View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20570_high_2 (Length: 632)
Name: NF20570_high_2
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20570_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 521; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 28 - 588
Target Start/End: Complemental strand, 28606805 - 28606245
Alignment:
| Q |
28 |
atataaagagagttggtatatcatgggtaaagtcagaaacttattttgatttcataaaggatgcattgaaacaattggttgaatgtagaagagttctcaa |
127 |
Q |
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| T |
28606805 |
atataaagagagttggtatatcatgggtaaagtcagaaacttattttgatttcataaaggatgcattgaaacaattggttgaatgtagaagagttctcaa |
28606706 |
T |
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| Q |
128 |
atgggcttatgtatatggatactatcttcctgagaatgaaaatgctaagattgagttttttgagcacatagaaagcatagctcaggttgctttcgagcgc |
227 |
Q |
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| T |
28606705 |
atgggcttatgtatatggatactatcttcctgagaatgaaaatgctaagattgagttttttgagcacatagaaagcatagctcaggttgctttggagcgc |
28606606 |
T |
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| Q |
228 |
cttcgtcgttgtgcagaaagtgaattaagaaaggttctaaatgatgggtcagaggaagaatttcgtgattttcaggtgaagctaatcaccctgactagcg |
327 |
Q |
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| T |
28606605 |
cttcgtcattgtgcagaaagtgaattaagaaaggttctaaacgatgggtcagaggaagaattttgtgattttcaggtgaagctaaccaccctcactaggg |
28606506 |
T |
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| Q |
328 |
tggctaaaagttattttatgaatttggttagtggattagagaatggtttagatgttgtgtgtgtgaaaaactacactggggtgaaaagggtgttaagtga |
427 |
Q |
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| T |
28606505 |
tggctaaaagttattttatgaatttggttagtggattagagaatggtttagatgttgtgtgtgtgaaaaactacactggtgtgaaaagggtgttaagtga |
28606406 |
T |
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| Q |
428 |
aattggtgacagctcatataagaagctgaatactggaaggtgaagcagaatcaacattatggatattatggttgaacaatcagataatgatacttgaaga |
527 |
Q |
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| T |
28606405 |
aattggtgacaactcatataagaagctgaatacttgaaggtgaagcagaatcaacattatggatattatggttgaacaatcagataatgatacttgaaga |
28606306 |
T |
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| Q |
528 |
acaacttttcatggtttgtcattgtgtatttggttcaaactgtattttgatccttaggcaa |
588 |
Q |
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| T |
28606305 |
acaacttttcatggtttgtcattgtgtatttggttcaaactgtattttgatccttaggcaa |
28606245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 82 - 400
Target Start/End: Complemental strand, 28603562 - 28603241
Alignment:
| Q |
82 |
taaaggatgcattgaaacaattggttgaatgtagaagagttctcaaatgggcttatgtatatggatactatcttcctgagaatgaaaatgctaagattga |
181 |
Q |
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| T |
28603562 |
taaaggatgcattgaaacacatagttgaatgcagaagaattctcagatggagttatgtatatggatactatcttcccgaggatgaaaatgctaagattga |
28603463 |
T |
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| Q |
182 |
gttttttgagcacatagaaagcatagctcaggttgctttcgagcgccttcgtcgttgtgcagaaagtgaattaagaaag---gttctaaatgatgggtca |
278 |
Q |
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| T |
28603462 |
gttttttgatcacatccaaagcatagctcaagttgttttggataggcttcatcattttgcagaaaatggattaagaaagcaacttctacataatgggtcc |
28603363 |
T |
|
| Q |
279 |
gaggaagaatttcgtgattttcaggtgaagctaatcaccctgactagcgtggctaaaagttattttatgaatttggttagtggattagagaatggtttag |
378 |
Q |
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| T |
28603362 |
gaggaagaattttgtgattttcggacgaagctaaccactagggctcgggtggctaaaagttatttcatgaatttggtaaaagaactagataacggtttag |
28603263 |
T |
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| Q |
379 |
atgttgtgtgtgtgaaaaacta |
400 |
Q |
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| T |
28603262 |
aggtagtgtgtgtgaaaaacta |
28603241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 84 - 190
Target Start/End: Complemental strand, 28602220 - 28602114
Alignment:
| Q |
84 |
aaggatgcattgaaacaattggttgaatgtagaagagttctcaaatgggcttatgtatatggatactatcttcctgagaatgaaaatgctaagattgagt |
183 |
Q |
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| T |
28602220 |
aaggatgcatggaaacaggtaattgaatgtcgaagagttatgagatggagttatgtatatgaatactatcttcccgaggatgaaaatgctaagattgagt |
28602121 |
T |
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| Q |
184 |
tttttga |
190 |
Q |
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| T |
28602120 |
tttttga |
28602114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 398
Target Start/End: Original strand, 19056440 - 19056497
Alignment:
| Q |
341 |
ttttatgaatttggttagtggattagagaatggtttagatgttgtgtgtgtgaaaaac |
398 |
Q |
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| T |
19056440 |
ttttataaattttgttaatgaattaaagaatggtttagacggtgtgtgtgtgaaaaac |
19056497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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