View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20570_high_76 (Length: 236)
Name: NF20570_high_76
Description: NF20570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20570_high_76 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 14874914 - 14875134
Alignment:
| Q |
1 |
tgctaatgcttttctaataacatcaacaggatctttctctgccataactggatcatagttgtaaaattgtatcacaggcatttgaaaacgtaacccttct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
14874914 |
tgctaatgcttttctaataacatcaacaggatctttctctgccataactggaacatagttgtaaaattgtatcacaggcatttgataacgtaacccttct |
14875013 |
T |
|
| Q |
101 |
tggtcatctatatctgaaagtaattttatttcatgaggtgttggttttgagggtcttacaaattcaggtgcacacctcttcactttgaatactagagatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
14875014 |
tggtcatctatatctgaaagtaattttatttcatgaggtgttggttttgagggtcttacaaattcaggggcacacctcttcactttgaataccagagatt |
14875113 |
T |
|
| Q |
201 |
gggccataattatgatctaat |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
14875114 |
gggccataattatgatctaat |
14875134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 14789757 - 14789977
Alignment:
| Q |
1 |
tgctaatgcttttctaataacatcaacaggatctttctctgccataactggatcatagttgtaaaattgtatcacaggcatttgaaaacgtaacccttct |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||| |||||||| ||||||||| |||||||||||||||| | | ||||| ||||||| |||||| |
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|
| T |
14789757 |
tgctaatgcttttctaataatatcaacagggtctttccctgccatatttggatcatacttgtaaaattgtatcaaacgagtttgataacgtaatccttct |
14789856 |
T |
|
| Q |
101 |
tggtcatctatatctgaaagtaattttatttcatgaggtgttggttttgagggtcttacaaattcaggtgcacacctcttcactttgaatactagagatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
14789857 |
tggtcatctatatctgaaagtaattttatttcatgaggtgttggttttgatggtcttacaaattcagtggcacacctcttcactttgaatactagagatt |
14789956 |
T |
|
| Q |
201 |
gggccataattatgatctaat |
221 |
Q |
| |
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| ||||||||||||| ||||| |
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| T |
14789957 |
gagccataattatgaactaat |
14789977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 14769708 - 14769917
Alignment:
| Q |
1 |
tgctaatgcttttctaataacatcaacaggatctttctctgccataactggatcatagttgtaaaattgtatcacaggcatttgaaaacgtaacccttct |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||||||| ||||||||| || |||||||||||||| || ||||||||||||||||||||| |
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|
| T |
14769708 |
tgctaatgcttttctaataaaatcaacaggatctttacctgccatatttggatcatatttataaaattgtatcactggaatttgaaaacgtaacccttct |
14769807 |
T |
|
| Q |
101 |
tggtcatctatatctgaaagtaattttatttcatgaggtgttggttttgagggtcttacaaattcaggtgcacacctcttcactttgaatactagagatt |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||| |||||| ||||||| |
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|
| T |
14769808 |
tggtcatctatgtctgaaagtaattttatttcatgaggtgttggttttgatggtcttacaaattcaggggcacttctcttcactgtgaataagagagatt |
14769907 |
T |
|
| Q |
201 |
gggccataat |
210 |
Q |
| |
|
|||||||||| |
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|
| T |
14769908 |
gggccataat |
14769917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 14880200 - 14880412
Alignment:
| Q |
1 |
tgctaatgcttttctaataacatcaacaggatctttctctgccataactggatcatagttgtaaaattgtatcacaggcatttgaaaacgtaacccttct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||| || |||||||||| ||| | ||| ||||||| ||| |
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|
| T |
14880200 |
tgctaatgcttttctaataacatcaacaggatctttccctgccatatttggatcatggttatagaattgtatcaaaggaacttgccaacgtaatgaatct |
14880299 |
T |
|
| Q |
101 |
tggtcatctatatctgaaagtaattttatttcatgaggtgttggttttgagggtcttacaaattcaggtgcacacctcttcactttgaatactagagatt |
200 |
Q |
| |
|
|||||||| || ||||| |||| ||| |||||||| |||| |||||||| ||| ||| |||||||| ||| |||||||||||||||||||||||||| |
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| T |
14880300 |
tggtcatcaatgtctgagagtagctttgtttcatgaagtgtgggttttgatggtgttatcaattcagggtcacgcctcttcactttgaatactagagatt |
14880399 |
T |
|
| Q |
201 |
gggccataattat |
213 |
Q |
| |
|
|||||||||||| |
|
|
| T |
14880400 |
tggccataattat |
14880412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 14757163 - 14756951
Alignment:
| Q |
1 |
tgctaatgcttttctaataacatcaacaggatctttctctgccataactggatcatagttgtaaaattgtatcacaggcatttgaaaacgtaacccttct |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||| |||||||| ||||||||| || |||||||||||| |||| | ||| ||||||| ||| |
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|
| T |
14757163 |
tgctaatgcttttctaataatatcaacagggtctttccctgccatatttggatcatatttataaaattgtatcccaggaacttgccaacgtaatgaatct |
14757064 |
T |
|
| Q |
101 |
tggtcatctatatctgaaagtaattttatttcatgaggtgttggttttgagggtcttacaaattcaggtgcacacctcttcactttgaatactagagatt |
200 |
Q |
| |
|
|||||||| || ||||| |||| |||| ||||||||||||| |||||||| || ||| | ||||||| ||| ||||||||| |||| ||||||| | |
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|
| T |
14757063 |
tggtcatcaatgtctgagagtagttttgtttcatgaggtgtgggttttgatggagttatcagttcaggttcacgcctcttcaccgtgaacactagagcat |
14756964 |
T |
|
| Q |
201 |
gggccataattat |
213 |
Q |
| |
|
||||||||||||| |
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|
| T |
14756963 |
gggccataattat |
14756951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 14857517 - 14857310
Alignment:
| Q |
1 |
tgctaatgcttttctaataacatcaacaggatctttctctgccataactggatcatagttgtaaaattgtatcacaggcatttgaaaacgtaacccttct |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||| |||||||| ||||||||| || |||||||| ||| | || ||||||||||||||||||||| |
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|
| T |
14857517 |
tgctaatgcttttctaataatatcaacagggtctttccctgccatatttggatcatatttataaaattggatcgctggaatttgaaaacgtaacccttct |
14857418 |
T |
|
| Q |
101 |
tggtcatctatatctgaaagtaattttatttcatgaggtgttggttttgagggtcttacaaattcaggtgcacacctcttcactttgaatactagagatt |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||| ||||||| ||||||||||||||| |||||| |||| || |
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|
| T |
14857417 |
tggtcatctatgtctgaaagtaattttatttcatgaggtgcaggttttgatggtcttacatattcaggggcacacctcttcactgtgaataacagaggtt |
14857318 |
T |
|
| Q |
201 |
gggccata |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
14857317 |
gggccata |
14857310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 8 - 207
Target Start/End: Original strand, 91877 - 92076
Alignment:
| Q |
8 |
gcttttctaataacatcaacaggatctttctctgccataactggatcatagttgtaaaattgtatcacaggcatttgaaaacgtaacccttcttggtcat |
107 |
Q |
| |
|
||||||||||||||| ||||||| ||||| || |||||| ||||| |||||||||||||||||||| ||| | ||||| ||||| || |||||||| |
|
|
| T |
91877 |
gcttttctaataacaacaacagggtctttgccttccataattggattatagttgtaaaattgtatcaaaggaacatgaaagcgtaaagattgttggtcat |
91976 |
T |
|
| Q |
108 |
ctatatctgaaagtaattttatttcatgaggtgttggttttgagggtcttacaaattcaggtgcacacctcttcactttgaatactagagattgggccat |
207 |
Q |
| |
|
|||| ||||| ||| ||||||||||||||| || |||||||| || |||| ||||||||| ||| |||||| |||||||||| |||||||||||||| |
|
|
| T |
91977 |
ctatgtctgagagtcgttttatttcatgaggagtgggttttgatggacttatcaattcaggttcactcctcttgactttgaataacagagattgggccat |
92076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 7 - 213
Target Start/End: Complemental strand, 35368839 - 35368633
Alignment:
| Q |
7 |
tgcttttctaataacatcaacaggatctttctctgccataactggatcatagttgtaaaattgtatcacaggcatttgaaaacgtaacccttcttggtca |
106 |
Q |
| |
|
|||||||||||||||||||||| | |||||| || |||||| ||||||||| || |||||||||||| |||| | ||| ||||||| ||||| ||| |
|
|
| T |
35368839 |
tgcttttctaataacatcaacaaggtctttcccttccataattggatcataattataaaattgtatcccaggaacttgccaacgtaatgaatcttgatca |
35368740 |
T |
|
| Q |
107 |
tctatatctgaaagtaattttatttcatgaggtgttggttttgagggtcttacaaattcaggtgcacacctcttcactttgaatactagagattgggcca |
206 |
Q |
| |
|
|| || | ||| ||| ||||||||||||||||||| | ||||| || ||| ||||||||| ||| ||||||||| |||||| |||||||||||||| |
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|
| T |
35368739 |
tcaatgtttgagagtgattttatttcatgaggtgtggaatttgatggagttattaattcaggttcacgcctcttcaccgtgaatattagagattgggcca |
35368640 |
T |
|
| Q |
207 |
taattat |
213 |
Q |
| |
|
||||||| |
|
|
| T |
35368639 |
taattat |
35368633 |
T |
|
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