View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2056_low_1 (Length: 1205)
Name: NF2056_low_1
Description: NF2056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2056_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 453 - 971
Target Start/End: Complemental strand, 2787519 - 2786998
Alignment:
| Q |
453 |
gtctaacgctagtttggcctatgcacattttgtcggggactgaaatgagccttcactcttttaannnnnnnnnatatatacattaaaatcgtgtgttaag |
552 |
Q |
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| T |
2787519 |
gtctaacgctagtttggcctatgcacattttgtcggagaccaaaatgagccttcactcttttaaaaatcttt--tatatacattaaaatcgtgtgttaag |
2787422 |
T |
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| Q |
553 |
aatcttaattgtnnnnnnnntcattttaacaaattctcttaaaatctctcac-gagtcaataaaaacccacaaattttttaaacaatatcg----ttata |
647 |
Q |
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| T |
2787421 |
aatcttaattgtaaaaaaaatcattttaacaaattctcttaaaatctctcactgagtcaataaaaacccacaaattttttaaacaatatcgctatatata |
2787322 |
T |
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| Q |
648 |
tcatgcgaaagaaattataacaaaaaggatcacaaaagagatttataaaccaatgaaaagatagagtttgcggaattcatgaattgtttgttgaaaagtg |
747 |
Q |
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| T |
2787321 |
tcatgcgaaagaaattataacaaaaaggatcacaaaagagatttataaaccaatgaaaagatagagtttgcggaattcatgaattgtttgttgaaaagtg |
2787222 |
T |
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| Q |
748 |
acggaagtcaacactaaagacttggtggaatacagttggcgatgttatcgtttcaacggtaaagaattgatggaatatacgtggcaatgctatcatgata |
847 |
Q |
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| T |
2787221 |
acggaagtcaacactaaagacttggtggaatacagttggcgatgttatcgtttcaacggtaaagaattgatggaatacacgtggcgatgctatcatgata |
2787122 |
T |
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| Q |
848 |
ttttggttcgctattggcgatgttattgtttcaacggtaaagaattaatggaatacatgtggcgatgctatcgtgatattttgattcgctacaagtagcg |
947 |
Q |
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| T |
2787121 |
ttttggttcgctattggcgatgttatcgtttcaacggtaaagaattaatggaatacacgtggtgatgctatcgtgatattttggttcgctacaagtagcg |
2787022 |
T |
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| Q |
948 |
tcaccctttttaaaaattaaaaga |
971 |
Q |
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| T |
2787021 |
tcacccattttaaaaattaaaaga |
2786998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 2e-86
Query Start/End: Original strand, 48 - 308
Target Start/End: Complemental strand, 2787918 - 2787655
Alignment:
| Q |
48 |
cttatatttcggttttcttcttacatttcctcacacacccttctatttcccattttttgtgagtatcagtgtcagtgatgacgatggttgtttcgaccaa |
147 |
Q |
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| T |
2787918 |
cttatatttcggttttcttcttacatttcctcacacacccttctatttcccattttttgtgagtatcagtttcaatgatgacgatggttgttttgaccaa |
2787819 |
T |
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| Q |
148 |
agaagtagaccgacnnnnnnngaatcaatttagtttcataaaatttaacaaattgcatttttatcatggag--nnnnnnnntgactaatttcagttttaa |
245 |
Q |
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| T |
2787818 |
agaagtagaccgacaaaaaaagaatcaatttagtttcataaaatttaacaaattgcatttttgtcatggagaaaaaaaaaatgactaatttcagttttaa |
2787719 |
T |
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| Q |
246 |
ttaaatttttatagggaccaaatcatccc-nnnnnnntttgtagagacttaactgtcccttatc |
308 |
Q |
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| T |
2787718 |
ttaaatttttatagggaccaaatcatcccaaaaaaattttgtagagacttaactgtcccttatc |
2787655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 148; E-Value: 2e-77
Query Start/End: Original strand, 1042 - 1205
Target Start/End: Complemental strand, 2786927 - 2786764
Alignment:
| Q |
1042 |
tgtgtgcactcactctcttttgtttttgcgttcttgtttcaaactttcaacaccatggccgagaagaaggtcatcgttgtcgtcgaaggcaccgctgcga |
1141 |
Q |
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| T |
2786927 |
tgtgtgcactcactctcttttgtttttgcgctcttgtttcaaactttcaacaccatggcggagaagaaggtcatcgttgtcgtcgaaagcaccgctgcga |
2786828 |
T |
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| Q |
1142 |
tgggaccgcactgggatactcttcaagtggattatctcaacaaaatcgccaagtccctttgtgg |
1205 |
Q |
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| T |
2786827 |
tgggaccgcactgggatactcttcaagtggattatctcaacaaaatcgtcaagtccctttgtgg |
2786764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 78; E-Value: 1e-35
Query Start/End: Original strand, 315 - 404
Target Start/End: Complemental strand, 2787626 - 2787537
Alignment:
| Q |
315 |
aagacgactgtattgtcatatattcccagacaaggttcaaaaataggaagaaaattgttggttgaagacaaaaattgacggaatgactaa |
404 |
Q |
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| T |
2787626 |
aagacgactgtattgtcatatattcccagtcacggttcaaaaataggaagaaaattgttggttgaagacgaaaattgacggaatgactaa |
2787537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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