View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20570_high_68 (Length: 243)
Name: NF20570_high_68
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20570_high_68 |
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| [»] scaffold0042 (1 HSPs) |
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| [»] scaffold0599 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 37960025 - 37960233
Alignment:
| Q |
16 |
atgtagagtttaatactatatgcttctatttttctatttattttgataggatgccgtatgtgaacaatgatgtttatcttgagcttgcaaggttggatta |
115 |
Q |
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| T |
37960025 |
atgtagagtttaatactatatgcttctatttttctatttattttgataggatgccgtatgtgaacaatgatgtttatcttgagcttgcaaggttggatta |
37960124 |
T |
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| Q |
116 |
caacagttgtcaagcaatgcattatgatgaatggaaagaaatacacaggtaagagtaataaccagagaacactctaacatgcttcactcaatcaaagcaa |
215 |
Q |
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| T |
37960125 |
caacaattgtcaagcaatgcattatgatgaatggaaagaaatacacaggtaagagtaataaccagagaacactctaacatgcttcactcaatcaaagcaa |
37960224 |
T |
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| Q |
216 |
taactaatg |
224 |
Q |
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|||||||| |
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| T |
37960225 |
caactaatg |
37960233 |
T |
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Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 31151564 - 31151367
Alignment:
| Q |
19 |
tagagtttaatactatatgcttctatttttctatttattttgataggatgccgtatgtgaacaatgatgtttatcttgagcttgcaaggttggattacaa |
118 |
Q |
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| T |
31151564 |
tagagtttaatacaatatgcttctatttttctatttattttgataggatgccgtacgtgaacaatgatgtttatcttgagcttgcaaagttagattacaa |
31151465 |
T |
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| Q |
119 |
cagttgtcaagcaatgcattatgatgaatggaaagaaatacacaggtaagagtaataaccagagaaca--ctctaacatgcttcactcaatcaaagca |
214 |
Q |
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| T |
31151464 |
ctattgtcaagcaatgcattatgatgaatgggaagaaatccaaaggtaagaataaaaaccacataacactctctaacatgtttcactcaatgaaagca |
31151367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 23 - 224
Target Start/End: Complemental strand, 11591 - 11385
Alignment:
| Q |
23 |
gtttaatactatatgcttctatttttctatttattttgataggatgccgtatgtgaacaatgatgtttatcttgagcttgcaaggttggattacaacagt |
122 |
Q |
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| T |
11591 |
gtttaatactatatgcttctatttttctatttattttgataggatgccgtacatgaccaatgatgtttatcttgagcttgcaaagttggattacaacaat |
11492 |
T |
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| Q |
123 |
tgtcaagcaatgcattatgatgaatggaaagaa---atacacaggtaagagtaataacca-gaga-acactctaacatgcttcactcaatcaaagcaata |
217 |
Q |
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| T |
11491 |
tgtcaagcaatgcattatgatgaatggaaagaagaaatccaaaggtaagggtagtaaccacgaaatactctctaaaatgcttcactcaatgaaagcaata |
11392 |
T |
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| Q |
218 |
actaatg |
224 |
Q |
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||||||| |
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| T |
11391 |
actaatg |
11385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0599 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: scaffold0599
Description:
Target: scaffold0599; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 23 - 224
Target Start/End: Original strand, 3008 - 3214
Alignment:
| Q |
23 |
gtttaatactatatgcttctatttttctatttattttgataggatgccgtatgtgaacaatgatgtttatcttgagcttgcaaggttggattacaacagt |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||| |||||||||||||| | |
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| T |
3008 |
gtttaatactatatgcttctatttttctatttattttgataggatgccgtacatgaccaatgatgtttaacttgagcttgcaaagttggattacaacaat |
3107 |
T |
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| Q |
123 |
tgtcaagcaatgcattatgatgaatggaaagaa---atacacaggtaagagtaataacca-gaga-acactctaacatgcttcactcaatcaaagcaata |
217 |
Q |
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| T |
3108 |
tgtcaagcaatgcattatgatgaatggaaagaagaaatccaaaggtaagggtagtaaccacgaaatactctctaaaatgcttcactcaatgaaagcaata |
3207 |
T |
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| Q |
218 |
actaatg |
224 |
Q |
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| T |
3208 |
actaatg |
3214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 23 - 224
Target Start/End: Original strand, 11911314 - 11911520
Alignment:
| Q |
23 |
gtttaatactatatgcttctatttttctatttattttgataggatgccgtatgtgaacaatgatgtttatcttgagcttgcaaggttggattacaacagt |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||| |||||||||||||| | |
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| T |
11911314 |
gtttaatactatatgcttctatttttctatttattttgataggatgccgtacatggccaatgatgtttaccttgagcttgcaaagttggattacaacaat |
11911413 |
T |
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| Q |
123 |
tgtcaagcaatgcattatgatgaatggaaagaa---atacacaggtaagagtaataacca-gaga-acactctaacatgcttcactcaatcaaagcaata |
217 |
Q |
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||||||||||||||||||||||||||||||||| || || ||||||| ||| |||||| || | || ||||||||||||||||||||| ||||||||| |
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| T |
11911414 |
tgtcaagcaatgcattatgatgaatggaaagaagaaatccaaaggtaagggtagtaaccacgaaatactctctaacatgcttcactcaatgaaagcaata |
11911513 |
T |
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| Q |
218 |
actaatg |
224 |
Q |
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||||||| |
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| T |
11911514 |
actaatg |
11911520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 59 - 224
Target Start/End: Complemental strand, 12634638 - 12634468
Alignment:
| Q |
59 |
tgataggatgccgtatgtgaacaatgatgtttatcttgagcttgcaaggttggattacaacagttgtcaagcaatgcattatgatgaatgg---aaagaa |
155 |
Q |
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||||||||||||||| ||||||||||| |||| || |||||||||| ||| |||||||||| ||||||||||||||||||| |||||||| ||||| |
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| T |
12634638 |
tgataggatgccgtacatgaacaatgatatttacctcgagcttgcaaagttagattacaacaattgtcaagcaatgcattataatgaatgggaagaagaa |
12634539 |
T |
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| Q |
156 |
atacacaggtaagagtaataaccagagaaca--ctctaacatgcttcactcaatcaaagcaataactaatg |
224 |
Q |
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|| || |||||||||||||||||| | |||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
12634538 |
atccaaaggtaagagtaataaccacataacactctctaacatgcttcactcaatgaaagcaataactaatg |
12634468 |
T |
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