View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20569_low_7 (Length: 512)
Name: NF20569_low_7
Description: NF20569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20569_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 9 - 279
Target Start/End: Original strand, 35064100 - 35064371
Alignment:
| Q |
9 |
caagaatatcaataaatcctagtataca-ccgtaaggatgaaaacagttaaattaaaaacgatcgagattaagaaccgaccttcattggtctgagcgttg |
107 |
Q |
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|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35064100 |
caagaaaatcaataaatcctagtatacaaccgtaaggatgaaaacagttaaattaaaaacgatcgagattaagaaccgaccttcattggtctgagcgtta |
35064199 |
T |
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| Q |
108 |
gtgaccagaaggtcaaaatcggtaccccttcccaaatgcttggatacaaatatactttgtttcaatgtaccaacagatatgaaaggaccatccataggaa |
207 |
Q |
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|| ||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35064200 |
gtaaccagaaggtcaaaatcagtaccccttccaaaacgcttggatacaaatatactttgtttcaatgtaccaacagatatgaaaggaccatccataggaa |
35064299 |
T |
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| Q |
208 |
ttgaataataatcttttgcactcttaaatttataatacaccgccatggtaaattactctattgaattaacac |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35064300 |
ttgaataataatcttttgcactcttaaatttataatacaccgccatggtaaattactctattgaattaacac |
35064371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 9 - 279
Target Start/End: Original strand, 43025366 - 43025627
Alignment:
| Q |
9 |
caagaatatcaataaatcctagtatacaccgtaaggatgaaaacagttaaattaaaaacgatcgagattaagaaccgaccttcattggtctgagcgttgg |
108 |
Q |
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| T |
43025366 |
caagaaaatcaataaatcctagt----acagtaacgatgaaaacag-----ttaaaaacgatcaagattaagaaccgaccttcattggtctgagcgttgg |
43025456 |
T |
|
| Q |
109 |
tgaccagaaggtcaaaatcggtaccccttcccaaatgcttggatacaaatatactttgtttcaatgtaccaacagatatgaaaggaccatccataggaat |
208 |
Q |
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| T |
43025457 |
tgaccagaaggtcaaaatcagtaccccttcccaaatgcttggatacaaatatactttgtttcaatgtaccaacagatataaaaggaccatccattggaat |
43025556 |
T |
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| Q |
209 |
tgaataataatcttttgcactcttaaatttataatacaccgccatggtaaattactctattgaattaacac |
279 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
43025557 |
tgaatggtaatcttttgcactcttaaatttataatacaccgccattgtaaattactctattcaattaacac |
43025627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 77 - 278
Target Start/End: Original strand, 42815210 - 42815411
Alignment:
| Q |
77 |
taagaaccgaccttcattggtctgagcgttggtgaccagaaggtcaaaatcggtaccccttcccaaatgcttggatacaaatatactttgtttcaatgta |
176 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42815210 |
taagaaccgaccttcattggtctgagcgttggtgaccagaaggtcaaaatcagtaccccttcctaaatgcttggatacaaatatactttgtttcaatgta |
42815309 |
T |
|
| Q |
177 |
ccaacagatatgaaaggaccatccataggaattgaataataatcttttgcactcttaaatttataatacaccgccatggtaaattactctattgaattaa |
276 |
Q |
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| T |
42815310 |
ccaacagatatgaaaggaccatccattggaattgaattataatcttttgcactcttaaatttataatacaccgccattgtagaatactctattgaattaa |
42815409 |
T |
|
| Q |
277 |
ca |
278 |
Q |
| |
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|| |
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|
| T |
42815410 |
ca |
42815411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 416 - 493
Target Start/End: Original strand, 35064503 - 35064580
Alignment:
| Q |
416 |
cctatctaggttacgatcgaataaatcgaaccactataacaatgaaaataaatctaaaattcttcaagaacgataaga |
493 |
Q |
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| T |
35064503 |
cctatctaggtcacgatcgaataaatcgaaccaccataacaatgaaaataaatctaaatttcttcaagaacgataaga |
35064580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 417 - 493
Target Start/End: Original strand, 42815534 - 42815610
Alignment:
| Q |
417 |
ctatctaggttacgatcgaataaatcgaaccactataacaatgaaaataaatctaaaattcttcaagaacgataaga |
493 |
Q |
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||||||||||||||||||||||||||||||||| | ||| || |||||||||||||||||||||||||||||||||| |
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| T |
42815534 |
ctatctaggttacgatcgaataaatcgaaccaccagaacgattaaaataaatctaaaattcttcaagaacgataaga |
42815610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 43025726 - 43025764
Alignment:
| Q |
454 |
acaatgaaaataaatctaaaattcttcaagaacgataag |
492 |
Q |
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| T |
43025726 |
acaatgaaaataaatctaaaactcttcaagaacgataag |
43025764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 79 - 257
Target Start/End: Complemental strand, 41562650 - 41562472
Alignment:
| Q |
79 |
agaaccgaccttcattggtctgagcgttggtgaccagaaggtcaaaatcggtaccccttcccaaatgcttggatacaaatatactttgtttcaatgtacc |
178 |
Q |
| |
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|||||| |||||||||||| || || |||||||| | || |||||||| ||||| || || |||||||| ||| ||||||| ||| |||||| ||||| |
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| T |
41562650 |
agaaccaaccttcattggtttgggcattggtgacgacgagatcaaaatcagtacctctccctaaatgctttgattcaaatattttttctttcaaagtacc |
41562551 |
T |
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| Q |
179 |
aacagatatgaaaggaccatccataggaattgaataataatcttttgcactcttaaatttataatacaccgccatggta |
257 |
Q |
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| T |
41562550 |
aacagagatgaaaggaccatccatggaaattgaatcataatctcttgcacttttaaatttataatacaccgccatggta |
41562472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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