View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20570_high_41 (Length: 289)
Name: NF20570_high_41
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20570_high_41 |
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| [»] chr2 (1 HSPs) |
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| [»] chr5 (3 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 16 - 289
Target Start/End: Complemental strand, 2433808 - 2433534
Alignment:
| Q |
16 |
acttcagtcatatccaaattttcatgagtaattccatagggaagtccccaatcaaaatagtacaacaattgagcaagaggaaattctaaattaggttcag |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2433808 |
acttcagtcatatccaaattttcatgagtaattccatagggaagtccccaatcaaaatagtacaacaattgagcaagaggaaattctaaattaggttcag |
2433709 |
T |
|
| Q |
116 |
caaatgtgattcctggacatattctccttcctgcaccaaaaggtatgtactc-aaattagaccctttgtaatcaactagacaatccatgaacctctcagg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2433708 |
caaatgtgattcctggacatattctccttcctgcaccaaaaggtatgtactcaaaattagaccctttgtaatcaactagacaatccatgaacctctcagg |
2433609 |
T |
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| Q |
215 |
ataaaacttttctccttccctccaatacttttggtctcttcctattgcccatccattcacaaacacttgtgttcc |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2433608 |
ataaaacttttctccttccctccaatacttttggtctcttcctattgcccatccattcacaaacacttgtgttcc |
2433534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 121; Significance: 5e-62; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 41654871 - 41654599
Alignment:
| Q |
18 |
ttcagtcatatccaaattttcatgagtaattccatagggaagtccccaatcaaaatagtacaacaattgagcaagaggaaattctaaattaggttcagca |
117 |
Q |
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||||||||| || |||||||||||||| ||||| |||| ||| |||||||||| | |||| ||| || |||||||||| ||||| | ||| | ||||| |
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| T |
41654871 |
ttcagtcatgtcaaaattttcatgagtggttccagaggggagtttccaatcaaaagaatacagcaactgtgcaagaggaagttctatactagatgcagca |
41654772 |
T |
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| Q |
118 |
aatgtgattcctggacatattctccttcctgcaccaaaaggtatgtactcaaa-ttagaccctttgtaatcaactagacaatccatgaacctctcaggat |
216 |
Q |
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|| | |||||| ||||| |||||| |||||||||||||||||||| ||||||| ||||||||| || |||||| | | |||||| ||||||||| |||| |
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| T |
41654771 |
aaagagattccaggacacattctctttcctgcaccaaaaggtatgaactcaaaattagaccctctgaaatcaattgaagaatccaagaacctctctggat |
41654672 |
T |
|
| Q |
217 |
aaaacttttctccttccctccaatacttttggtctcttcctattgcccatccattcacaaacacttgtgttcc |
289 |
Q |
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|||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
41654671 |
aaaacttttctccttcaatccaatacttttggtctcttccaattgcccatgcattcacaaacacttgtgttcc |
41654599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 41647336 - 41647064
Alignment:
| Q |
18 |
ttcagtcatatccaaattttcatgagtaattccatagggaagtccccaatcaaaatagtacaacaattgagcaagaggaaattctaaattaggttcagca |
117 |
Q |
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||||||||| || |||||||||||||| ||||| |||| ||| |||||||||| | |||| ||| || |||||||||| ||||| | ||| | ||||| |
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| T |
41647336 |
ttcagtcatgtcaaaattttcatgagtggttccagaggggagtttccaatcaaaagaatacagcaactgtgcaagaggaagttctatactagatgcagca |
41647237 |
T |
|
| Q |
118 |
aatgtgattcctggacatattctccttcctgcaccaaaaggtatgtactcaaa-ttagaccctttgtaatcaactagacaatccatgaacctctcaggat |
216 |
Q |
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|| | |||||| ||||| |||||| |||||||||||||||||||| ||||||| ||||||||| || ||| || | || |||||| ||||||||| |||| |
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| T |
41647236 |
aaagagattccaggacacattctctttcctgcaccaaaaggtatgaactcaaaattagaccctctgaaattaattggagaatccaagaacctctctggat |
41647137 |
T |
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| Q |
217 |
aaaacttttctccttccctccaatacttttggtctcttcctattgcccatccattcacaaacacttgtgttcc |
289 |
Q |
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|||||||||||||||| ||||||| |||| ||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
41647136 |
aaaacttttctccttcaatccaatatttttcgtctcttccaattgcccatgaattcacaaacacttgtgttcc |
41647064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 63 - 289
Target Start/End: Original strand, 41620697 - 41620924
Alignment:
| Q |
63 |
ccaatcaaaatagtacaacaattgagcaagaggaaattctaaattaggttcagcaaatgtgattcctggacatattctccttcctgcaccaaaaggtatg |
162 |
Q |
| |
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||||||||||||| | ||||| || |||||||||| ||||| ||||| |||||| || || ||||| |||||| |||||||||||||||||| | |
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| T |
41620697 |
ccaatcaaaatagaataacaactgtgcaagaggaagttctatggtaggtgtagcaaacaaaatgccaggacacattctctttcctgcaccaaaaggtaag |
41620796 |
T |
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| Q |
163 |
tactcaaa-ttagaccctttgtaatcaactagacaatccatgaacctctcaggataaaacttttctccttccctccaatacttttggtctcttcctattg |
261 |
Q |
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| ||||| || || ||||||||||||| | || |||||| ||||||||| ||||||||||| ||||| || ||||||| |||||||||||| | |||| |
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| T |
41620797 |
aaatcaaaattggatcctttgtaatcaattggagaatccaagaacctctctggataaaacttgtctccatcactccaatttttttggtctcttgcaattg |
41620896 |
T |
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| Q |
262 |
cccatccattcacaaacacttgtgttcc |
289 |
Q |
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||||| |||||| ||||| |||||||| |
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| T |
41620897 |
cccatgtattcactaacacgtgtgttcc |
41620924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 17 - 289
Target Start/End: Original strand, 12438179 - 12438452
Alignment:
| Q |
17 |
cttcagtcatatccaaattttcatgagtaattccatagggaagtccccaatcaaaatagtacaacaattgagcaagaggaaattctaaattaggttcagc |
116 |
Q |
| |
|
|||||||||| || |||||||||||| || ||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||| | | | ||| || |
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| T |
12438179 |
cttcagtcatgtctaaattttcatgactagttccagagggaagtccccaatcaaaatagtacaacaactgagccagaggaaattccataccaacttcggc |
12438278 |
T |
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| Q |
117 |
aaatgtgattcctggacatattctccttcctgcaccaaaaggtatgtactc-aaattagaccctttgtaatcaactagacaatccatgaacctctcagga |
215 |
Q |
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|| ||| || ||||| ||||| ||||| |||||||||||||| |||| |||||||||||||||||||||| | ||||||| || || ||||||||| |
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| T |
12438279 |
gaacaagatgccgggacacattcttcttccagcaccaaaaggtataaactcgaaattagaccctttgtaatcaattggacaatcaataaatctctcagga |
12438378 |
T |
|
| Q |
216 |
taaaacttttctccttccctccaatacttttggtctcttcctattgcccatccattcacaaacacttgtgttcc |
289 |
Q |
| |
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| ||||||||||||||| ||||||||||| |||||||||| ||||||||| ||||||||| |||||||||||| |
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| T |
12438379 |
ttaaacttttctccttcattccaatactttgggtctcttccaattgcccatgcattcacaagcacttgtgttcc |
12438452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 12636975 - 12637029
Alignment:
| Q |
116 |
caaatgtgattcctggacatattctccttcctgcaccaaaaggtatgtactcaaa |
170 |
Q |
| |
|
|||||||||| ||||| |||||||| ||||||||||||||||| ||||||||||| |
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| T |
12636975 |
caaatgtgatgcctgggcatattcttcttcctgcaccaaaaggaatgtactcaaa |
12637029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 271
Target Start/End: Original strand, 12609879 - 12610035
Alignment:
| Q |
116 |
caaatgtgattcctggacatattctccttcctgcaccaaaaggtatgtactc-aaattagaccctttgtaatcaactaga-caatccatgaacctctcag |
213 |
Q |
| |
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|||||||| | |||||||||||||| ||||| |||||||| || |||||||| |||||| ||||||||| |||| |||| | | | ||||| ||||| | |
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| T |
12609879 |
caaatgtgctacctggacatattcttcttccagcaccaaagggaatgtactcaaaattattccctttgtagtcaa-tagagctaccgatgaatctctccg |
12609977 |
T |
|
| Q |
214 |
gataaaacttttctccttccctccaatacttttggtctcttcctattgcccatccatt |
271 |
Q |
| |
|
|||||||||| ||| ||| |||| |||||| | |||||||| || |||||| |||| |
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|
| T |
12609978 |
gataaaacttctctggttcagtccagtactttggatctcttccaatcgcccatgcatt |
12610035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 23145894 - 23145948
Alignment:
| Q |
116 |
caaatgtgattcctggacatattctccttcctgcaccaaaaggtatgtactcaaa |
170 |
Q |
| |
|
|||||||| | |||||||||||||| ||||| ||||||||||| ||||||||||| |
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|
| T |
23145894 |
caaatgtgctccctggacatattcttcttccagcaccaaaaggaatgtactcaaa |
23145948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 223
Target Start/End: Original strand, 22986265 - 22986359
Alignment:
| Q |
130 |
ggacatattctccttcctgcaccaaaaggtatgtactc-aaattagaccctttgtaatcaactag-acaatccatgaacctctcaggataaaactt |
223 |
Q |
| |
|
||||| ||||||||||| |||||||| || |||||||| ||||||| |||||| |||||| ||| || ||| || |||||||||||||||||||| |
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| T |
22986265 |
ggacaaattctccttccagcaccaaatggaatgtactcaaaattagttcctttgaaatcaa-tagaactatcaataaacctctcaggataaaactt |
22986359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 23036144 - 23036198
Alignment:
| Q |
116 |
caaatgtgattcctggacatattctccttcctgcaccaaaaggtatgtactcaaa |
170 |
Q |
| |
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|||||||| | ||||| |||||||| ||||| ||||||||||| ||||||||||| |
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|
| T |
23036144 |
caaatgtgctccctgggcatattcttcttccggcaccaaaaggaatgtactcaaa |
23036198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 23039015 - 23039067
Alignment:
| Q |
116 |
caaatgtgattcctggacatattctccttcctgcaccaaaaggtatgtactca |
168 |
Q |
| |
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|||||||| | ||||| |||||||| ||||| ||||||||||| ||||||||| |
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| T |
23039015 |
caaatgtgctccctgggcatattcttcttccggcaccaaaaggaatgtactca |
23039067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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