View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2056_high_2 (Length: 1052)
Name: NF2056_high_2
Description: NF2056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2056_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 300 - 818
Target Start/End: Complemental strand, 2787519 - 2786998
Alignment:
| Q |
300 |
gtctaacgctagtttggcctatgcacattttgtcggggactgaaatgagccttcactcttttaannnnnnnnnatatatacattaaaatcgtgtgttaag |
399 |
Q |
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| T |
2787519 |
gtctaacgctagtttggcctatgcacattttgtcggagaccaaaatgagccttcactcttttaaaaatcttt--tatatacattaaaatcgtgtgttaag |
2787422 |
T |
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| Q |
400 |
aatcttaattgtnnnnnnnntcattttaacaaattctcttaaaatctctcac-gagtcaataaaaacccacaaattttttaaacaatatcg----ttata |
494 |
Q |
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| T |
2787421 |
aatcttaattgtaaaaaaaatcattttaacaaattctcttaaaatctctcactgagtcaataaaaacccacaaattttttaaacaatatcgctatatata |
2787322 |
T |
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| Q |
495 |
tcatgcgaaagaaattataacaaaaaggatcacaaaagagatttataaaccaatgaaaagatagagtttgcggaattcatgaattgtttgttgaaaagtg |
594 |
Q |
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| T |
2787321 |
tcatgcgaaagaaattataacaaaaaggatcacaaaagagatttataaaccaatgaaaagatagagtttgcggaattcatgaattgtttgttgaaaagtg |
2787222 |
T |
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| Q |
595 |
acggaagtcaacactaaagacttggtggaatacagttggcgatgttatcgtttcaacggtaaagaattgatggaatatacgtggcaatgctatcatgata |
694 |
Q |
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| T |
2787221 |
acggaagtcaacactaaagacttggtggaatacagttggcgatgttatcgtttcaacggtaaagaattgatggaatacacgtggcgatgctatcatgata |
2787122 |
T |
|
| Q |
695 |
ttttggttcgctattggcgatgttattgtttcaacggtaaagaattaatggaatacatgtggcgatgctatcgtgatattttgattcgctacaagtagcg |
794 |
Q |
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| T |
2787121 |
ttttggttcgctattggcgatgttatcgtttcaacggtaaagaattaatggaatacacgtggtgatgctatcgtgatattttggttcgctacaagtagcg |
2787022 |
T |
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| Q |
795 |
tcaccctttttaaaaattaaaaga |
818 |
Q |
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| T |
2787021 |
tcacccattttaaaaattaaaaga |
2786998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 889 - 1052
Target Start/End: Complemental strand, 2786927 - 2786764
Alignment:
| Q |
889 |
tgtgtgcactcactctcttttgtttttgcgttcttgtttcaaactttcaacaccatggccgagaagaaggtcatcgttgtcgtcgaaggcaccgctgcga |
988 |
Q |
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| T |
2786927 |
tgtgtgcactcactctcttttgtttttgcgctcttgtttcaaactttcaacaccatggcggagaagaaggtcatcgttgtcgtcgaaagcaccgctgcga |
2786828 |
T |
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| Q |
989 |
tgggaccgcactgggatactcttcaagtggattatctcaacaaaatcgccaagtccctttgtgg |
1052 |
Q |
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| T |
2786827 |
tgggaccgcactgggatactcttcaagtggattatctcaacaaaatcgtcaagtccctttgtgg |
2786764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 162 - 251
Target Start/End: Complemental strand, 2787626 - 2787537
Alignment:
| Q |
162 |
aagacgactgtattgtcatatattcccagacaaggttcaaaaataggaagaaaattgttggttgaagacaaaaattgacggaatgactaa |
251 |
Q |
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| T |
2787626 |
aagacgactgtattgtcatatattcccagtcacggttcaaaaataggaagaaaattgttggttgaagacgaaaattgacggaatgactaa |
2787537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 2787795 - 2787655
Alignment:
| Q |
18 |
atcaatttagtttcataaaatttaacaaattgcatttttatcatggagnnnnnnnn--tgactaatttcagttttaattaaatttttatagggaccaaat |
115 |
Q |
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| T |
2787795 |
atcaatttagtttcataaaatttaacaaattgcatttttgtcatggagaaaaaaaaaatgactaatttcagttttaattaaatttttatagggaccaaat |
2787696 |
T |
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| Q |
116 |
catccc-nnnnnnntttgtagagacttaactgtcccttatc |
155 |
Q |
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| T |
2787695 |
catcccaaaaaaattttgtagagacttaactgtcccttatc |
2787655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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