View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2056_high_3 (Length: 613)
Name: NF2056_high_3
Description: NF2056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2056_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 19 - 594
Target Start/End: Complemental strand, 36780297 - 36779731
Alignment:
| Q |
19 |
cattaagccacctcgagatctcaagcatgaaaggaatcatttcgaaaaatcttagttgtttatattttatctaaagtagtatccactatccactccaaag |
118 |
Q |
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| T |
36780297 |
cattaagccacctcgagatctcaagcatgaaaggaatcatttcgaaaaatctcagttgtttatattttatctaaagtagtatccgct-------ccaaag |
36780205 |
T |
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| Q |
119 |
aaagaagaagacagtgctatttttagtaatttaaaatgtacat-caatattggattgggacctgctactgtctgtcgccattacttgagcacgttacacc |
217 |
Q |
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| T |
36780204 |
aaag---aagacagtgacatttttagtaatttaaaatgtacataaaatattggattgggacctgctactgtctgtcgccattacttgagcacgttacacc |
36780108 |
T |
|
| Q |
218 |
aggtttctcattactaaccttctattctataaatagatatcaatactctccaaccaaataaacacacaccaaaaatggcaactatgattggaggatctgt |
317 |
Q |
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| T |
36780107 |
aggtttctcattactaaccttctattctataaatagatatcaatactctccaaccaaataaacacacgccaaaaatggcgactatgtttggaggatctgt |
36780008 |
T |
|
| Q |
318 |
tttgctatgcttcttctcactactattactctttccagttgcaatatcacagaaatgcaatccacaagacaagaaagcgttgctccaaatcaagaaggaa |
417 |
Q |
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| T |
36780007 |
tttgctatgcttcttctcactactattactctttccagttgcaatatcacagaaatgcaacccacaagacaagaaagcgttgctccaaatcaagaaggaa |
36779908 |
T |
|
| Q |
418 |
ctcaacaaccctacgtctctatcctcgtggaaccctcgcaaaaattgttgtgactgggtatttatccattgcgacgtaacaacttctcgtgtcatttggc |
517 |
Q |
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| T |
36779907 |
ctcaacaaccctacgtctctatcctcgtggaaccctcgcaaaaattgttgtgactgggtatttatccattgcgacgtaacaacttctcgtgtcatttggc |
36779808 |
T |
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| Q |
518 |
tcgctatccaattctccagcccagaccaattcaccaccccattcccaaacccagaattcataggtcatatatcccct |
594 |
Q |
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| T |
36779807 |
tcgctatccaattctcaagcccagaccaattcaccaccccattcccaaacccagaattcataggtcatatatcccct |
36779731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 428
Target Start/End: Original strand, 18141215 - 18141264
Alignment:
| Q |
379 |
ccacaagacaagaaagcgttgctccaaatcaagaaggaactcaacaaccc |
428 |
Q |
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| T |
18141215 |
ccacaagacaaaaaagccctactccaaatcaagaaagaactcaacaaccc |
18141264 |
T |
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