View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20570_high_60 (Length: 250)
Name: NF20570_high_60
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20570_high_60 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 2433457 - 2433224
Alignment:
| Q |
1 |
aatcttaaggtttctttaattattgcttttacatatttcagttcttgaagatttatttcatcaatatatcctttgtttccaaagacttgtctaacttctg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2433457 |
aatcttaaggtttctttaattattgcttttacatatttcagttcttgaaaatttatttcatcaatatatcctttgtttccaaagacttgtctaacttctg |
2433358 |
T |
|
| Q |
101 |
cttgagccttttttagcactctagggtttttcatcatttctgaaaaagcccattctaaagttgaagatgttgtttcacttccagcaaaaatgatatcctg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2433357 |
cttgagccttttttagcactctagggtttttcatcatttctgaaaaagcccattctaaagttgaagatgttgtttcacttccagcaaaaatgatatcctg |
2433258 |
T |
|
| Q |
201 |
taccaagtgagtgagatcttatgaagagaaaaat |
234 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
2433257 |
taccaagtgagtgagatcttttgaagagaaaaat |
2433224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 12438529 - 12438728
Alignment:
| Q |
1 |
aatcttaaggtttctttaattattgcttttacatatttcagttcttgaagatttatttcatcaatatatcctttgtttccaaagacttgtctaacttctg |
100 |
Q |
| |
|
|||||||||||||||||||| | |||||||| |||||| ||||||||||||||||||||||||| |||||| ||| |||||| || || |||||||||| |
|
|
| T |
12438529 |
aatcttaaggtttctttaatcactgcttttaaatattttagttcttgaagatttatttcatcaacatatcccttgcttccaacaacatgcctaacttctg |
12438628 |
T |
|
| Q |
101 |
cttgagccttttttagcactctagggtttttcatcatttctgaaaaagcccattctaaagttgaagatgttgtttcacttccagcaaaaatgatatcctg |
200 |
Q |
| |
|
||||||||||||||| ||||| || ||||||| |||||||||||| |||||||||||||||| || || ||| ||||||||||||||| |||||||| |
|
|
| T |
12438629 |
cttgagccttttttaatactcttggatttttcaacatttctgaaaaggcccattctaaagttgtagctgatgtcccacttccagcaaaaaatatatcctg |
12438728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 3 - 183
Target Start/End: Complemental strand, 41654523 - 41654343
Alignment:
| Q |
3 |
tcttaaggtttctttaattattgcttttacatatttcagttcttgaagatttatttcatcaatatatcctttgtttccaaagacttgtctaacttctgct |
102 |
Q |
| |
|
|||||| ||||||||||| | |||||||| |||||||||||||||||||| | ||||||||| ||||||| || | ||||| |||||||||||||| || |
|
|
| T |
41654523 |
tcttaatgtttctttaataactgcttttagatatttcagttcttgaagatctttttcatcaacatatcctctgctaccaaaagcttgtctaacttcttct |
41654424 |
T |
|
| Q |
103 |
tgagccttttttagcactctagggtttttcatcatttctgaaaaagcccattctaaagttgaagatgttgtttcacttcca |
183 |
Q |
| |
|
||||||||||| | |||||||||||||||| ||||||||| |||||||||| || |||| | |||| ||| ||||||||| |
|
|
| T |
41654423 |
tgagcctttttcattactctagggtttttcagcatttctgagaaagcccattgtatagttaaggatgatgtctcacttcca |
41654343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 41646990 - 41646837
Alignment:
| Q |
1 |
aatcttaaggtttctttaattattgcttttacatatttcagttcttgaagatttatttcatcaatatatcctttgtttccaaagacttgtctaacttctg |
100 |
Q |
| |
|
|||||||||||||||||||| | |||||||| | ||||||||| |||||||| | ||||||||| ||||||| || | ||||| |||||||||||||| |
|
|
| T |
41646990 |
aatcttaaggtttctttaataactgcttttagaaatttcagtttttgaagatctttttcatcaacatatcctctgctaccaaaagcttgtctaacttctt |
41646891 |
T |
|
| Q |
101 |
cttgagccttttttagcactctagggtttttcatcatttctgaaaaagcccatt |
154 |
Q |
| |
|
||||||||||||| | |||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
41646890 |
cttgagcctttttcattactctagggtttttcagcatttctgagaaagcccatt |
41646837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 200
Target Start/End: Original strand, 41621004 - 41621197
Alignment:
| Q |
7 |
aaggtttctttaattattgcttttacatatttcagttcttgaagatttatttcatcaatatatcctttgtttccaaagacttgtctaacttctgcttgag |
106 |
Q |
| |
|
|||||||||||||| | |||||||| | |||||||||||| ||||| | ||||||||| ||||||| || | |||| | |||||||||||| |||||| |
|
|
| T |
41621004 |
aaggtttctttaataactgcttttagaaatttcagttcttcaagatctttttcatcaacatatcctctgctaacaaaagcatgtctaacttcttcttgag |
41621103 |
T |
|
| Q |
107 |
ccttttttagcactctagggtttttcatcatttctgaaaaagcccattctaaagttgaagatgttgtttcacttccagcaaaaatgatatcctg |
200 |
Q |
| |
|
|| |||| | | |||||||||||||| ||||||||| || |||||||| | ||||| || || || ||||||||| ||| ||| |||||||| |
|
|
| T |
41621104 |
cccttttcaatattctagggtttttcagcatttctgagaaggcccattccatagttgtagttgatggctcacttccaccaataataatatcctg |
41621197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 227
Target Start/End: Original strand, 5022265 - 5022493
Alignment:
| Q |
3 |
tcttaaggtttctttaattattgcttttacatatttcagttcttgaagatttatttcatcaatatatcctttgtttccaaagacttgtctaacttctgct |
102 |
Q |
| |
|
|||||||||||||||||| | | |||||| | |||||| ||||||||||| | |||||||| ||||||| | | ||| || |||||||||||| || |
|
|
| T |
5022265 |
tcttaaggtttctttaatcacttcttttagaaatttcaattcttgaagatccacttcatcaacatatcctgttccactaaaaacctgtctaacttcttct |
5022364 |
T |
|
| Q |
103 |
tgagccttttttagcactctagggtttttcatcatttctgaaaaa----gcccattctaaagttgaagatgttgtttcacttccagcaaaaatgatatcc |
198 |
Q |
| |
|
|||||| | | || ||||| |||||| ||| || |||||| ||| |||||||| ||||||| ||||| ||| ||||||||| ||| || |||||| |
|
|
| T |
5022365 |
tgagccctaatcagtactcttgggtttctcagcaattctgagaaagcccgcccattccaaagttgtagatgatgtctcacttccaccaataagcatatcc |
5022464 |
T |
|
| Q |
199 |
tgtaccaagtgagtgagatcttatgaaga |
227 |
Q |
| |
|
|| |||| | |||||||||| ||||||| |
|
|
| T |
5022465 |
tgcaccatgatagtgagatctcatgaaga |
5022493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University