View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20570_high_65 (Length: 246)

Name: NF20570_high_65
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20570_high_65
NF20570_high_65
[»] chr6 (1 HSPs)
chr6 (1-230)||(23934586-23934815)
[»] chr4 (1 HSPs)
chr4 (1-108)||(29707977-29708083)
[»] chr3 (3 HSPs)
chr3 (132-230)||(44162927-44163025)
chr3 (132-230)||(44189047-44189145)
chr3 (132-230)||(6095221-6095319)
[»] chr2 (2 HSPs)
chr2 (132-230)||(32719191-32719289)
chr2 (132-230)||(32728176-32728274)


Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 23934586 - 23934815
Alignment:
Q  1 agctcatacaacatcctatctttttcagactcagactcaccaacttcatgccatattatctagtttcgaaaaataaacgaagacaaacgataagaatttc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23934586 agctcatacaacatcctatctttttcagactcagactcaccaacttcatgccatattatctagttttgaaaaataaacgaagacaaacgataagaatttc 23934685  T
Q  101 tccgaagtttaccagatattcattgaaattgcagagaaagttggtttgtacctgaagttcttgaagaagtgatccacatgttgtttcagcttgcggaaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23934686 tccgaagtttaccagatattcattgaaattgcagagaaagttggtttgtacctgaagttcttgaagaagtgatccacatgttgtttcagcttgcggaaga 23934785  T
Q  201 ggatgatcattatgaggtttatgcattttg 230  Q
    ||||||||||||||||||||||||||||||    
T  23934786 ggatgatcattatgaggtttatgcattttg 23934815  T

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Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 29707977 - 29708083
Alignment:
Q  1 agctcatacaacatcctatctttttcagactcagactcaccaacttcatgccatattatctagtttcgaaaaataaacgaagacaaacgataagaatttc 100  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  29707977 agctcatacaccatcctatcttcttcagactcagactcaccaacttcatgccatattatctag-ttcgaaaaataaacgaagacaaacaataagaatttc 29708075  T
Q  101 tccgaagt 108  Q
    ||| ||||    
T  29708076 tccaaagt 29708083  T

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Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 132 - 230
Target Start/End: Original strand, 44162927 - 44163025
Alignment:
Q  132 cagagaaagttggtttgtacctgaagttcttgaagaagtgatccacatgttgtttcagcttgcggaagaggatgatcattatgaggtttatgcattttg 230  Q
    |||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||| |||||||||||||| ||||||    
T  44162927 cagataaagttggtttttacctgaagttcttgaagaagtgaaccacatgttgtttcagcttgaggaaaaggatgatcgttatgaggtttatgaattttg 44163025  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 132 - 230
Target Start/End: Original strand, 44189047 - 44189145
Alignment:
Q  132 cagagaaagttggtttgtacctgaagttcttgaagaagtgatccacatgttgtttcagcttgcggaagaggatgatcattatgaggtttatgcattttg 230  Q
    |||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||| |||||||||||||| ||||||    
T  44189047 cagataaagttggtttttacctgaagttcttgaagaagtgaaccacatgttgtttcagcttgaggaaaaggatgatcgttatgaggtttatgaattttg 44189145  T

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Target: chr3; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 132 - 230
Target Start/End: Original strand, 6095221 - 6095319
Alignment:
Q  132 cagagaaagttggtttgtacctgaagttcttgaagaagtgatccacatgttgtttcagcttgcggaagaggatgatcattatgaggtttatgcattttg 230  Q
    |||| ||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||| |||| ||||||||| |||||||||||||| ||||||    
T  6095221 cagataaagttggtttttacttgaagttcttgaagaagtgaaccacatgttgtttcagcttgaggaaaaggatgatcgttatgaggtttatgaattttg 6095319  T

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Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 132 - 230
Target Start/End: Original strand, 32719191 - 32719289
Alignment:
Q  132 cagagaaagttggtttgtacctgaagttcttgaagaagtgatccacatgttgtttcagcttgcggaagaggatgatcattatgaggtttatgcattttg 230  Q
    |||| ||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||| |||| ||||||||| |||||||||||||| ||||||    
T  32719191 cagataaagttggtttttacctgaagttcttgaagaggtgaaccacatgttgtttcagcttgaggaaaaggatgatcgttatgaggtttatgaattttg 32719289  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 132 - 230
Target Start/End: Original strand, 32728176 - 32728274
Alignment:
Q  132 cagagaaagttggtttgtacctgaagttcttgaagaagtgatccacatgttgtttcagcttgcggaagaggatgatcattatgaggtttatgcattttg 230  Q
    |||| |||||| |||| ||||||||||||||||||| |||| |||||||||||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  32728176 cagataaagttcgtttttacctgaagttcttgaagaggtgaaccacatgttgtttcagcttgaggaataggatgatcgttatggggtttatgaattttg 32728274  T

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