View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2056_low_8 (Length: 318)
Name: NF2056_low_8
Description: NF2056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2056_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 5e-96; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 26635159 - 26634982
Alignment:
| Q |
19 |
ggtttgtagttgaaggactcttttgtttgaatctttaggtataatctaaaagtgctatgaggttgaattgatgttttgggaatgtaggaggggaggatct |
118 |
Q |
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| T |
26635159 |
ggtttgtagttgaaggactcttttgtttgaatctttaggtataatctaaaagtgctatgaggttgaattgatgttttgggaatgtaggaggggaggatct |
26635060 |
T |
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| Q |
119 |
tcaattttttcagcataggcaactgcctcccaaaagcatttgtaagttgagtaggggacaaacaaatttgcctttttc |
196 |
Q |
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| T |
26635059 |
tcaattttttcagcataggcaactgcctcccaaaagcatttgtaagttgagtaggggacaaacaaatttgcctttttc |
26634982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 20 - 159
Target Start/End: Complemental strand, 26612255 - 26612116
Alignment:
| Q |
20 |
gtttgtagttgaaggactcttttgtttgaatctttaggtataatctaaaagtgctatgaggttgaattgatgttttgggaatgtaggaggggaggatctt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| | |
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| T |
26612255 |
gtttgtagttgaaggactcttttgtttgaatctttaggtataatctaaaagtgctatgaggttgaattgatgtttttggaaggtaggaggggaggatcct |
26612156 |
T |
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| Q |
120 |
caattttttcagcataggcaactgcctcccaaaagcattt |
159 |
Q |
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| T |
26612155 |
ctattttatcagcataggcaactgcctcccaaaagtattt |
26612116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 26627746 - 26627574
Alignment:
| Q |
19 |
ggtttgtagttgaaggactcttttgtttgaatctttaggtataatctaaaagtgctatgaggttgaattgatgttttgggaatgtaggaggggaggatct |
118 |
Q |
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| T |
26627746 |
ggtttatagttgaaggactcttttgtttgaatcttttggtataatttaaaagtgctatgaggttgaattgatgtttttggaatgta-----tgaggatcc |
26627652 |
T |
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| Q |
119 |
tcaattttttcagcataggcaactgcctcccaaaagcatttgtaagttgagtaggggacaaacaaatttgcctttttc |
196 |
Q |
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|| ||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26627651 |
tccattttttgagcataggcaactgcctcccaaaaagatttgtaagttgagttggggacaaacaaatttgcctttttc |
26627574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 26648263 - 26648088
Alignment:
| Q |
19 |
ggtttgtagttgaaggactcttttgtttgaatctttaggtataatctaaaagtgctatgaggttgaattgatgttttgggaatgtaggaggggaggatct |
118 |
Q |
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|||||||||||||||||||||| | ||||||| ||||||||||||||||||||| || | |||||||||||||||| |||| |||||||||||||||| |
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| T |
26648263 |
ggtttgtagttgaaggactcttgtctttgaatatttaggtataatctaaaagtgttactaagttgaattgatgtttttggaacgtaggaggggaggatcc |
26648164 |
T |
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| Q |
119 |
tcaattttttcagcataggcaactgcctcccaaaagcatttgtaagttgagtaggggacaaacaaatttgccttttt |
195 |
Q |
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|| ||||||||||||| ||||||| ||||||||||||||||| | |||| || ||||||| |||||||||||||| |
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| T |
26648163 |
tctattttttcagcattggcaactacctcccaaaagcatttgcatgttgggt-taggacaaagaaatttgccttttt |
26648088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 19 - 160
Target Start/End: Complemental strand, 26715715 - 26715574
Alignment:
| Q |
19 |
ggtttgtagttgaaggactcttttgtttgaatctttaggtataatctaaaagtgctatgaggttgaattgatgttttgggaatgtaggaggggaggatct |
118 |
Q |
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|||||||||||||||||||||| | ||||||| ||||||||||||||||||||| || | |||||||||||||||| |||| |||||||||||||||| |
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| T |
26715715 |
ggtttgtagttgaaggactcttgtctttgaatatttaggtataatctaaaagtgttactaagttgaattgatgtttttggaacgtaggaggggaggatcc |
26715616 |
T |
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| Q |
119 |
tcaattttttcagcataggcaactgcctcccaaaagcatttg |
160 |
Q |
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| T |
26715615 |
tctattttttcagcattgacaactacctcccaaaagcatttg |
26715574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 289
Target Start/End: Complemental strand, 26634920 - 26634888
Alignment:
| Q |
257 |
cattttaatgtgacataaggggattcatctcac |
289 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
26634920 |
cattttaatgtgacataaggggattcatttcac |
26634888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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