View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2056_low_5 (Length: 479)
Name: NF2056_low_5
Description: NF2056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2056_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 7e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 48 - 308
Target Start/End: Complemental strand, 2787918 - 2787655
Alignment:
| Q |
48 |
cttatatttcggttttcttcttacatttcctcacacacccttctatttcccattttttgtgagtatcagtgtcagtgatgacgatggttgtttcgaccaa |
147 |
Q |
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| T |
2787918 |
cttatatttcggttttcttcttacatttcctcacacacccttctatttcccattttttgtgagtatcagtttcaatgatgacgatggttgttttgaccaa |
2787819 |
T |
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| Q |
148 |
agaagtagaccgacnnnnnnngaatcaatttagtttcataaaatttaacaaattgcatttttatcatggag--nnnnnnnntgactaatttcagttttaa |
245 |
Q |
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| T |
2787818 |
agaagtagaccgacaaaaaaagaatcaatttagtttcataaaatttaacaaattgcatttttgtcatggagaaaaaaaaaatgactaatttcagttttaa |
2787719 |
T |
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| Q |
246 |
ttaaatttttatagggaccaaatcatccc-nnnnnnntttgtagagacttaactgtcccttatc |
308 |
Q |
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| T |
2787718 |
ttaaatttttatagggaccaaatcatcccaaaaaaattttgtagagacttaactgtcccttatc |
2787655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 315 - 404
Target Start/End: Complemental strand, 2787626 - 2787537
Alignment:
| Q |
315 |
aagacgactgtattgtcatatattcccagacaaggttcaaaaataggaagaaaattgttggttgaagacaaaaattgacggaatgactaa |
404 |
Q |
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| T |
2787626 |
aagacgactgtattgtcatatattcccagtcacggttcaaaaataggaagaaaattgttggttgaagacgaaaattgacggaatgactaa |
2787537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 399 - 435
Target Start/End: Complemental strand, 976536 - 976500
Alignment:
| Q |
399 |
gactaaattgtctcagtttaattttttaagggactaa |
435 |
Q |
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| T |
976536 |
gactaaattatctcagtttaatttttcaagggactaa |
976500 |
T |
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