View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20570_high_73 (Length: 238)
Name: NF20570_high_73
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20570_high_73 |
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| [»] chr6 (8 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 2620126 - 2619906
Alignment:
| Q |
18 |
ccatcaagaagtatctctccaccaattggatcataaaatctttgtaaaagtgatacaactgttgattttcctgaaccacttcctcctactaatgcaactg |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
2620126 |
ccatcaagaagaatctctccaccaattggatcataaaatctttgtaaaagtgatacaactgttgattttcctgaaccacttcctcctactaatgcaaccg |
2620027 |
T |
|
| Q |
118 |
ttttccctgatggaacctttaaacaaaaatcatttaggaccacactttcttgtcttgatggatacacaaattcaacatggttgaattcaactttccctga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2620026 |
ttttccctgatggaacctttaaacaaaaatcatttaggaccacactttctggtcttgatggatacacaaattcaacatggttgaattcaactttccctga |
2619927 |
T |
|
| Q |
218 |
cactttctctagaatttcacc |
238 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
2619926 |
cactttctctagaatttcacc |
2619906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 2677458 - 2677678
Alignment:
| Q |
18 |
ccatcaagaagtatctctccaccaattggatcataaaatctttgtaaaagtgatacaactgttgattttcctgaaccacttcctcctactaatgcaactg |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
2677458 |
ccatcaagaagaatctctccaccaattggatcataaaatctttgcaaaagtgatacaactgttgattttcctgaaccacttcctcctactaatgcaaccg |
2677557 |
T |
|
| Q |
118 |
ttttccctgatggaacctttaaacaaaaatcatttaggaccacactttcttgtcttgatggatacacaaattcaacatggttgaattcaactttccctga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||| | |
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| T |
2677558 |
ttttccctgatggaacctttaaacaaaaatcatttaggaccacactttctggtcttgatggatacacaaattcaacatggttgaactcaacttcccctaa |
2677657 |
T |
|
| Q |
218 |
cactttctctagaatttcacc |
238 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
2677658 |
gactttctctagaatttcacc |
2677678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 2586436 - 2586216
Alignment:
| Q |
18 |
ccatcaagaagtatctctccaccaattggatcataaaatctttgtaaaagtgatacaactgttgattttcctgaaccacttcctcctactaatgcaactg |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2586436 |
ccatcaagaagaatctctccaccaattggatcataaaatctttgcaaaagtgatacaactgttgattttcctgaaccacttcctcctactaatgccactg |
2586337 |
T |
|
| Q |
118 |
ttttccctgatggaacctttaaacaaaaatcatttaggaccacactttcttgtcttgatggatacacaaattcaacatggttgaattcaactttccctga |
217 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| |||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| || |
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|
| T |
2586336 |
tttttcctgatggaacctttaagcaaaaatcttttaagatcacactttctggtcttgatggatacacaaattcaacatggttgaattcaacttcccccga |
2586237 |
T |
|
| Q |
218 |
cactttctctagaatttcacc |
238 |
Q |
| |
|
||||||||||| ||||||||| |
|
|
| T |
2586236 |
cactttctctataatttcacc |
2586216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 2448718 - 2448498
Alignment:
| Q |
18 |
ccatcaagaagtatctctccaccaattggatcataaaatctttgtaaaagtgatacaactgttgattttcctgaaccacttcctcctactaatgcaactg |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
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|
| T |
2448718 |
ccatcaagaagaatctctccaccaattggatcataaaatctttgcaaaagtgatacaactgttgattttcctgaaccactttctcctactaatgccactg |
2448619 |
T |
|
| Q |
118 |
ttttccctgatggaacctttaaacaaaaatcatttaggaccacactttcttgtcttgatggatacacaaattcaacatggttgaattcaactttccctga |
217 |
Q |
| |
|
|||| |||||||||||||| || ||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| | |
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|
| T |
2448618 |
tttttcctgatggaaccttcaagcaaaaatcatttaagatcacactttctggtcttgatggatacacaaattcaacatggttgaattcaacttcccccaa |
2448519 |
T |
|
| Q |
218 |
cactttctctagaatttcacc |
238 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
2448518 |
gactttctctagaatttcacc |
2448498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 2432851 - 2432631
Alignment:
| Q |
18 |
ccatcaagaagtatctctccaccaattggatcataaaatctttgtaaaagtgatacaactgttgattttcctgaaccacttcctcctactaatgcaactg |
117 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2432851 |
ccatcaagaagaatctctccaccaattggatcataaaatctttgtaaaagtgatacaaccgttgattttcctgaaccacttcctcctactaatgccactg |
2432752 |
T |
|
| Q |
118 |
ttttccctgatggaacctttaaacaaaaatcatttaggaccacactttcttgtcttgatggatacacaaattcaacatggttgaattcaactttccctga |
217 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||| || |||||||||| ||||||||||||||||||||||||||| |||||| ||||||| ||| | |
|
|
| T |
2432751 |
tttttcctgatggaacctttaagcaaaaatcatttaagatcacactttctggtcttgatggatacacaaattcaacattgttgaactcaacttcccccaa |
2432652 |
T |
|
| Q |
218 |
cactttctctagaatttcacc |
238 |
Q |
| |
|
|||||||||| ||||||||| |
|
|
| T |
2432651 |
gactttctctataatttcacc |
2432631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 2572622 - 2572842
Alignment:
| Q |
18 |
ccatcaagaagtatctctccaccaattggatcataaaatctttgtaaaagtgatacaactgttgattttcctgaaccacttcctcctactaatgcaactg |
117 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
2572622 |
ccatcaagaagaatctctccaccaattggatcataaaatctttgtaaaagtgatacaactgttgattttcctgaaccacttcctcctaccaatgccactg |
2572721 |
T |
|
| Q |
118 |
ttttccctgatggaacctttaaacaaaaatcatttaggaccacactttcttgtcttgatggatacacaaattcaacatggttgaattcaactttccctga |
217 |
Q |
| |
|
|||| |||||||||||||| || ||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||| | |
|
|
| T |
2572722 |
tttttcctgatggaaccttcaagcaaaaatcatttaagatcacactttctggtcttgatggatacacaaattcaacatggttgaactcaacttcccccaa |
2572821 |
T |
|
| Q |
218 |
cactttctctagaatttcacc |
238 |
Q |
| |
|
|||||||||| ||||||||| |
|
|
| T |
2572822 |
gactttctctataatttcacc |
2572842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 2645020 - 2645234
Alignment:
| Q |
18 |
ccatcaagaagtatctctccaccaattggatcataaaatctttgtaaaagtgatacaactgttgattttcctgaaccacttcctcctactaatgcaactg |
117 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
2645020 |
ccatcaagaagaatctctccacaaattggatcataaaatctttgcaaaagtgatacaactgttgattttcctgaaccactttctcctactaatgccactg |
2645119 |
T |
|
| Q |
118 |
ttttccctgatggaacctttaaacaaaaatcatttaggaccacactttcttgtcttgatggatacacaaattcaacatggttgaattcaactttccctga |
217 |
Q |
| |
|
|||| |||||||||||||| || ||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||| | |
|
|
| T |
2645120 |
tttttcctgatggaaccttcaagcaaaaatcatttaagatcacactttctggtcttgatggatacacaaattcaacatggttaaattcaacttctcctaa |
2645219 |
T |
|
| Q |
218 |
cactttctctagaat |
232 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
2645220 |
aactttctctagaat |
2645234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 2600200 - 2600408
Alignment:
| Q |
18 |
ccatcaagaagtatctctccaccaattggatcataaaatctttgtaaaagtgatacaactgttgattttcctgaaccacttcctcctactaatgcaactg |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2600200 |
ccatcaagaagaatctctccaccaattggatcataaaatctttgtaaaagtgatacaactgttgattttcctgaaccacttcctcctactaatgcaaccg |
2600299 |
T |
|
| Q |
118 |
ttttccctgatggaacctttaaacaaaaatcatttaggaccacactttcttgtcttgatggatacacaaattcaacatggttgaattcaactttccctga |
217 |
Q |
| |
|
|||||||||||||| | ||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||| ||| | |
|
|
| T |
2600300 |
ttttccctgatggacc------aca------ctttaggaccacactttctggtcttgatggatacacaaattcaacattgttgaactcaacttcccccaa |
2600387 |
T |
|
| Q |
218 |
cactttctctagaatttcacc |
238 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
2600388 |
gactttctctagaatttcacc |
2600408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 17872796 - 17872910
Alignment:
| Q |
18 |
ccatcaagaagtatctctccaccaattggatcataaaatctttgtaaaagtgatacaactgttgattttcctgaaccacttcctcctactaatgcaactg |
117 |
Q |
| |
|
||||||||| ||||||| ||||| |||||||||||||| | ||| || | |||| || |||||||| ||||||||||| | || || ||||| | || |
|
|
| T |
17872796 |
ccatcaagacgtatctcaccaccgattggatcataaaaccgttgcaataaagatatcacagttgatttccctgaaccactctcaccaaccaatgccattg |
17872895 |
T |
|
| Q |
118 |
ttttccctgatggaa |
132 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
17872896 |
ttttccctgctggaa |
17872910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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