View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20570_high_63 (Length: 248)
Name: NF20570_high_63
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20570_high_63 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 8 - 248
Target Start/End: Complemental strand, 37292655 - 37292422
Alignment:
| Q |
8 |
ataatactaacaaacggtttcatacatctttcccaagactgaatcnnnnnnnatcaaaaggctttgagttattttctcatggttcatacaacggtttgga |
107 |
Q |
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| T |
37292655 |
ataatactaacaaacggtttcatacatctttcccaagactgaatctttttttatcaaaag-ctttgagttattttctcatggttcatacaacggtttgga |
37292557 |
T |
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| Q |
108 |
nnnnnnnnnnnngaaagtgttgttattgcttgaggcccaagtaatggcgacagagccagagccagagccaactttgccattctcaattgtatctgttgtt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37292556 |
tttttgttttttgaaagtgttgttattgcttgaggcccaagtaatggcgacagagccagagcca------actttgccattctcaattgtatctgttgtt |
37292463 |
T |
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| Q |
208 |
gaagatgttcttcaaaaacatggaggccgattaagcgacat |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
37292462 |
gaagatgttcttcaaaaacatggaggccgattaagcgacat |
37292422 |
T |
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