View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20570_high_37 (Length: 304)

Name: NF20570_high_37
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20570_high_37
NF20570_high_37
[»] chr8 (3 HSPs)
chr8 (140-304)||(42991502-42991666)
chr8 (150-286)||(35018213-35018349)
chr8 (16-77)||(42993585-42993643)
[»] chr3 (2 HSPs)
chr3 (102-304)||(38213792-38214001)
chr3 (102-304)||(38218011-38218220)


Alignment Details
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 140 - 304
Target Start/End: Complemental strand, 42991666 - 42991502
Alignment:
Q  140 ccttgaacgcctacactcagcaggaataccttgtggaaatcgcttaagatcgttgcagtaattatatatcatgaaatacttctgaacccatctcaatctt 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42991666 ccttgaacgcctacactcagcaggaataccttgtggaaatcgcttaagatcgttgcagtaattatatatcatgaaatacttctgaacccatctcaatctt 42991567  T
Q  240 cttctaccataagcatcaagctcattgctttgcaatgcagaatcagagaaggaagtggaagagac 304  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  42991566 cttctaccataagcatcaagctcgttgctctgcaatgcagaatcagagaaggaagtggaagagac 42991502  T

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Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 150 - 286
Target Start/End: Complemental strand, 35018349 - 35018213
Alignment:
Q  150 ctacactcagcaggaataccttgtggaaatcgcttaagatcgttgcagtaattatatatcatgaaatacttctgaacccatctcaatcttcttctaccat 249  Q
    ||||||||| |||||| ||||||||| |||||||||||||| || || || ||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  35018349 ctacactcaacaggaacaccttgtgggaatcgcttaagatcattacaatagttataaatcatgaaatacttttgaacccatctcaatcttcttctaccat 35018250  T
Q  250 aagcatcaagctcattgctttgcaatgcagaatcaga 286  Q
    ||||||||||||||||  ||||| || ||| ||||||    
T  35018249 aagcatcaagctcatttatttgccattcagcatcaga 35018213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 42993643 - 42993585
Alignment:
Q  16 atacagaggaagatagtaaatcaaagaatcataataataaattaaaacaacggcaaacaaat 77  Q
    |||||||||||||||||||||||||||||||||   |||||||||||||||  |||||||||    
T  42993643 atacagaggaagatagtaaatcaaagaatcata---ataaattaaaacaacaacaaacaaat 42993585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 102 - 304
Target Start/End: Original strand, 38213792 - 38214001
Alignment:
Q  102 taagatggctattatacgttcttcatcat------ctc-tcagaaccttgaacgcctacactcagcaggaataccttgtggaaatcgcttaagatcgttg 194  Q
    |||||||||||||||| ||||||||||||      ||| ||||||||||| |||| ||||||||||||||||||||| ||| ||||||||||||||||||    
T  38213792 taagatggctattatatgttcttcatcattgatctctcatcagaaccttggacgcttacactcagcaggaataccttctgggaatcgcttaagatcgttg 38213891  T
Q  195 cagtaattatatatcatgaaatacttctgaacccatctcaatcttcttctaccataagcatcaagctcattgctttgcaatgcagaatcagagaaggaag 294  Q
    ||||||||||| ||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38213892 cagtaattatagatcataaagtatttctgaacccatctcaatcttcttctaccataagcatcaagctcattgctttgcaatgcagaatcagagaaggaag 38213991  T
Q  295 tggaagagac 304  Q
    ||||||||||    
T  38213992 tggaagagac 38214001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 102 - 304
Target Start/End: Original strand, 38218011 - 38218220
Alignment:
Q  102 taagatggctattatacgttcttcatcat------ctc-tcagaaccttgaacgcctacactcagcaggaataccttgtggaaatcgcttaagatcgttg 194  Q
    |||||||||||||||| ||||||||||||      ||| ||||||||||| |||| ||||||||||||||||||||| ||| ||||||||||||||||||    
T  38218011 taagatggctattatatgttcttcatcattgatctctcatcagaaccttggacgcttacactcagcaggaataccttctgggaatcgcttaagatcgttg 38218110  T
Q  195 cagtaattatatatcatgaaatacttctgaacccatctcaatcttcttctaccataagcatcaagctcattgctttgcaatgcagaatcagagaaggaag 294  Q
    ||||||||||| ||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38218111 cagtaattatagatcataaagtatttctgaacccatctcaatcttcttctaccataagcatcaagctcattgctttgcaatgcagaatcagagaaggaag 38218210  T
Q  295 tggaagagac 304  Q
    ||||||||||    
T  38218211 tggaagagac 38218220  T

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