View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20570_high_55 (Length: 255)
Name: NF20570_high_55
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20570_high_55 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 40375382 - 40375176
Alignment:
| Q |
1 |
aatgtttcgtgtgtgaataagaaattactacttgcaactattttatttgtgtaagaagtaatcttgcaatgtcattctcatttaaataacatcatgcttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
40375382 |
aatgtttcgtgtgtgaataagaaattactacttgcaactattttatttgtgtaagaagtaatcttgcaatgtcattctcattttaataacatcatgcttt |
40375283 |
T |
|
| Q |
101 |
aatttggatcgttttcaatgtgttgtgttaacatccttctatatactatgttttttggttaatgaatcttatctacgaaagctttgaatacattttataa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40375282 |
aatttggatcgttttcaatgtgttgtgttaacatccatctatatactatgtttttt-gttgatgaatcttatctacgaaagctttgaatacattttataa |
40375184 |
T |
|
| Q |
201 |
gttgtttg |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
40375183 |
gttgtttg |
40375176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University