View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20570_high_17 (Length: 448)
Name: NF20570_high_17
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20570_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 406; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 15 - 432
Target Start/End: Complemental strand, 39864071 - 39863654
Alignment:
| Q |
15 |
ggaggagcaaaacaaaaacagtttagccgaagaaacaaatgttgataaaaatgaagctcaacagtcaaaagtggacgtagagaccactaatgatgaaggt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
39864071 |
ggaggagcaaaacaaaaacagtttagccgaagaaacaaatgttgataaaaatgaagctcaacagtcaaaagtggacttagagaccactaatgatgaaggt |
39863972 |
T |
|
| Q |
115 |
accagcaaagccaacaattcaaaattcgtcggcatagactttgaaaaaattaatgatatgatacttgaggagttgagaatatcattgctgcaacaaacca |
214 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39863971 |
accagcaaagccaacaattcaaaattcgtcggcatagactttgaaaaaattaatgatatgatacttgaggagttgagaatatcattgctgcaacaaacca |
39863872 |
T |
|
| Q |
215 |
atgttgacaaaagcgctaaaggtcaaccggaaaaagtggacatagagaccactcacaatgaaggttccagcaaagccagctcttcacaaaaaatcagcct |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39863871 |
atgttgacaaaagcgctaaaggtcaaccggaaaaagtggacatagagaccactcacaatgaaggttccagcaaagccagctcttcacaaaaaatcagcct |
39863772 |
T |
|
| Q |
315 |
agacttgaaagatattgatgctatgatagatgaggatgttattgctgcaatcgacaaagttttatccgaagggaataccatttcattacaatttcaacat |
414 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
39863771 |
agacttgaaagatattgatgctatgataggtgaggatgttattgctgcaatcgacaaagttttatccgaagggaataccatttcattacaatttcagcat |
39863672 |
T |
|
| Q |
415 |
tctgttcaaggacaagaa |
432 |
Q |
| |
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|||||||||||||||||| |
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| T |
39863671 |
tctgttcaaggacaagaa |
39863654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 246 - 432
Target Start/End: Complemental strand, 39856638 - 39856452
Alignment:
| Q |
246 |
aaaagtggacatagagaccactcacaatgaaggttccagcaaagccagctcttcacaaaaaatcagcctagacttgaaagatattgatgctatgatagat |
345 |
Q |
| |
|
||||||||| |||||||||||| | |||||||| ||| |||||||| | ||| | || ||||| |||||||||||| |||||||||||||||||| |
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| T |
39856638 |
aaaagtggatatagagaccacttatgatgaaggtaccaacaaagccaacactttaaaatttgtcagcaaagacttgaaagaaattgatgctatgatagat |
39856539 |
T |
|
| Q |
346 |
gaggatgttattgctgcaatcgacaaagttttatccgaagggaataccatttcattacaatttcaacattctgttcaaggacaagaa |
432 |
Q |
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|||||||| |||| ||| ||||||| ||| ||||| ||||||| ||| |||| ||| ||| ||| |||||||||||| ||||||| |
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| T |
39856538 |
gaggatgtcattggtgcgatcgacagagtgttatcagaagggattactctttccttaaaatctcaccattctgttcaaaaacaagaa |
39856452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 308 - 388
Target Start/End: Complemental strand, 39897150 - 39897070
Alignment:
| Q |
308 |
tcagcctagacttgaaagatattgatgctatgatagatgaggatgttattgctgcaatcgacaaagttttatccgaaggga |
388 |
Q |
| |
|
||||| |||||||| |||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||| |
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| T |
39897150 |
tcagcatagacttggaagaaattgatgctatgatagatgaggatgtcattgctgcaatcgacagagttttatcagaaggga |
39897070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 66 - 177
Target Start/End: Complemental strand, 39856653 - 39856542
Alignment:
| Q |
66 |
tgaagctcaacagtcaaaagtggacgtagagaccactaatgatgaaggtaccagcaaagccaacaattcaaaattcgtcggcatagactttgaaaaaatt |
165 |
Q |
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|
|||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||| || |||||| ||| ||| |||||| || ||||| |
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| T |
39856653 |
tgaagctcaacagtcaaaagtggatatagagaccacttatgatgaaggtaccaacaaagccaacactttaaaatttgtcagcaaagacttgaaagaaatt |
39856554 |
T |
|
| Q |
166 |
aatgatatgata |
177 |
Q |
| |
|
||| ||||||| |
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|
| T |
39856553 |
gatgctatgata |
39856542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 315 - 432
Target Start/End: Original strand, 38980373 - 38980490
Alignment:
| Q |
315 |
agacttgaaagatattgatgctatgatagatgaggatgttattgctgcaatcgacaaagttttatccgaagggaataccatttcattacaatttcaacat |
414 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |||||| | ||| ||| ||||||||| ||||||| ||||||||| || ||| ||| ||| |
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|
| T |
38980373 |
agacttgaaagaagttgatgctatgatagatgaggatgtcattgcttctatcaacagagttttatcagaagggattaccatttccgtaaaatctcagcat |
38980472 |
T |
|
| Q |
415 |
tctgttcaaggacaagaa |
432 |
Q |
| |
|
||||| |||| ||||||| |
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|
| T |
38980473 |
tctgtccaagaacaagaa |
38980490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 271 - 433
Target Start/End: Original strand, 39737483 - 39737645
Alignment:
| Q |
271 |
aatgaaggttccagcaaagccagctcttcacaaaaaatcagcctagacttgaaagatattgatgctatgatagatgaggatgttattgctgcaatcgaca |
370 |
Q |
| |
|
||||||||| |||||||| ||| | ||||| || | ||||| |||||| |||| ||||||||||| ||||||||||||| ||||| ||||| |||| |
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|
| T |
39737483 |
aatgaaggtaccagcaaatccaacacttcaaaattagtcagcatagactctgaagaatttgatgctatggtagatgaggatgtcattgcggcaattgaca |
39737582 |
T |
|
| Q |
371 |
aagttttatccgaagggaataccatttcattacaatttcaacattctgttcaaggacaagaat |
433 |
Q |
| |
|
||||||||| ||||||| ||| |||| ||| ||| || |||||||| ||||||| ||||| |
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| T |
39737583 |
gagttttatcggaagggattactctttccttaaaatcccagcattctgtccaaggacgagaat |
39737645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 387
Target Start/End: Complemental strand, 39846812 - 39846749
Alignment:
| Q |
324 |
agatattgatgctatgatagatgaggatgttattgctgcaatcgacaaagttttatccgaaggg |
387 |
Q |
| |
|
|||| |||||| |||| |||||| ||||||||||| |||||||||||||||| |||| |||||| |
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|
| T |
39846812 |
agatcttgatgatatggtagatgtggatgttattggtgcaatcgacaaagttatatcagaaggg |
39846749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 107 - 159
Target Start/End: Original strand, 39737484 - 39737536
Alignment:
| Q |
107 |
atgaaggtaccagcaaagccaacaattcaaaattcgtcggcatagactttgaa |
159 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||| ||| ||||||||| |||| |
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|
| T |
39737484 |
atgaaggtaccagcaaatccaacacttcaaaattagtcagcatagactctgaa |
39737536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 39737405 - 39737477
Alignment:
| Q |
16 |
gaggagcaaaacaaaaacagtttagccgaagaaacaaatgttgataaaaa---tgaagctcaacagtcaaaag |
85 |
Q |
| |
|
|||||| ||||| |||| | | || ||||||||||||||||||| ||||| |||||||||||||||||||| |
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|
| T |
39737405 |
gaggagaaaaacgaaaatattatatccgaagaaacaaatgttgacaaaaacattgaagctcaacagtcaaaag |
39737477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 357
Target Start/End: Original strand, 39862049 - 39862082
Alignment:
| Q |
324 |
agatattgatgctatgatagatgaggatgttatt |
357 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| |
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| T |
39862049 |
agatattgatactatgatagatgaggatgttatt |
39862082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 323 - 429
Target Start/End: Complemental strand, 32827043 - 32826937
Alignment:
| Q |
323 |
aagatattgatgctatgatagatgaggatgttattgctgcaatcgacaaagttttatccgaagggaataccatttcattacaatttcaacattctgttca |
422 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||| |||||||||| |||| |||||||| ||||||| ||| || | ||| ||| || |||||||| || |
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|
| T |
32827043 |
aagaaattgatgctatgatagatgaggacgttgttgctgcaattgacagagttttattagaagggattacttttcccttaaaatctcggcattctgtaca |
32826944 |
T |
|
| Q |
423 |
aggacaa |
429 |
Q |
| |
|
||||||| |
|
|
| T |
32826943 |
aggacaa |
32826937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 32827097 - 32827024
Alignment:
| Q |
104 |
atgatgaaggtaccagcaaagccaacaattcaaaattcgtcggcatagactttgaaaaaattaatgatatgata |
177 |
Q |
| |
|
||||| ||||||||||||||| ||||| |||||| || ||| ||| |||||||||| ||||| ||| ||||||| |
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|
| T |
32827097 |
atgattaaggtaccagcaaaggcaacacttcaaagtttgtcagcaaagactttgaagaaattgatgctatgata |
32827024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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