View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20570_high_70 (Length: 241)
Name: NF20570_high_70
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20570_high_70 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 26 - 227
Target Start/End: Original strand, 3039811 - 3040015
Alignment:
| Q |
26 |
aaaaacataatgtt-aattttgatagattttatattgtataagtcatttatgatgttatctcggatgtcagggttgtgcaagggcaatactagctaggat |
124 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
3039811 |
aaaaacataatgtttaattttgatagattttatattgtataagtcatttatgatgttatctcggatgccagggttgtgcaagggcgatactagctaggat |
3039910 |
T |
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| Q |
125 |
gctacggggtggtaatggatcttggtctctatcatagga--tggtacccaatttgtagaattctgctattctcccaacacattttgttcgtgtccaactg |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||| || |||||| |
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| T |
3039911 |
gctacggggtggtaatggatcttggtctctatcataggatgtggtacccaatttgtagaattatgctattcttccaacacattttgttcgcgttcaactg |
3040010 |
T |
|
| Q |
223 |
aactt |
227 |
Q |
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||||| |
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| T |
3040011 |
aactt |
3040015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 3040196 - 3040152
Alignment:
| Q |
180 |
gaattctgctattctcccaacacattttgttcgtgtccaactgaa |
224 |
Q |
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| T |
3040196 |
gaattctgctcttctcccaacacattttgctcgcctccaactgaa |
3040152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 178 - 236
Target Start/End: Complemental strand, 34328749 - 34328691
Alignment:
| Q |
178 |
tagaattctgctattctcccaacacattttgttcgtgtccaactgaacttcccaaaata |
236 |
Q |
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| T |
34328749 |
tagaattctgctattttcccaacaagttttgttcgcgtccaactgaacttcccaaaata |
34328691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 21066408 - 21066364
Alignment:
| Q |
180 |
gaattctgctattctcccaacacattttgttcgtgtccaactgaa |
224 |
Q |
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| T |
21066408 |
gaattctgctattctcccaacacattttaatcgcgcccaactgaa |
21066364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 22754886 - 22754825
Alignment:
| Q |
179 |
agaattct-gctattctcccaacacattttgttcgtgtccaactgaacttcccaaaatattc |
239 |
Q |
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| T |
22754886 |
agaattctcgctcttctcccaacacattttgctcgcgttcaactgaacttcccaaaatattc |
22754825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 236
Target Start/End: Complemental strand, 15043042 - 15042984
Alignment:
| Q |
178 |
tagaattctgctattctcccaacacattttgttcgtgtccaactgaacttcccaaaata |
236 |
Q |
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|||||||||||| |||||||| |||||||||||||| |||||| ||||||| |||||| |
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| T |
15043042 |
tagaattctgctcttctcccatcacattttgttcgtttccaaccaaacttcctaaaata |
15042984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 237
Target Start/End: Original strand, 39926355 - 39926406
Alignment:
| Q |
186 |
tgctattctcccaacacattttgttcgtgtccaactgaacttcccaaaatat |
237 |
Q |
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|||| |||||||||||||||||| ||| ||| ||||||||||| |||||||| |
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| T |
39926355 |
tgctcttctcccaacacattttgctcgcgtcaaactgaacttctcaaaatat |
39926406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 19234352 - 19234397
Alignment:
| Q |
179 |
agaattctgctattctcccaacacattttgttcgtgtccaactgaa |
224 |
Q |
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||||||||||| |||||||||||||||||| ||| | ||||||||| |
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| T |
19234352 |
agaattctgctcttctcccaacacattttgctcgcgcccaactgaa |
19234397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 44798649 - 44798705
Alignment:
| Q |
180 |
gaattctgctattctcccaacacattttgttcgtgtccaactgaacttcccaaaata |
236 |
Q |
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|
||||| |||| |||||||||||||||||| ||| | | |||||||||||| |||||| |
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| T |
44798649 |
gaattttgctcttctcccaacacattttgctcgcgcctaactgaacttcctaaaata |
44798705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 44798894 - 44798862
Alignment:
| Q |
192 |
tctcccaacacattttgttcgtgtccaactgaa |
224 |
Q |
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| T |
44798894 |
tctcccaacacattttgttcgcgtccaactgaa |
44798862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 12630 - 12573
Alignment:
| Q |
180 |
gaattctgctattctcccaacacattttgttcgtgtccaactgaacttcccaaaatat |
237 |
Q |
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|||||||||| ||| || |||||||||| |||| | |||||||||||||||||||||| |
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| T |
12630 |
gaattctgctcttccccgaacacattttattcgcgcccaactgaacttcccaaaatat |
12573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 8360100 - 8360157
Alignment:
| Q |
180 |
gaattctgctattctcccaacacattttgttcgtgtccaactgaacttcccaaaatat |
237 |
Q |
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|||||||||| |||||||||||||||||| ||| | ||||||||||||| ||||||| |
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| T |
8360100 |
gaattctgctcttctcccaacacattttgctcgcgctcaactgaacttcctaaaatat |
8360157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 24582389 - 24582447
Alignment:
| Q |
180 |
gaattctgctattctcccaacacattttgttcgtgtccaactgaacttcccaaaatatt |
238 |
Q |
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|||||||||| |||||||||||||||||| | | || ||||| ||||| |||||||||| |
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| T |
24582389 |
gaattctgctcttctcccaacacattttgcttgcgttcaactaaactttccaaaatatt |
24582447 |
T |
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