View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2056_low_11 (Length: 236)

Name: NF2056_low_11
Description: NF2056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2056_low_11
NF2056_low_11
[»] chr1 (1 HSPs)
chr1 (35-219)||(9976680-9976864)
[»] chr7 (1 HSPs)
chr7 (49-219)||(7112087-7112254)
[»] chr3 (2 HSPs)
chr3 (49-134)||(5794511-5794597)
chr3 (35-125)||(5696039-5696130)
[»] chr4 (2 HSPs)
chr4 (46-131)||(9430207-9430290)
chr4 (46-131)||(9419064-9419147)
[»] chr6 (1 HSPs)
chr6 (71-141)||(18661101-18661167)
[»] chr8 (1 HSPs)
chr8 (57-111)||(41484412-41484467)


Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 35 - 219
Target Start/End: Complemental strand, 9976864 - 9976680
Alignment:
Q  35 cagagaaattgttgaaattgagttagagaatagaaaacaagaaggcgcaatgtggtaaagaacaaatccatatcaaatatagtaaaattatttaaggtag 134  Q
    ||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9976864 cagagaaatcgttgaaattgagctagagaatagaaaacaagaaggtgcaatgtggtaaagaacaaatccatatcaaatatagtaaaattatttaaggtag 9976765  T
Q  135 aagatattaaattgtaacattcaatatgtagttttattttcttgtgtttttccgccaaattttatgcatgtaaatcatatcaatt 219  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9976764 aagatattaaattttaacattcaatatgtagttttattttcttgtgtttttccgccaaattttatgcatgtaaatcctatcaatt 9976680  T

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Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 49 - 219
Target Start/End: Original strand, 7112087 - 7112254
Alignment:
Q  49 aaattgagttagagaatagaaaacaagaaggcgcaatgtggtaaagaacaaatc--catatcaaatatagtaaaattatttaaggtagaagatattaaat 146  Q
    ||||||||||| |||||||||||||||||| ||||| |||||||||||||||||  || || ||| ||||||||||||| |||| |||||||||||||||    
T  7112087 aaattgagttaaagaatagaaaacaagaagtcgcaacgtggtaaagaacaaatccacacattaaagatagtaaaattatataagttagaagatattaaat 7112186  T
Q  147 tgtaacattcaatatgtagttttattttcttgtgtttttccgccaaattttatgcatgtaaatcatatcaatt 219  Q
    | ||  ||||||||||||||||  |||||      |||||| |||| ||||||||||| ||||||||||||||    
T  7112187 tttattattcaatatgtagtttacttttc-----attttcccccaacttttatgcatgaaaatcatatcaatt 7112254  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 134
Target Start/End: Complemental strand, 5794597 - 5794511
Alignment:
Q  49 aaattgagttagagaatagaaaacaagaaggcg-caatgtggtaaagaacaaatccatatcaaatatagtaaaattatttaaggtag 134  Q
    ||||||||||||  ||||||||||||||||||| ||||| | ||||||||||||| || ||||| ||||| || |||| ||||||||    
T  5794597 aaattgagttaggaaatagaaaacaagaaggcgacaatgagataaagaacaaatctatctcaaagatagttaacttatataaggtag 5794511  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 125
Target Start/End: Complemental strand, 5696130 - 5696039
Alignment:
Q  35 cagagaaattgttgaaattgagttagagaatagaaaacaagaaggcg-caatgtggtaaagaacaaatccatatcaaatatagtaaaattat 125  Q
    |||||||||  |||||||||| ||||||||||  ||||||||||||| ||||| | ||||||||||| | || ||||| ||| |||| ||||    
T  5696130 cagagaaatcattgaaattgaattagagaatattaaacaagaaggcgacaatgagataaagaacaaaccaatctcaaagataataaacttat 5696039  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 131
Target Start/End: Original strand, 9430207 - 9430290
Alignment:
Q  46 ttgaaattgagttagagaatagaaaacaagaaggcgcaatgtggtaaagaacaaatccatatcaaatatagtaaaattatttaagg 131  Q
    ||||||||| |||| |||||||||| ||||| | |  |||| | |||||||||||||||| ||||| ||||||||||||| |||||    
T  9430207 ttgaaattgggttaaagaatagaaagcaagatgtc--aatgagataaagaacaaatccatctcaaagatagtaaaattatataagg 9430290  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 131
Target Start/End: Original strand, 9419064 - 9419147
Alignment:
Q  46 ttgaaattgagttagagaatagaaaacaagaaggcgcaatgtggtaaagaacaaatccatatcaaatatagtaaaattatttaagg 131  Q
    ||||||||  ||||||||||||||| ||||| | |  |||| | |||| ||||||||||| ||||| ||||||||||||| |||||    
T  9419064 ttgaaattaggttagagaatagaaagcaagatgtc--aatgagataaaaaacaaatccatctcaaagatagtaaaattatataagg 9419147  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 18661167 - 18661101
Alignment:
Q  71 acaagaaggcgcaatgtggtaaagaacaaatccatatcaaatatagtaaaattatttaaggtagaagatat 141  Q
    ||||||||| |||||| ||||||||||||||| || ||||    ||||||||||| |||||||||||||||    
T  18661167 acaagaaggtgcaatgaggtaaagaacaaatctatctcaa----agtaaaattatataaggtagaagatat 18661101  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 111
Target Start/End: Original strand, 41484412 - 41484467
Alignment:
Q  57 ttagagaatagaaaacaagaaggcg-caatgtggtaaagaacaaatccatatcaaa 111  Q
    |||||||||||||||||| || ||| ||||| |||||||||||||||||| |||||    
T  41484412 ttagagaatagaaaacaataatgcgtcaatgaggtaaagaacaaatccatctcaaa 41484467  T

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