View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20570_high_71 (Length: 241)
Name: NF20570_high_71
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20570_high_71 |
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| [»] scaffold0636 (1 HSPs) |
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Alignment Details
Target: scaffold0636 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold0636
Description:
Target: scaffold0636; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 8875 - 8964
Alignment:
| Q |
22 |
atgcatatccctgctaactaaactaaactcaccgggacaagaaggataaaatttaattattgttagaaatacatttgtggtcattttatc |
111 |
Q |
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| T |
8875 |
atgcatgtctctgctaactaaactaaactcaccgggacaagaaggataaaatttaattattgttagaaatacatttgtggtcattttatc |
8964 |
T |
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Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 103 - 224
Target Start/End: Complemental strand, 46047380 - 46047256
Alignment:
| Q |
103 |
cattttatcatcgatataaatcccaaaatgcaagaccnnnnnnnnnnnn---tcccaaaatacgtgcatgtaagggctcattgtattgaaggaaaaaaca |
199 |
Q |
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| T |
46047380 |
cattttatcatcgatataaatcccaaaatgcaagaccaaaaaaaaaaaaaaatcccaaaatacgtgcatgtaagggctcattgtattgaaggaaaaaaca |
46047281 |
T |
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| Q |
200 |
tgcatcacatgtatttatacaaatg |
224 |
Q |
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| T |
46047280 |
tgcatcacatgtatttatacaaatg |
46047256 |
T |
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