View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2056_high_6 (Length: 438)
Name: NF2056_high_6
Description: NF2056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2056_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 431
Target Start/End: Complemental strand, 2764460 - 2764031
Alignment:
| Q |
18 |
aaccctaacgaatattttcatcctgtatcttacgacactgtttcaattggtgttaattacagcaacaagaataaccaaagccttcttgctaccacactct |
117 |
Q |
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| T |
2764460 |
aaccctaacgaaaattttcatcctgtatcttacgacactgcttcaattggtgttaattacaacaacaagaataaccaaagccttcttgctaccacacttt |
2764361 |
T |
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| Q |
118 |
taaatcctttctctcaaggaaactatcacaaagtccatagaagagtccaattcaacatggatgtgaataatgatgtggtaacaaacattgccaatagttg |
217 |
Q |
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| T |
2764360 |
taaatcctttctctcaaggaaactatcacaaagtcgataaaagagtccaattcaacatggatgtgaataatgatgtagcaaagaacattgctgatagttg |
2764261 |
T |
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| Q |
218 |
ctcttgtggagctgttaattttgggattgtgttgtcaactccttttaagtacaagggcatatacgaccttttccgaagggttcgtcatttgaaggttgtt |
317 |
Q |
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| T |
2764260 |
ctctcgtggagctgttaattttgggattgtgttgtcaactccttttaagtacaagggcatatacgaccatttccgaaggattcgtcatttgaaggttgtt |
2764161 |
T |
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| Q |
318 |
tgtgagcctcttagctttataacctctcaaggtcatt-------------taattgggctttactacgtggtgtaagatgccactagttaa-cctactag |
403 |
Q |
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| T |
2764160 |
tgtgagcctcttagctttataacctctaaaggtcatttaaatggaacatctaattgggctttactacgcggtgtaagatgccactagttaaccctactag |
2764061 |
T |
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| Q |
404 |
aaaatagaggc--atgcatgtttacctttg |
431 |
Q |
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| T |
2764060 |
gaaatagaagcatatgcatgtttacctttg |
2764031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 35 - 357
Target Start/End: Complemental strand, 2760078 - 2759756
Alignment:
| Q |
35 |
tcatcctgtatcttacgacactgtttcaattggtgttaattacagcaacaagaataaccaaagccttcttgctaccacactcttaaatcctttctctcaa |
134 |
Q |
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| T |
2760078 |
tcatcgtgtatcttacaacactgtttctattggtgttcattacagcaacaagaataaccaaagccttcttgctaccacactcttaaaccctttctctcaa |
2759979 |
T |
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| Q |
135 |
ggaaactatcacaaagtccatagaagagtccaattcaacatggatgtgaataatgatgtggtaacaaacattgccaatagttgctcttgtggagctgtta |
234 |
Q |
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| T |
2759978 |
ataaacaatcacaaagacaataaaagagtccaattcaacatggatgtgaataatgatatagcaatgaacattgccgatagttgctctcgcggagctgttg |
2759879 |
T |
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| Q |
235 |
attttgggattgtgttgtcaactccttttaagtacaagggcatatacgaccttttccgaagggttcgtcatttgaaggttgtttgtgagcctcttagctt |
334 |
Q |
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| T |
2759878 |
attttgggattgtgttgtcaacttctttcaagtataagggcaggtacgaccattttcgaagggttcgtcatttgaaggttgtttgtgagcctcttagctt |
2759779 |
T |
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| Q |
335 |
tataacctctcaaggtcatttaa |
357 |
Q |
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| T |
2759778 |
tataacctctaaaggtcatttaa |
2759756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 35 - 357
Target Start/End: Complemental strand, 2769329 - 2769010
Alignment:
| Q |
35 |
tcatcctgtatcttacgacactgtttcaattggtgttaattacagcaacaagaataaccaaagccttcttgctaccacactcttaaatcctttctctcaa |
134 |
Q |
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||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
2769329 |
tcatcctgtatcttacgacactgtttctattggtgttagttacatcaacaagaataaccatagccttcttgctaccacactcttaaaccctttctctcaa |
2769230 |
T |
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| Q |
135 |
ggaaactatcacaaagtccatagaagagtccaattcaacatggatgtgaataatgatgtggtaacaaacattgccaatagttgctcttgtggagctgtta |
234 |
Q |
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| T |
2769229 |
ggaaac-atgg--atgcgaataaaagagtccaattcaacatggatgtgaataatgatgtggtagcaaacattgccgatagttgctctcgcggagctgtta |
2769133 |
T |
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| Q |
235 |
attttgggattgtgttgtcaactccttttaagtacaagggcatatacgaccttttccgaagggttcgtcatttgaaggttgtttgtgagcctcttagctt |
334 |
Q |
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| T |
2769132 |
actttgggattgtggtgtcaacttctttcaagtacaagggcaggtacgaccatttccgaagggttcgtcatttgaaggttgtttgtgagcctcttagctt |
2769033 |
T |
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| Q |
335 |
tataacctctcaaggtcatttaa |
357 |
Q |
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| T |
2769032 |
tataacctctgaaggtcatttaa |
2769010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 287 - 357
Target Start/End: Complemental strand, 2769623 - 2769553
Alignment:
| Q |
287 |
tttccgaagggttcgtcatttgaaggttgtttgtgagcctcttagctttataacctctcaaggtcatttaa |
357 |
Q |
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| T |
2769623 |
tttccgaagggttcgtcctttcaaggttgtttgtgagcctcttagctttataacctctgaaggtcatttaa |
2769553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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