Q |
100 |
tctttttacttcatcgtcgccggttaaatctctccggcgagagtaacgcctctggatcaccgcacctcagccggcttgatgaaaaaac |
187 |
Q |
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| T |
41705595 |
tctttttacttcatcgtcgccggttaaatctctccggcgagagtaacgcctctggatcaccgcacctcagccggcttgatgaaaaaac |
41705682 |
T |
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Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 3 - 175
Target Start/End: Original strand, 45334881 - 45335050
Alignment:
| Q |
3 |
taattactccctttcattgacctctctcaccaatcacgttcttccacgtgtctgtactcttcatctttcattaataaccgtaattcaattcccaacctct |
102 |
Q |
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|||||||||| |||||||||| ||| ||||||| || |||||||| |||||||| |||||| || ||| |||| ||| |||||| | ||| || | ||| |
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| T |
45334881 |
taattactcc-tttcattgacatctatcaccaaccatattcttccatgtgtctgtcctcttcctcattcgttaaaaactgtaattta-ttctcatc-tct |
45334977 |
T |
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| Q |
103 |
ttttacttcatcgtcgccggttaaatctctccggcgagagtaacgcctctggatcaccgcacctcagccggct |
175 |
Q |
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||| ||||||| || | |||||||||||||||||||| || |||||| |||||| |||||| | ||||||||| |
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| T |
45334978 |
tttcacttcattgttgtcggttaaatctctccggcgaaagcaacgccactggattaccgcatcgcagccggct |
45335050 |
T |
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