View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20569_low_5 (Length: 529)
Name: NF20569_low_5
Description: NF20569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20569_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 510
Target Start/End: Original strand, 23159627 - 23160129
Alignment:
| Q |
1 |
ccttggtgtattttcggagacttcaatgatataatggataatagtgaaaaaagaggacgtgctacaagaccgcaatggttaataaacgactttcgtcaa- |
99 |
Q |
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| T |
23159627 |
ccttggtgtattttcggagacttcaatgatataatggataataatgaaaaaagaggacgtgctacaagaccgcaatggttaataaacgactttcgtcaaa |
23159726 |
T |
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| Q |
100 |
gctattcttgactctggtctatcagatgttacagtataaggttatccgctcacctggtttaaaagcggacacctcgtgcggttgaggaaaggttagatcg |
199 |
Q |
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| T |
23159727 |
gctgttcttgactctggtctatcagatgttacaatggaaggttatccgctcacctgatttaaaagcggacacctcgtgcggttgaggaaaggttagatcg |
23159826 |
T |
|
| Q |
200 |
agcccttgctattaatgcttggtttaatttattttcaaatgcactgttagaaaatcttgcagctccggtttttgaccattaccttgttctcttgcaccgt |
299 |
Q |
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| T |
23159827 |
agcccttgctattaatgcttggtttaatttatttccgaatgcactgttagaaaatcttgcagctccggtttctgaccattaccctgttctcttgcacc-- |
23159924 |
T |
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| Q |
300 |
tgctatgtgtctcggcctcctgctcctccttgcgaattcagatacgaaaatgcgtggcagctggagacgagttttaaggaaatagtaactgattcttgga |
399 |
Q |
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| T |
23159925 |
------gtgtctcgccctcctgctcctcctcgcaaattcagatacgaaaatgcgtgacagctggagacgagttttaaggaaatagtaattgattcttgga |
23160018 |
T |
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| Q |
400 |
atgtgcatctaactgattctattatttctaagttgtctgcttgtgtagatgatattttggtgtggaccaacacccattgtcgcaagttgaaatatgagat |
499 |
Q |
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| T |
23160019 |
atgtgcatctaactgattctattgtttctaagttgtctgcttgtgcagatgatattttggtgtggaccaacacccattgccgcaagttgaaatctgagat |
23160118 |
T |
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| Q |
500 |
tgaggactgtc |
510 |
Q |
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| T |
23160119 |
tgaggattgtc |
23160129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 235
Target Start/End: Complemental strand, 8865780 - 8865713
Alignment:
| Q |
168 |
acacctcgtgcggttgaggaaaggttagatcgagcccttgctattaatgcttggtttaatttattttc |
235 |
Q |
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||||| ||||| || || |||||||||||||| || ||||||| |||| ||||||| ||||||||||| |
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| T |
8865780 |
acaccgcgtgcagtggaagaaaggttagatcgtgctcttgctaataattcttggttgaatttattttc |
8865713 |
T |
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