View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2056_low_9 (Length: 290)

Name: NF2056_low_9
Description: NF2056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2056_low_9
NF2056_low_9
[»] chr5 (4 HSPs)
chr5 (19-279)||(9197903-9198164)
chr5 (134-260)||(26449066-26449190)
chr5 (157-248)||(32528994-32529083)
chr5 (140-195)||(3522516-3522571)
[»] chr8 (2 HSPs)
chr8 (119-279)||(33304047-33304205)
chr8 (140-260)||(32897613-32897731)
[»] chr1 (3 HSPs)
chr1 (140-260)||(42471282-42471404)
chr1 (141-196)||(44108879-44108934)
chr1 (157-248)||(5715034-5715123)
[»] chr2 (3 HSPs)
chr2 (136-237)||(40626995-40627094)
chr2 (134-238)||(19427141-19427243)
chr2 (138-196)||(29463222-29463280)
[»] scaffold0377 (1 HSPs)
scaffold0377 (134-196)||(11929-11991)
[»] chr7 (2 HSPs)
chr7 (134-196)||(42078130-42078192)
chr7 (134-196)||(37970443-37970505)
[»] chr4 (3 HSPs)
chr4 (134-196)||(14518556-14518618)
chr4 (217-272)||(26634578-26634632)
chr4 (135-196)||(171929-171990)
[»] chr3 (3 HSPs)
chr3 (139-248)||(40417621-40417727)
chr3 (141-196)||(20525556-20525611)
chr3 (168-243)||(48935746-48935819)
[»] chr6 (1 HSPs)
chr6 (153-228)||(31799395-31799468)


Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 9197903 - 9198164
Alignment:
Q  19 gatggcggtgttcaaagacaatgaatctggttgatggaatgacgaagggggcaaatggtggagatgaatatgccccagcgttgttaannnnnnnncc-cc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||           ||    
T  9197903 gatggcggtgttcaaagacaatgaatctggttgatggaatgacgaagggggcaaatggtggagatgaatatgccccaacgttgttaatttctttttttcc 9198002  T
Q  118 ttcatgttaataacacgtgcatcaaacacataatatgataaaataatattatcatctttgttatcatgtgtgcaccaaaaacttatgacatgataagtgt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||    
T  9198003 ttcatgttaataacacgtgcatcaaacacataatatgataaaataatattatcatcttttttatcatgtgtgcaccaagaacgtatgacatgataagtgt 9198102  T
Q  218 ctatcttatccctatcatatcctatctttattcattttctaattttatcacgtctctttcat 279  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||||  ||||||||||    
T  9198103 ctatcttatccctatcatatcctatctttattcattttttaatcttatcatatctctttcat 9198164  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 134 - 260
Target Start/End: Original strand, 26449066 - 26449190
Alignment:
Q  134 gtgcatcaaacacataatatgataaaataatattatcatctttgttatcatgtgtgcaccaaaaacttatgacatgataagtgtctatcttatccctatc 233  Q
    ||||| ||||||||| ||| |||||||||||  |||||||||| ||||||| |||||||||||| |  |||| | |||||||||||||| | || |||||    
T  26449066 gtgcaacaaacacatgataggataaaataatgatatcatctttcttatcatatgtgcaccaaaagc--atgataggataagtgtctatcatgtcactatc 26449163  T
Q  234 atatcctatctttattcattttctaat 260  Q
    ||||| ||| ||||| |||||||||||    
T  26449164 atatcatatttttatccattttctaat 26449190  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 157 - 248
Target Start/End: Complemental strand, 32529083 - 32528994
Alignment:
Q  157 aaaataatattatcatctttgttatcatgtgtgcaccaaaaacttatgacatgataagtgtctatcttatccctatcatatcctatctttat 248  Q
    ||||||||| |||||| ||||||||||| | ||||||||| ||  |||| |  ||||||||||||| ||||  |||||||||||||||||||    
T  32529083 aaaataatactatcatatttgttatcatctatgcaccaaacac--atgatagaataagtgtctatcatatcagtatcatatcctatctttat 32528994  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 195
Target Start/End: Complemental strand, 3522571 - 3522516
Alignment:
Q  140 caaacacataatatgataaaataatattatcatctttgttatcatgtgtgcaccaa 195  Q
    ||||||||  ||| ||||||||||| ||||||||||| |||||||| |||||||||    
T  3522571 caaacacacgataggataaaataatgttatcatcttttttatcatgcgtgcaccaa 3522516  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 119 - 279
Target Start/End: Complemental strand, 33304205 - 33304047
Alignment:
Q  119 tcatgttaataacacgtg--catcaaacacataatatgataaaataatattatcatctttgttatcatgtgtgcaccaaaaacttatgacatgataagtg 216  Q
    |||||||||||||| |||  ||||||| | |||||| ||||||| ||||||||||||||| ||||||||||| || |||| ||  || | || |||| ||    
T  33304205 tcatgttaataacaagtgtgcatcaaatatataataagataaaacaatattatcatctttcttatcatgtgtacatcaaacac--ataatataataaatg 33304108  T
Q  217 tctatcttatccctatcatatcctatctttattcattttctaattttatcacgtctctttcat 279  Q
    ||||||  ||| | ||||||| |||||||||| ||||||||||| |||||  |||||| ||||    
T  33304107 tctatc-catcacgatcatat-ctatctttatccattttctaatcttatctagtctctatcat 33304047  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 260
Target Start/End: Original strand, 32897613 - 32897731
Alignment:
Q  140 caaacacataatatgataaaataatattatcatctttgttatcatgtgtgcaccaaaaacttatgacatgataagtgtctatcttatccctatcatatcc 239  Q
    |||||| || ||| ||||||| ||| ||||| ||||| ||||||| | |||||||||  | ||||| | ||||| |||||||| | || ||||| ||||     
T  32897613 caaacatatgataggataaaaaaatgttatcctctttcttatcatatctgcaccaaa--cgtatgataggataaatgtctatcatgtcactatcctatca 32897710  T
Q  240 tatctttattcattttctaat 260  Q
    |||||| || |||||||||||    
T  32897711 tatcttgatccattttctaat 32897731  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 140 - 260
Target Start/End: Complemental strand, 42471404 - 42471282
Alignment:
Q  140 caaacacataatatgata----aaataatattatcatctttgttatcatgtgtgcaccaaaaacttatgacatgataagtgtctatcttatccctatcat 235  Q
    ||||||||| ||||||||    |||||||  |||||| ||| ||||||||||||||||||| ||  |||| ||||||| |||||||| ||||  ||||||    
T  42471404 caaacacatgatatgatatgataaataatgctatcatatttcttatcatgtgtgcaccaaacac--atgatatgataaatgtctatcatatcattatcat 42471307  T
Q  236 atcctatctttattcattttctaat 260  Q
    ||| |||||||||  ||||||||||    
T  42471306 atcatatctttatctattttctaat 42471282  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 44108879 - 44108934
Alignment:
Q  141 aaacacataatatgataaaataatattatcatctttgttatcatgtgtgcaccaaa 196  Q
    ||||||||||||||||||||||||  |||||| ||| ||||||||||||| |||||    
T  44108879 aaacacataatatgataaaataatgctatcatgtttattatcatgtgtgccccaaa 44108934  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 248
Target Start/End: Complemental strand, 5715123 - 5715034
Alignment:
Q  157 aaaataatattatcatctttgttatcatgtgtgcaccaaaaacttatgacatgataagtgtctatcttatccctatcatatcctatctttat 248  Q
    ||||||||||||| || ||| |||||||| |||||||  |||| ||||| ||||||| | ||||||||| | ||||||| ||  ||||||||    
T  5715123 aaaataatattataatatttattatcatgcgtgcacc--aaacatatgatatgataaatatctatcttaccactatcatgtctcatctttat 5715034  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 237
Target Start/End: Original strand, 40626995 - 40627094
Alignment:
Q  136 gcatcaaacacataatatgataaaataatattatcatctttgttatcatgtgtgcaccaaaaacttatgacatgataagtgtctatcttatccctatcat 235  Q
    ||||||||||||| |||| ||||||||| | |||| || || |||||||||||| |||||| ||  |||| |||||||||||||||||| |  |||||||    
T  40626995 gcatcaaacacatgatataataaaataagaatatcctccttcttatcatgtgtgtaccaaacac--atgaaatgataagtgtctatcttgttactatcat 40627092  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 238
Target Start/End: Original strand, 19427141 - 19427243
Alignment:
Q  134 gtgcatcaaacacataatatgataaaataatattatcatctttgttatcatgtgtgcaccaaaaacttatgacatgataagtgtctatcttatccctatc 233  Q
    ||||| |||||||| |||||||||| |||||  |||||| ||| ||||||| | |||||||||  | ||||||| ||||  ||||||||||||| ||||     
T  19427141 gtgcaccaaacacaaaatatgataacataatgctatcatatttattatcatatatgcaccaaa--cgtatgacacgatagatgtctatcttatcactatg 19427238  T
Q  234 atatc 238  Q
    |||||    
T  19427239 atatc 19427243  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 196
Target Start/End: Original strand, 29463222 - 29463280
Alignment:
Q  138 atcaaacacataatatgataaaataatattatcatctttgttatcatgtgtgcaccaaa 196  Q
    |||||||| || |||||||||||||||  |||||||||| ||||||| ||| |||||||    
T  29463222 atcaaacatatgatatgataaaataatgctatcatctttcttatcatatgtacaccaaa 29463280  T

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Target: scaffold0377 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0377
Description:

Target: scaffold0377; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 196
Target Start/End: Original strand, 11929 - 11991
Alignment:
Q  134 gtgcatcaaacacataatatgataaaataatattatcatctttgttatcatgtgtgcaccaaa 196  Q
    |||||||||| |||| ||||||||||||||| ||||||| |||  ||||||| ||||||||||    
T  11929 gtgcatcaaaaacatgatatgataaaataatgttatcatatttcctatcatgcgtgcaccaaa 11991  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 196
Target Start/End: Original strand, 42078130 - 42078192
Alignment:
Q  134 gtgcatcaaacacataatatgataaaataatattatcatctttgttatcatgtgtgcaccaaa 196  Q
    |||||||||| | || ||||||||||||||| ||||||| ||| |||||||| ||||||||||    
T  42078130 gtgcatcaaaaatatgatatgataaaataatgttatcatatttcttatcatgcgtgcaccaaa 42078192  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 196
Target Start/End: Original strand, 37970443 - 37970505
Alignment:
Q  134 gtgcatcaaacacataatatgataaaataatattatcatctttgttatcatgtgtgcaccaaa 196  Q
    ||||| ||||| ||| ||| |||||||||||  |||||||||| |||||| ||||||||||||    
T  37970443 gtgcaccaaacgcatgataggataaaataatgctatcatcttttttatcaagtgtgcaccaaa 37970505  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 196
Target Start/End: Original strand, 14518556 - 14518618
Alignment:
Q  134 gtgcatcaaacacataatatgataaaataatattatcatctttgttatcatgtgtgcaccaaa 196  Q
    ||||| |||||| || ||||||||||||||||||||||||||| ||||| |||| ||| ||||    
T  14518556 gtgcaccaaacatatgatatgataaaataatattatcatctttcttatcttgtgcgcatcaaa 14518618  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 272
Target Start/End: Complemental strand, 26634632 - 26634578
Alignment:
Q  217 tctatcttatccctatcatatcctatctttattcattttctaattttatcacgtct 272  Q
    ||||||||||| |||||||||| ||||||||| |||||||||||| ||||| ||||    
T  26634632 tctatcttatcactatcatatc-tatctttatccattttctaattctatcatgtct 26634578  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 196
Target Start/End: Complemental strand, 171990 - 171929
Alignment:
Q  135 tgcatcaaacacataatatgataaaataatattatcatctttgttatcatgtgtgcaccaaa 196  Q
    ||||| ||| |||| ||||||||||||||||| || || ||||||||| |||||||| ||||    
T  171990 tgcataaaatacatgatatgataaaataatatgataatatttgttatcttgtgtgcatcaaa 171929  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 248
Target Start/End: Original strand, 40417621 - 40417727
Alignment:
Q  139 tcaaacacataatatgataaaataatattatcatctttgttatcatgtgtgcaccaaaaacttatgacatgataagtgtctatcttatccctatcatatc 238  Q
    |||||||||| |||||||||||||||  |||||| ||| |||||||| |||||||  |||| ||||| ||||||| ||| |||| | || || |||||||    
T  40417621 tcaaacacatgatatgataaaataatgctatcatatttcttatcatgcgtgcacc--aaacatatgatatgataaatgt-tatcatgtcactgtcatatc 40417717  T
Q  239 ctatctttat 248  Q
    ||||| ||||    
T  40417718 ctatccttat 40417727  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 20525556 - 20525611
Alignment:
Q  141 aaacacataatatgataaaataatattatcatctttgttatcatgtgtgcaccaaa 196  Q
    ||||| || |||||||||||||||| |||||||||| ||||||| | |||||||||    
T  20525556 aaacatatgatatgataaaataataatatcatctttcttatcatatctgcaccaaa 20525611  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 243
Target Start/End: Complemental strand, 48935819 - 48935746
Alignment:
Q  168 atcatctttgttatcatgtgtgcaccaaaaacttatgacatgataagtgtctatcttatccctatcatatcctatc 243  Q
    ||||||||| ||||||||||| ||||||| ||  |||| | |||||||||||||| | || ||||| |||||||||    
T  48935819 atcatctttcttatcatgtgtacaccaaacac--atgataggataagtgtctatcatgtcactatcctatcctatc 48935746  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 228
Target Start/End: Complemental strand, 31799468 - 31799395
Alignment:
Q  153 tgataaaataatattatcatctttgttatcatgtgtgcaccaaaaacttatgacatgataagtgtctatcttatcc 228  Q
    ||||||||||||| |||||| ||| ||||||| ||||||   ||||| ||||| |||||||||||||||| |||||    
T  31799468 tgataaaataatactatcatatttcttatcatatgtgca--taaaacatatgatatgataagtgtctatcctatcc 31799395  T

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