View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20570_high_62 (Length: 248)

Name: NF20570_high_62
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20570_high_62
NF20570_high_62
[»] chr5 (9 HSPs)
chr5 (3-237)||(3040322-3040553)
chr5 (1-77)||(30735381-30735457)
chr5 (9-77)||(25493791-25493859)
chr5 (7-77)||(40519151-40519221)
chr5 (7-61)||(30700936-30700990)
chr5 (7-77)||(30071743-30071813)
chr5 (8-64)||(20359896-20359952)
chr5 (7-57)||(24402035-24402085)
chr5 (32-72)||(21259195-21259235)
[»] chr2 (12 HSPs)
chr2 (1-77)||(20142940-20143016)
chr2 (1-77)||(13716770-13716846)
chr2 (7-72)||(32976088-32976153)
chr2 (7-74)||(38320266-38320333)
chr2 (10-77)||(37899572-37899639)
chr2 (7-77)||(37714395-37714465)
chr2 (12-74)||(31645168-31645231)
chr2 (7-77)||(19945790-19945860)
chr2 (7-61)||(35457389-35457442)
chr2 (7-63)||(4434283-4434339)
chr2 (7-65)||(27407406-27407464)
chr2 (7-59)||(3167886-3167938)
[»] chr1 (13 HSPs)
chr1 (7-76)||(10061565-10061634)
chr1 (7-73)||(35149730-35149796)
chr1 (7-77)||(35412998-35413068)
chr1 (7-77)||(48852615-48852685)
chr1 (1-77)||(21540046-21540122)
chr1 (7-65)||(26469928-26469986)
chr1 (7-61)||(49313595-49313649)
chr1 (7-77)||(43537211-43537284)
chr1 (1-77)||(11469995-11470072)
chr1 (7-72)||(29657341-29657406)
chr1 (7-77)||(23906672-23906742)
chr1 (7-44)||(13085107-13085144)
chr1 (45-77)||(13085134-13085166)
[»] chr8 (7 HSPs)
chr8 (7-77)||(29543678-29543748)
chr8 (1-77)||(38585148-38585224)
chr8 (7-77)||(24068182-24068252)
chr8 (7-61)||(29414370-29414424)
chr8 (7-77)||(36947291-36947363)
chr8 (33-77)||(35393712-35393756)
chr8 (25-77)||(5718539-5718591)
[»] chr7 (9 HSPs)
chr7 (7-72)||(23611815-23611880)
chr7 (7-77)||(8123663-8123733)
chr7 (7-72)||(46297590-46297655)
chr7 (8-72)||(20125567-20125631)
chr7 (2-61)||(44600996-44601055)
chr7 (7-44)||(46413812-46413849)
chr7 (7-77)||(21882835-21882905)
chr7 (7-77)||(22631452-22631522)
chr7 (7-83)||(23730569-23730645)
[»] chr6 (7 HSPs)
chr6 (7-72)||(32871819-32871884)
chr6 (1-63)||(34713487-34713549)
chr6 (1-77)||(2130552-2130628)
chr6 (7-77)||(28867157-28867227)
chr6 (7-77)||(6784768-6784838)
chr6 (7-56)||(6519233-6519282)
chr6 (7-78)||(11301807-11301878)
[»] chr3 (9 HSPs)
chr3 (7-73)||(10593526-10593592)
chr3 (7-77)||(45853000-45853070)
chr3 (7-72)||(1632786-1632850)
chr3 (7-77)||(34905818-34905888)
chr3 (1-44)||(18272023-18272066)
chr3 (1-44)||(26442954-26442997)
chr3 (7-57)||(2671895-2671945)
chr3 (7-77)||(48897746-48897816)
chr3 (1-41)||(1714038-1714078)
[»] chr4 (12 HSPs)
chr4 (2-72)||(41545392-41545462)
chr4 (1-77)||(19482490-19482566)
chr4 (7-74)||(51304365-51304431)
chr4 (7-77)||(24060548-24060618)
chr4 (7-76)||(42108752-42108821)
chr4 (7-65)||(25817649-25817707)
chr4 (7-64)||(5288507-5288564)
chr4 (7-44)||(29065344-29065381)
chr4 (7-77)||(37762777-37762849)
chr4 (7-62)||(13218442-13218497)
chr4 (12-70)||(41485716-41485774)
chr4 (7-83)||(42504260-42504333)
[»] scaffold0018 (1 HSPs)
scaffold0018 (7-75)||(69991-70059)
[»] scaffold0122 (1 HSPs)
scaffold0122 (7-77)||(18606-18676)


Alignment Details
Target: chr5 (Bit Score: 141; Significance: 5e-74; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 3 - 237
Target Start/End: Original strand, 3040322 - 3040553
Alignment:
Q  3 ccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaatcttcatagtgatatgcttatgtgga 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||    
T  3040322 ccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaatgctcatagtgatatgcttaagtgga 3040421  T
Q  103 tggagttaaaagtaaattcattgtaacggtctctatcatctannnnnnnnnnnnnnnnnnggcaatgcttgcctattttcggcacaagtgactttgtaac 202  Q
    ||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||||||||||| |||||||||||||    
T  3040422 tggagttaaaagtaaattcattgtaacggtctctatcatcta-tttttttcttattttttggcaatgcttgcctattttcggcacaggtgactttgtaac 3040520  T
Q  203 tgttttgtgatgtttttctctcgtaatacgttttg 237  Q
    |||||||||  || |||||||||||||| ||||||    
T  3040521 tgttttgtg--gtgtttctctcgtaatatgttttg 3040553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 30735381 - 30735457
Alignment:
Q  1 cgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 77  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||| |||||| ||||    
T  30735381 cgccaaataacaaatttaattgattgagacattttcttgatatattcttaataaaaactatctagataaatagcaat 30735457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 25493859 - 25493791
Alignment:
Q  9 aacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 77  Q
    ||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||| |||||| ||||    
T  25493859 aacaaatttaattggctgagacattttcttgatcaattcttgataaaaactctctagataaatagcaat 25493791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 40519221 - 40519151
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 77  Q
    |||||||||||||||| ||||||| | ||||| |||||||||||||||||||||||||| |||||| ||||    
T  40519221 ataacaaatttaattggttgagacttattcttaataaattcttgataaaaactctctagataaatagcaat 40519151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 30700936 - 30700990
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactct 61  Q
    |||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||    
T  30700936 ataacaaatttaattgattgagacattttcttaatatatttttgataaaaactct 30700990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 30071813 - 30071743
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 77  Q
    |||| ||||||||||| ||||||| |||||||| |||||||| |||||||||||| ||| |||||| ||||    
T  30071813 ataataaatttaattggttgagaccttttcttgttaaattctagataaaaactctttagataaatagcaat 30071743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 20359952 - 20359896
Alignment:
Q  8 taacaaatttaattgattgagacattttcttgataaattcttgataaaaactctcta 64  Q
    ||||| ||||||||||  |||||||||||||||| |||||||||||||| |||||||    
T  20359952 taacagatttaattgaccgagacattttcttgatcaattcttgataaaatctctcta 20359896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 24402085 - 24402035
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaa 57  Q
    |||||||||||| ||| ||||||  ||||||||||||||||||||||||||    
T  24402085 ataacaaatttatttggttgagatcttttcttgataaattcttgataaaaa 24402035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 21259235 - 21259195
Alignment:
Q  32 ttttcttgataaattcttgataaaaactctctaggtaaata 72  Q
    ||||||| || ||||||||||||||||||||||| ||||||    
T  21259235 ttttctttatcaattcttgataaaaactctctagataaata 21259195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 20143016 - 20142940
Alignment:
Q  1 cgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 77  Q
    ||||| |||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  20143016 cgccaaataataaatttaattggttgagactttttcttgataaattcttgataaaaactctctagataaataacaat 20142940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 13716770 - 13716846
Alignment:
Q  1 cgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 77  Q
    ||||| || ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||| ||||    
T  13716770 cgccaaatcacaaatttaattggttgagactttttcttgataaattcttgataaaaactctctagataaatagcaat 13716846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 32976088 - 32976153
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaata 72  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||| ||||||    
T  32976088 ataacaaatttaattggttgagacattttcttgatcaattcttgataaaatctctctagataaata 32976153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 38320266 - 38320333
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataac 74  Q
    |||||||||||||||| |||| |  |||||||||||||||||||||||||||||||||| ||||||||    
T  38320266 ataacaaatttaattggttgaaaacttttcttgataaattcttgataaaaactctctagataaataac 38320333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 37899572 - 37899639
Alignment:
Q  10 acaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 77  Q
    ||||||||||||| |||| || ||||||||||||||| |||||||||||||||||| |||||| ||||    
T  37899572 acaaatttaattggttgaaaccttttcttgataaatttttgataaaaactctctagataaatagcaat 37899639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 37714465 - 37714395
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 77  Q
    |||||||||||||||| |||| || ||||||||||||||  |||||||||||||||||| |||||| ||||    
T  37714465 ataacaaatttaattggttgataccttttcttgataaatcattgataaaaactctctagataaatagcaat 37714395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 31645168 - 31645231
Alignment:
Q  12 aaatttaattgattgagacattttctt-gataaattcttgataaaaactctctaggtaaataac 74  Q
    ||||||||||| || ||||||||| || ||||||||||||||||||||||||||| ||||||||    
T  31645168 aaatttaattggttaagacattttttttgataaattcttgataaaaactctctagataaataac 31645231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 19945790 - 19945860
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 77  Q
    |||||||||||||||||  |||||||||| || |||||||||| ||||||||||||||  |||||| ||||    
T  19945790 ataacaaatttaattgaccgagacatttttttaataaattcttaataaaaactctctaaataaatagcaat 19945860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 35457442 - 35457389
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactct 61  Q
    |||| |||||||||||||||| || ||||||| ||||||||||||||||||||||    
T  35457442 ataataaatttaattgattgaaaccttttctt-ataaattcttgataaaaactct 35457389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 4434339 - 4434283
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctct 63  Q
    ||||||||||||||||| || ||| |||||||||| ||||||| |||||| ||||||    
T  4434339 ataacaaatttaattgactgggaccttttcttgatcaattcttaataaaatctctct 4434283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 27407464 - 27407406
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctag 65  Q
    ||||||||||||||||  ||| |  |||||||||| ||||||||||||| |||||||||    
T  27407464 ataacaaatttaattggctgatatcttttcttgatcaattcttgataaacactctctag 27407406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 3167938 - 3167886
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaact 59  Q
    |||| ||||||||||| ||||||| ||||||| | |||||||| |||||||||    
T  3167938 ataataaatttaattggttgagaccttttcttaacaaattcttaataaaaact 3167886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 10061634 - 10061565
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaa 76  Q
    |||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||| ||||||||||    
T  10061634 ataacaaatttaattggttgagacttttttttgataaattcttgataaaaactctctagataaataacaa 10061565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 35149730 - 35149796
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataa 73  Q
    |||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||| |||||||    
T  35149730 ataacaaatttaattggttaagatattttcttgataaattcttgataaaaactctctagataaataa 35149796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 35413068 - 35412998
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 77  Q
    |||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||| |||||| ||||    
T  35413068 ataacaaatttaattggttgagaccttttcttgataaattattgataaaaactctctagataaatagcaat 35412998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 48852685 - 48852615
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 77  Q
    ||||||||||||||||||| | ||||||| ||||||||||||| ||||||||||||||| |||||||||||    
T  48852685 ataacaaatttaattgattaaaacatttttttgataaattcttaataaaaactctctagataaataacaat 48852615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 21540122 - 21540046
Alignment:
Q  1 cgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 77  Q
    ||||| ||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||  |||||| ||||    
T  21540122 cgccaaataacaaatttaattggctgagacattttcttgataatttcttgataaaaactctctaaataaatagcaat 21540046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 26469986 - 26469928
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctag 65  Q
    |||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  26469986 ataataaatttaatttgttgagacattttcttgataaattcttgataaaaactctctag 26469928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 49313649 - 49313595
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactct 61  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  49313649 ataacaaatttaattaattgagacattttcttgatcaattcttgataaaaactct 49313595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 43537211 - 43537284
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgat---aaaaactctctaggtaaataacaat 77  Q
    ||||||||||||||||  |||||| |||||||||| ||||||||||   ||||||||||||| |||||||||||    
T  43537211 ataacaaatttaattggctgagaccttttcttgattaattcttgataaaaaaaactctctagataaataacaat 43537284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 11470072 - 11469995
Alignment:
Q  1 cgccagataacaaatttaattgattgagacattttcttgataaattcttgat-aaaaactctctaggtaaataacaat 77  Q
    ||||| |||||||||||||||| || ||| ||||||||||||||||||| || |||||||||||   |||||||||||    
T  11470072 cgccaaataacaaatttaattggttaagatattttcttgataaattcttaataaaaaactctcttaataaataacaat 11469995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 29657406 - 29657341
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaata 72  Q
    |||||||||||||||| ||||||| |||||||||  |||| ||||||||| |||||||| ||||||    
T  29657406 ataacaaatttaattggttgagaccttttcttgaccaatttttgataaaatctctctagataaata 29657341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 23906672 - 23906742
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 77  Q
    ||||||||||||||||  ||| || |||||||||| |||||||||||||| || ||||| |||||| ||||    
T  23906672 ataacaaatttaattggctgaaactttttcttgatcaattcttgataaaacctttctagataaatagcaat 23906742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 13085107 - 13085144
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaa 44  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  13085107 ataacaaatttaattgactgagatattttcttgataaa 13085144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Original strand, 13085134 - 13085166
Alignment:
Q  45 ttcttgataaaaactctctaggtaaataacaat 77  Q
    ||||||||||||||||||||| |||||||||||    
T  13085134 ttcttgataaaaactctctagataaataacaat 13085166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 29543678 - 29543748
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 77  Q
    |||||||||||||||| |||||| |||||||||||||||| |||||||||||||||| | |||||||||||    
T  29543678 ataacaaatttaattggttgagatattttcttgataaatttttgataaaaactctcttgataaataacaat 29543748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 38585148 - 38585224
Alignment:
Q  1 cgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 77  Q
    ||||| || |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||  |||||| ||||    
T  38585148 cgccaaatgacaaatttaattaattgaaacattttcttgataaattcttgataaaaactctctaaataaatatcaat 38585224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 24068182 - 24068252
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 77  Q
    ||||||||||||||||  |||||| |||||| ||| |||||||||||||| |||||||| |||||| ||||    
T  24068182 ataacaaatttaattggctgagactttttctcgatcaattcttgataaaatctctctagataaatagcaat 24068252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 29414424 - 29414370
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactct 61  Q
    ||||||||||||||||  ||||||||||||||||| |||| ||||||||||||||    
T  29414424 ataacaaatttaattggctgagacattttcttgatcaatttttgataaaaactct 29414370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 36947291 - 36947363
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgata--aattcttgataaaaactctctaggtaaataacaat 77  Q
    ||||||||||||||||||||| ||||||| ||  ||  |||||||||||||| |||||||| |||||||||||    
T  36947291 ataacaaatttaattgattgatacattttttttttatcaattcttgataaaatctctctagataaataacaat 36947363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 35393756 - 35393712
Alignment:
Q  33 tttcttgataaattcttgataaaaactctctaggtaaataacaat 77  Q
    ||||||||| ||||||||||||||||||||||| |||||| ||||    
T  35393756 tttcttgatcaattcttgataaaaactctctagataaatagcaat 35393712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 5718539 - 5718591
Alignment:
Q  25 tgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 77  Q
    |||||| |||||||||| |||||||||||||| ||||| || |||||| ||||    
T  5718539 tgagaccttttcttgatcaattcttgataaaatctctcaagataaataccaat 5718591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 23611815 - 23611880
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaata 72  Q
    |||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  23611815 ataacaaatttaatttgttgagacattttcttgataaattcttaataaaaactctctagataaata 23611880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 8123733 - 8123663
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 77  Q
    ||||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||||| |||||| ||||    
T  8123733 ataacaaatttaattgactgagacattttcttgatcaattcatgataaaatctctctagataaatagcaat 8123663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 46297655 - 46297590
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaata 72  Q
    |||||||||| || ||  ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  46297655 ataacaaattaaaatggctgagacattttcttgataaattcttgataaaaactctctagataaata 46297590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 20125631 - 20125567
Alignment:
Q  8 taacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaata 72  Q
    |||||||||||||||  ||| ||||||||||||| |||||||||||||| |||||||| ||||||    
T  20125631 taacaaatttaattggctgacacattttcttgatcaattcttgataaaacctctctagataaata 20125567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 44601055 - 44600996
Alignment:
Q  2 gccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactct 61  Q
    |||| ||||||||||||||||||||| ||||||||||   ||||||||||||||||||||    
T  44601055 gccaaataacaaatttaattgattgaaacattttcttatcaaattcttgataaaaactct 44600996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 46413812 - 46413849
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaa 44  Q
    |||||||||||||||| |||||||||||||||||||||    
T  46413812 ataacaaatttaattggttgagacattttcttgataaa 46413849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 21882835 - 21882905
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 77  Q
    ||||||||||||||||  |||||  ||||||| || ||||||| |||||| |||||||| |||||| ||||    
T  21882835 ataacaaatttaattggctgagatcttttcttaatcaattcttcataaaatctctctagataaatagcaat 21882905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 22631522 - 22631452
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 77  Q
    ||||||||||||||||  |||||  |||||||||| ||||||| ||||||  ||| ||| |||||||||||    
T  22631522 ataacaaatttaattggctgagatcttttcttgatcaattcttaataaaatatctttagataaataacaat 22631452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 23730569 - 23730645
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaatcttcat 83  Q
    ||||| |||||||||   ||| || |||||||||| |||||||||||||| |||||| | |||||| |||| |||||    
T  23730569 ataacgaatttaatttgctgaaacgttttcttgatcaattcttgataaaatctctctcgataaatagcaatgttcat 23730645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 32871819 - 32871884
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaata 72  Q
    |||||||||||||||| |||| || |||||||||||||||||||||||||||||||||| ||||||    
T  32871819 ataacaaatttaattggttgaaaccttttcttgataaattcttgataaaaactctctagataaata 32871884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 34713549 - 34713487
Alignment:
Q  1 cgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctct 63  Q
    ||||| |||||||||||||||  |||||||| |||||||||||||||||||||||||||||||    
T  34713549 cgccaaataacaaatttaattagttgagacaatttcttgataaattcttgataaaaactctct 34713487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 2130552 - 2130628
Alignment:
Q  1 cgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 77  Q
    ||||| |||||||||||||||| ||||||  ||||||||||||||| || || |||||||||||| |||||||||||    
T  2130552 cgccaaataacaaatttaattggttgagattttttcttgataaattttttattaaaactctctagataaataacaat 2130628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 28867227 - 28867157
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 77  Q
    ||||||||||||||||||||| || ||||||| || |||||||||||||| |||| ||| |||||||||||    
T  28867227 ataacaaatttaattgattgaaactttttcttaatcaattcttgataaaatctctttagataaataacaat 28867157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 6784768 - 6784838
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 77  Q
    ||||||||||||||||  |||||  |||| |||||||||| |||||||||||||||||| |||||| ||||    
T  6784768 ataacaaatttaattggctgagatcttttattgataaattgttgataaaaactctctagataaatagcaat 6784838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 6519282 - 6519233
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaa 56  Q
    ||||||||||||||||| ||||||||||||||||| |||| |||||||||    
T  6519282 ataacaaatttaattgactgagacattttcttgatcaatttttgataaaa 6519233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 11301878 - 11301807
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaatc 78  Q
    |||||||||| |||||| |||||| ||||| |||| ||||||||||||||| ||||||  |||||| |||||    
T  11301878 ataacaaattcaattgactgagaccttttcatgatcaattcttgataaaaattctctatataaatagcaatc 11301807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 10593526 - 10593592
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataa 73  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||  |||||||    
T  10593526 ataacaaatttaattggttgagacattttctggataaattcttgataaaatctctctaaataaataa 10593592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 45853000 - 45853070
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 77  Q
    |||| ||||||||||| ||||||| |||||||||| |||||||||||||| |||| ||| |||||||||||    
T  45853000 ataataaatttaattggttgagactttttcttgattaattcttgataaaatctctatagataaataacaat 45853070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 1632850 - 1632786
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaata 72  Q
    |||||||||||||||  |||||||||||||||||| |||| |||||||||| ||||||| ||||||    
T  1632850 ataacaaatttaattagttgagacattttcttgat-aatttttgataaaaattctctagataaata 1632786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 34905888 - 34905818
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 77  Q
    ||||||||||||| ||  |||||||||||||| || |||||||||||||| || ||||| |||||| ||||    
T  34905888 ataacaaatttaactggctgagacattttcttaatcaattcttgataaaatctatctagataaatagcaat 34905818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 18272023 - 18272066
Alignment:
Q  1 cgccagataacaaatttaattgattgagacattttcttgataaa 44  Q
    ||||| |||||||||||||||| |||||| ||||||||||||||    
T  18272023 cgccaaataacaaatttaattggttgagatattttcttgataaa 18272066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 26442997 - 26442954
Alignment:
Q  1 cgccagataacaaatttaattgattgagacattttcttgataaa 44  Q
    ||||| |||||||||||||||| ||||||| |||||||||||||    
T  26442997 cgccaaataacaaatttaattggttgagaccttttcttgataaa 26442954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 2671945 - 2671895
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaa 57  Q
    ||||||||||||||||  ||| || |||||||||| |||||||||||||||    
T  2671945 ataacaaatttaattggctgacaccttttcttgatcaattcttgataaaaa 2671895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 48897746 - 48897816
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 77  Q
    ||||||||||||| |   ||| ||||||| ||||| |||||||||||||| |||||||| |||||| ||||    
T  48897746 ataacaaatttaacttgctgaaacatttttttgattaattcttgataaaatctctctagataaatagcaat 48897816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 1714038 - 1714078
Alignment:
Q  1 cgccagataacaaatttaattgattgagacattttcttgat 41  Q
    ||||| ||||||||||||||||||||| | |||||||||||    
T  1714038 cgccaaataacaaatttaattgattgaaatattttcttgat 1714078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 41545462 - 41545392
Alignment:
Q  2 gccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaata 72  Q
    |||| |||||||||||||||| ||||| | |||||||||||||||||||||  ||||||||||| ||||||    
T  41545462 gccaaataacaaatttaattggttgaggccttttcttgataaattcttgatggaaactctctagataaata 41545392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 19482566 - 19482490
Alignment:
Q  1 cgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 77  Q
    ||||| |||||||||||||||| |||| | ||||||||||||||||||| |  |||||||||||| |||||| ||||    
T  19482566 cgccaaataacaaatttaattggttgaaaaattttcttgataaattcttaaataaaactctctagataaatagcaat 19482490  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 51304365 - 51304431
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataac 74  Q
    |||||||||||||||||||| || |||||||| ||| |||||| ||||||||||||||| ||||||||    
T  51304365 ataacaaatttaattgattgtgatattttctt-atatattcttaataaaaactctctagataaataac 51304431  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 24060618 - 24060548
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 77  Q
    |||||||||||||||   | ||||||||||||||| ||||||||||||||| ||| ||| |||||||||||    
T  24060618 ataacaaatttaattagcttagacattttcttgatcaattcttgataaaaattctttagataaataacaat 24060548  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 42108752 - 42108821
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaa 76  Q
    ||||||||||||||||  ||| || |||||||||| ||||||||||||||| | ||||| ||||||||||    
T  42108752 ataacaaatttaattggctgaaactttttcttgatcaattcttgataaaaaatttctagataaataacaa 42108821  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 25817707 - 25817649
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctag 65  Q
    ||||||||||||||||  |||||| |||||||||| ||||||||||||||  |||||||    
T  25817707 ataacaaatttaattggctgagaccttttcttgatcaattcttgataaaatgtctctag 25817649  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 5288564 - 5288507
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctcta 64  Q
    ||||||||||||||||  |||||||||||||| || ||||||| |||||| |||||||    
T  5288564 ataacaaatttaattggctgagacattttcttaatcaattcttaataaaatctctcta 5288507  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 29065344 - 29065381
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaa 44  Q
    |||||||||||||||||||||||| |||||||||||||    
T  29065344 ataacaaatttaattgattgagactttttcttgataaa 29065381  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 37762849 - 37762777
Alignment:
Q  7 ataacaaatttaattgattgaga--cattttcttgataaattcttgataaaaactctctaggtaaataacaat 77  Q
    |||||||||||||||| ||| |   ||||||||||||||||||||||| |||||||| ||| |||||| ||||    
T  37762849 ataacaaatttaattggttgtgtggcattttcttgataaattcttgatgaaaactctttagataaatagcaat 37762777  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 13218497 - 13218442
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctc 62  Q
    |||||||||||||||||  ||||| ||||||| ||||||| || ||||||||||||    
T  13218497 ataacaaatttaattgaccgagaccttttcttaataaatttttaataaaaactctc 13218442  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 41485774 - 41485716
Alignment:
Q  12 aaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaa 70  Q
    |||||||||||  | | || |||||||||| ||||||||||||||||||||||| ||||    
T  41485774 aaatttaattggcttaaaccttttcttgatcaattcttgataaaaactctctagataaa 41485716  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 42504260 - 42504333
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaatcttcat 83  Q
    |||||||||||||||| |||| |  |||||||||| |||||   ||||||||||||||| |||||| |||| |||||    
T  42504260 ataacaaatttaattggttgaaatcttttcttgatcaattc---ataaaaactctctagataaatagcaatgttcat 42504333  T

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Target: scaffold0018 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 69991 - 70059
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataaca 75  Q
    ||||||||||||||||  ||| || |||||||||| |||| | |||||||||||||||| |||||||||    
T  69991 ataacaaatttaattggctgaaaccttttcttgatcaattttagataaaaactctctagataaataaca 70059  T

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Target: scaffold0122 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 18676 - 18606
Alignment:
Q  7 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 77  Q
    ||||||||||||||||| | |||| |||||||||| ||||||| |||||| |||| ||| |||||| ||||    
T  18676 ataacaaatttaattgactaagactttttcttgatcaattcttaataaaatctctttagataaatagcaat 18606  T

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